Wall clock time and date at job start Tue Mar 31 2020 06:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47509 * 2 1 4 4 C 1.52993 * 109.47502 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47443 * 180.02562 * 4 3 2 6 6 C 1.36987 * 120.00197 * 90.00506 * 5 4 3 7 7 H 1.08004 * 120.00127 * 213.72637 * 6 5 4 8 8 C 1.38832 * 120.00167 * 33.44566 * 6 5 4 9 9 N 1.31537 * 119.99713 * 28.05665 * 8 6 5 10 10 Si 1.86800 * 120.00059 * 208.05867 * 8 6 5 11 11 H 1.48493 * 109.47078 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.46992 * 119.99972 * 10 8 6 13 13 H 1.48499 * 109.47058 * 240.00062 * 10 8 6 14 14 C 1.38438 * 120.00204 * 269.99987 * 5 4 3 15 15 N 1.32553 * 119.20678 * 359.65833 * 14 5 4 16 16 C 1.32332 * 120.71460 * 179.97438 * 15 14 5 17 17 Cl 1.73605 * 120.41391 * 180.02562 * 16 15 14 18 18 C 1.38872 * 119.16768 * 359.97438 * 16 15 14 19 19 C 1.38544 * 118.54260 * 0.02562 * 18 16 15 20 20 C 1.50700 * 120.39332 * 180.02562 * 19 18 16 21 21 C 1.53002 * 109.46910 * 124.99760 * 20 19 18 22 22 N 1.32291 * 119.21003 * 359.72748 * 19 18 16 23 23 H 1.09006 * 109.46948 * 59.99369 * 1 2 3 24 24 H 1.08990 * 109.47330 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46737 * 299.99870 * 1 2 3 26 26 H 1.09000 * 109.46737 * 240.00130 * 2 1 3 27 27 H 1.08998 * 109.47139 * 120.00399 * 2 1 3 28 28 H 1.09000 * 109.47015 * 60.00300 * 3 2 1 29 29 H 1.09006 * 109.47531 * 300.00274 * 3 2 1 30 30 H 1.09002 * 109.47300 * 60.00075 * 4 3 2 31 31 H 1.09002 * 109.47568 * 300.00320 * 4 3 2 32 32 H 0.97008 * 120.00415 * 6.09448 * 9 8 6 33 33 H 1.08001 * 120.73234 * 179.97438 * 18 16 15 34 34 H 1.08995 * 109.47310 * 245.00139 * 20 19 18 35 35 H 1.09003 * 109.47340 * 5.00290 * 20 19 18 36 36 H 1.08997 * 109.47470 * 299.99747 * 21 20 19 37 37 H 1.09000 * 109.47263 * 60.00599 * 21 20 19 38 38 H 1.09011 * 109.47012 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8235 0.0000 6 6 4.2874 3.4686 1.1866 7 1 4.1125 4.5314 1.2660 8 6 4.7388 2.7552 2.2887 9 7 5.4540 1.6645 2.1182 10 14 4.3304 3.3441 4.0138 11 1 3.5204 4.5861 3.9339 12 1 3.5585 2.2940 4.7255 13 1 5.5882 3.6207 4.7531 14 6 4.2887 3.4769 -1.1986 15 7 4.0685 2.8356 -2.3376 16 6 4.2782 3.4315 -3.5003 17 17 3.9866 2.5844 -4.9874 18 6 4.7334 4.7434 -3.5161 19 6 4.9527 5.3826 -2.3066 20 6 5.4460 6.8062 -2.2750 21 6 4.4893 7.6590 -1.4392 22 7 4.7183 4.7303 -1.1798 23 1 -0.3633 0.5140 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.6768 1.9562 0.8900 29 1 1.6768 1.9564 -0.8900 30 1 3.9330 0.9287 -0.8909 31 1 3.9338 0.9284 0.8891 32 1 5.7410 1.4068 1.2281 33 1 4.9134 5.2540 -4.4506 34 1 6.4412 6.8362 -1.8317 35 1 5.4889 7.1986 -3.2911 36 1 3.4941 7.6291 -1.8826 37 1 4.4464 7.2668 -0.4231 38 1 4.8464 8.6887 -1.4159 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167129645.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:11 Heat of formation + Delta-G solvation = 30.850771 kcal Electronic energy + Delta-G solvation = -20440.267484 eV Core-core repulsion = 17343.388223 eV Total energy + Delta-G solvation = -3096.879261 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.06053 -37.18060 -36.26457 -34.43265 -34.10971 -32.09520 -31.20875 -29.57795 -28.23405 -25.11705 -24.25444 -23.38428 -21.81745 -20.84587 -20.15457 -18.47756 -16.63803 -16.40301 -15.06470 -14.79916 -14.71950 -14.31614 -14.09183 -13.78941 -13.72823 -13.55876 -13.38468 -12.51017 -12.39998 -12.13797 -12.05058 -11.49233 -11.25348 -11.13814 -10.97052 -10.84601 -10.74036 -10.69029 -10.65201 -10.33472 -10.19314 -9.96424 -9.87711 -9.48373 -9.44581 -8.72339 -8.18533 -7.38363 -6.75067 -4.04305 1.90371 1.99323 2.23747 3.24577 3.25872 3.42685 3.86740 4.30359 4.54189 4.90640 4.92891 5.30754 5.36620 5.40242 5.52416 5.57917 5.61610 5.78718 5.83296 5.92056 6.03308 6.09543 6.13407 6.18452 6.20933 6.25523 6.30651 6.46884 6.48192 6.56794 6.61965 6.78584 6.94682 7.06562 7.61008 7.83700 8.01220 8.33289 8.79164 9.15264 9.55804 10.37594 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.011593 B = 0.007306 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.652423 B = 3831.703874 C = 5549.292697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C -0.122 4.122 4 C 0.109 3.891 5 N -0.391 5.391 6 C -0.372 4.372 7 H 0.097 0.903 8 C 0.008 3.992 9 N -0.859 5.859 10 Si 1.080 2.920 11 H -0.280 1.280 12 H -0.280 1.280 13 H -0.283 1.283 14 C 0.517 3.483 15 N -0.591 5.591 16 C 0.277 3.723 17 Cl -0.058 7.058 18 C -0.342 4.342 19 C 0.230 3.770 20 C -0.066 4.066 21 C -0.140 4.140 22 N -0.552 5.552 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.279 0.721 33 H 0.129 0.871 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.913 3.348 -6.351 8.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.160 4.160 4 C -0.015 4.015 5 N -0.084 5.084 6 C -0.501 4.501 7 H 0.115 0.885 8 C -0.201 4.201 9 N -0.491 5.491 10 Si 0.905 3.095 11 H -0.206 1.206 12 H -0.206 1.206 13 H -0.210 1.210 14 C 0.166 3.834 15 N -0.320 5.320 16 C 0.098 3.902 17 Cl -0.030 7.030 18 C -0.374 4.374 19 C 0.075 3.925 20 C -0.104 4.104 21 C -0.198 4.198 22 N -0.276 5.276 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.147 0.853 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.031 2.153 -3.601 5.819 hybrid contribution 0.038 0.589 -2.816 2.877 sum -3.994 2.741 -6.418 8.041 Atomic orbital electron populations 1.21739 0.96296 1.00883 1.01573 1.21427 0.95356 0.97200 1.01773 1.21818 0.96305 0.96057 1.01849 1.21688 0.93332 0.83112 1.03403 1.42487 1.53510 1.11551 1.00804 1.20542 1.46689 0.96989 0.85887 0.88522 1.26567 0.93214 0.95633 1.04685 1.70724 1.26286 1.25106 1.26980 0.83345 0.76868 0.76083 0.73212 1.20564 1.20553 1.20952 1.19408 0.91772 0.86934 0.85308 1.66992 1.28682 1.39337 0.96953 1.21342 0.92955 0.88665 0.87287 1.98349 1.94439 1.79502 1.30702 1.21467 1.20215 0.95968 0.99777 1.21166 0.88905 0.95054 0.87326 1.20402 0.99878 0.89196 1.00949 1.21635 0.98551 0.98267 1.01367 1.67690 1.21417 1.08773 1.29705 0.93081 0.93206 0.92899 0.92260 0.92039 0.91833 0.92682 0.91333 0.88676 0.90978 0.85287 0.90029 0.90640 0.93202 0.91156 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.12 -1.93 5.93 -26.73 -0.16 -2.09 16 3 C -0.12 -2.39 5.54 -26.74 -0.15 -2.53 16 4 C 0.11 2.45 4.57 -4.05 -0.02 2.43 16 5 N -0.39 -9.79 2.45 -117.05 -0.29 -10.08 16 6 C -0.37 -9.69 8.88 -15.03 -0.13 -9.83 16 7 H 0.10 2.61 7.68 -52.48 -0.40 2.21 16 8 C 0.01 0.21 4.81 -17.46 -0.08 0.12 16 9 N -0.86 -22.96 12.14 55.49 0.67 -22.29 16 10 Si 1.08 22.54 30.00 -169.99 -5.10 17.44 16 11 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 12 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 13 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 14 C 0.52 12.70 8.13 -322.66 -2.62 10.08 16 15 N -0.59 -13.57 9.11 -10.99 -0.10 -13.67 16 16 C 0.28 5.58 7.33 -17.10 -0.13 5.46 16 17 Cl -0.06 -0.97 29.15 -51.86 -1.51 -2.48 16 18 C -0.34 -6.34 9.60 -39.23 -0.38 -6.72 16 19 C 0.23 4.48 6.21 -82.28 -0.51 3.97 16 20 C -0.07 -0.98 6.37 -27.88 -0.18 -1.16 16 21 C -0.14 -2.00 9.78 37.16 0.36 -1.63 16 22 N -0.55 -12.91 8.95 -10.14 -0.09 -13.00 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.07 1.55 7.33 -51.93 -0.38 1.17 16 31 H 0.10 2.28 5.29 -51.93 -0.27 2.00 16 32 H 0.28 7.69 7.23 -40.82 -0.29 7.39 16 33 H 0.13 1.98 8.00 -52.49 -0.42 1.56 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 0.90 7.93 -51.93 -0.41 0.49 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.17 7.97 -51.93 -0.41 0.76 16 38 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 LS Contribution 333.05 15.07 5.02 5.02 Total: -1.00 -27.76 333.05 -10.64 -38.41 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.62 Total: 4.21 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -3.63 Total: -3.55 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: 0.20 Total: -59.04 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.10 Total: 17.44 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.51 Total: -2.48 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.76 -10.64 -38.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129645.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.257 kcal (2) G-P(sol) polarization free energy of solvation -27.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds