Wall clock time and date at job start Tue Mar 31 2020 06:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47189 * 2 1 4 4 C 1.50699 * 109.47128 * 119.99859 * 2 1 3 5 5 C 1.38532 * 120.39112 * 274.99946 * 4 2 1 6 6 C 1.38790 * 118.54394 * 179.97438 * 5 4 2 7 7 Cl 1.73595 * 120.41311 * 180.02562 * 6 5 4 8 8 N 1.32407 * 119.16538 * 0.02562 * 6 5 4 9 9 C 1.32472 * 120.71626 * 359.97438 * 8 6 5 10 10 N 1.38409 * 119.20731 * 179.97438 * 9 8 6 11 11 C 1.46498 * 119.99772 * 0.28207 * 10 9 8 12 12 C 1.52996 * 109.47059 * 179.72336 * 11 10 9 13 13 C 1.53003 * 109.47301 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47008 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00362 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99653 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00157 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00386 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47111 * 89.99562 * 18 16 14 20 20 H 1.48494 * 109.47201 * 210.00305 * 18 16 14 21 21 H 1.48506 * 109.46710 * 330.00066 * 18 16 14 22 22 N 1.32308 * 120.39204 * 95.23571 * 4 2 1 23 23 H 1.09000 * 109.47586 * 300.00554 * 1 2 3 24 24 H 1.09008 * 109.46934 * 60.00239 * 1 2 3 25 25 H 1.09004 * 109.47089 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47434 * 239.99974 * 2 1 3 27 27 H 1.08998 * 109.46954 * 59.99680 * 3 2 1 28 28 H 1.09000 * 109.47367 * 180.02562 * 3 2 1 29 29 H 1.09008 * 109.46987 * 299.99728 * 3 2 1 30 30 H 1.08002 * 120.72654 * 0.02562 * 5 4 2 31 31 H 0.97001 * 119.99783 * 179.97438 * 10 9 8 32 32 H 1.09004 * 109.46963 * 299.72132 * 11 10 9 33 33 H 1.08994 * 109.47567 * 59.72284 * 11 10 9 34 34 H 1.09004 * 109.47066 * 299.99732 * 12 11 10 35 35 H 1.09000 * 109.47665 * 59.99541 * 12 11 10 36 36 H 1.08990 * 109.47021 * 299.99845 * 13 12 11 37 37 H 1.09002 * 109.46620 * 60.00037 * 13 12 11 38 38 H 0.96996 * 120.00642 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1677 -0.0271 2.4279 6 6 2.6333 -0.7191 3.5373 7 17 2.8209 0.0891 5.0621 8 7 2.9325 -2.0034 3.4179 9 6 2.7911 -2.6261 2.2573 10 7 3.1137 -3.9690 2.1676 11 6 3.5990 -4.6862 3.3492 12 6 3.8738 -6.1460 2.9826 13 6 4.3813 -6.8949 4.2165 14 6 4.6513 -8.3329 3.8555 15 1 4.4786 -8.6781 2.8469 16 6 5.1197 -9.2077 4.8128 17 7 5.3559 -10.4625 4.4977 18 14 5.4191 -8.6106 6.5573 19 1 4.1817 -8.7854 7.3595 20 1 6.5203 -9.3978 7.1678 21 1 5.7932 -7.1737 6.5313 22 7 2.3536 -1.9928 1.1787 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.6766 1.9564 0.8899 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8901 30 1 1.9158 1.0208 2.4969 31 1 3.0142 -4.4364 1.3234 32 1 4.5190 -4.2214 3.7039 33 1 2.8446 -4.6447 4.1348 34 1 2.9539 -6.6108 2.6279 35 1 4.6282 -6.1876 2.1970 36 1 5.3012 -6.4300 4.5708 37 1 3.6271 -6.8534 5.0024 38 1 5.6851 -11.0781 5.1712 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168428761.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:25 Heat of formation + Delta-G solvation = 22.887213 kcal Electronic energy + Delta-G solvation = -19126.318233 eV Core-core repulsion = 16029.093647 eV Total energy + Delta-G solvation = -3097.224586 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.22774 -37.23690 -37.09452 -35.69003 -33.69332 -32.99843 -31.71877 -30.08578 -27.60066 -27.01470 -24.91169 -23.76915 -22.64498 -20.66519 -20.34178 -18.15826 -17.56536 -16.71756 -16.13324 -15.74414 -15.06722 -14.78625 -14.67348 -14.44387 -14.38164 -13.93996 -13.51889 -12.77642 -12.70603 -12.58270 -12.14124 -11.99596 -11.89731 -11.73058 -11.59582 -11.34790 -11.12280 -10.96696 -10.89994 -10.40587 -10.25469 -10.02707 -9.82831 -9.72210 -9.34008 -9.23947 -8.56228 -8.12104 -6.06790 -4.05705 0.83518 0.99299 1.44686 2.87941 3.30781 3.38344 3.42398 3.63932 3.83624 4.42496 4.43788 4.52748 4.65834 4.77176 5.00238 5.05685 5.20159 5.25845 5.27136 5.43537 5.45095 5.52003 5.62868 5.65314 5.85537 5.85871 5.95224 5.98782 6.41963 6.42525 6.72907 6.74720 6.95415 7.21057 7.34569 7.43844 7.75092 8.19966 8.49729 8.97142 9.55202 11.06474 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.023117 B = 0.003244 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.949670 B = 8628.552827 C = 9663.057554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.047 4.047 3 C -0.147 4.147 4 C 0.241 3.759 5 C -0.284 4.284 6 C 0.271 3.729 7 Cl -0.022 7.022 8 N -0.567 5.567 9 C 0.589 3.411 10 N -0.684 5.684 11 C 0.128 3.872 12 C -0.114 4.114 13 C -0.009 4.009 14 C -0.522 4.522 15 H 0.072 0.928 16 C 0.067 3.933 17 N -0.903 5.903 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.264 1.264 22 N -0.569 5.569 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.096 0.904 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.151 0.849 31 H 0.417 0.583 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.019 0.981 37 H 0.015 0.985 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.749 26.373 -6.970 28.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.066 4.066 3 C -0.205 4.205 4 C 0.091 3.909 5 C -0.311 4.311 6 C 0.096 3.904 7 Cl 0.007 6.993 8 N -0.293 5.293 9 C 0.232 3.768 10 N -0.319 5.319 11 C 0.005 3.995 12 C -0.152 4.152 13 C -0.047 4.047 14 C -0.560 4.560 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.542 5.542 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.189 1.189 22 N -0.293 5.293 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.115 0.885 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.169 0.831 31 H 0.255 0.745 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.323 25.112 -6.631 27.273 hybrid contribution 0.044 0.772 1.019 1.279 sum -8.278 25.884 -5.612 27.749 Atomic orbital electron populations 1.21798 0.92903 1.02717 1.02492 1.20134 0.96635 0.95584 0.94260 1.21924 1.01586 0.94352 1.02654 1.21339 0.87406 0.88048 0.94089 1.22009 1.12800 1.03365 0.92938 1.21632 0.91562 0.89224 0.88012 1.98424 1.95405 1.75948 1.29543 1.67178 1.25731 1.09650 1.26764 1.19132 0.87007 0.87486 0.83176 1.44594 1.68145 1.04087 1.15044 1.21718 0.99167 0.92710 0.85882 1.21730 1.01381 0.91012 1.01127 1.19484 0.96019 0.96189 0.92998 1.21092 1.44208 0.92203 0.98539 0.90986 1.25027 0.94812 0.94723 0.98894 1.69911 1.45886 1.03893 1.34493 0.86776 0.78172 0.79430 0.84938 1.20231 1.21363 1.18859 1.67771 1.20667 1.10548 1.30275 0.92207 0.91412 0.92059 0.88533 0.91834 0.92146 0.91452 0.83145 0.74542 0.91571 0.91591 0.92003 0.91972 0.96259 0.96704 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.18 37.16 0.34 -0.59 16 2 C -0.05 -0.36 3.27 -91.77 -0.30 -0.66 16 3 C -0.15 -0.83 8.64 37.16 0.32 -0.51 16 4 C 0.24 2.69 5.82 -82.28 -0.48 2.21 16 5 C -0.28 -3.03 9.06 -39.27 -0.36 -3.39 16 6 C 0.27 3.55 7.33 -17.10 -0.13 3.42 16 7 Cl -0.02 -0.25 29.15 -51.86 -1.51 -1.76 16 8 N -0.57 -8.85 9.58 -11.03 -0.11 -8.96 16 9 C 0.59 9.02 8.42 -322.82 -2.72 6.30 16 10 N -0.68 -10.24 5.70 -62.31 -0.36 -10.59 16 11 C 0.13 2.12 5.65 -4.04 -0.02 2.10 16 12 C -0.11 -2.15 5.27 -26.73 -0.14 -2.29 16 13 C -0.01 -0.21 4.04 -27.88 -0.11 -0.32 16 14 C -0.52 -14.78 9.66 -34.44 -0.33 -15.11 16 15 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 16 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 17 N -0.90 -27.87 13.96 55.43 0.77 -27.09 16 18 Si 0.88 21.75 27.47 -169.99 -4.67 17.09 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 21 H -0.26 -6.27 6.54 56.52 0.37 -5.91 16 22 N -0.57 -7.85 10.39 -10.17 -0.11 -7.95 16 23 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.31 6.57 -51.93 -0.34 -0.03 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.29 8.14 -51.92 -0.42 -0.14 16 30 H 0.15 1.17 6.43 -52.49 -0.34 0.83 16 31 H 0.42 5.60 8.59 -40.82 -0.35 5.25 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 37 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 38 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 332.89 15.07 5.02 5.02 Total: -1.00 -31.49 332.89 -10.59 -42.08 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.61 Total: -0.83 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -4.02 Total: -7.00 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 0.21 Total: -54.59 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.09 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.51 Total: -1.76 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.49 -10.59 -42.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168428761.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.964 kcal (2) G-P(sol) polarization free energy of solvation -31.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds