Wall clock time and date at job start Tue Mar 31 2020 06:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47210 * 2 1 4 4 C 1.50698 * 109.47021 * 180.02562 * 3 2 1 5 5 C 1.38532 * 120.39113 * 124.99485 * 4 3 2 6 6 C 1.38781 * 118.54592 * 180.02562 * 5 4 3 7 7 Cl 1.73595 * 120.41872 * 179.97438 * 6 5 4 8 8 N 1.32407 * 119.16356 * 0.02562 * 6 5 4 9 9 C 1.32472 * 120.72042 * 359.97438 * 8 6 5 10 10 N 1.38409 * 119.21163 * 179.97438 * 9 8 6 11 11 C 1.46498 * 119.99772 * 0.28212 * 10 9 8 12 12 C 1.52996 * 109.47059 * 179.72336 * 11 10 9 13 13 C 1.53003 * 109.47301 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47008 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00362 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99653 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00420 * 0.02562 * 16 14 13 18 18 Si 1.86810 * 119.99928 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47172 * 90.00092 * 18 16 14 20 20 H 1.48503 * 109.46928 * 209.99961 * 18 16 14 21 21 H 1.48499 * 109.46876 * 329.99803 * 18 16 14 22 22 N 1.32304 * 120.39597 * 305.29355 * 4 3 2 23 23 H 1.08995 * 109.46878 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46836 * 300.00414 * 1 2 3 25 25 H 1.08998 * 109.46682 * 60.00132 * 1 2 3 26 26 H 1.09000 * 109.46836 * 239.99586 * 2 1 3 27 27 H 1.08998 * 109.46682 * 119.99868 * 2 1 3 28 28 H 1.08992 * 109.47263 * 59.99450 * 3 2 1 29 29 H 1.09006 * 109.46593 * 299.99581 * 3 2 1 30 30 H 1.08002 * 120.72633 * 0.04987 * 5 4 3 31 31 H 0.97001 * 119.99783 * 179.97438 * 10 9 8 32 32 H 1.09004 * 109.46963 * 299.72132 * 11 10 9 33 33 H 1.08994 * 109.47567 * 59.72284 * 11 10 9 34 34 H 1.09004 * 109.47066 * 299.99732 * 12 11 10 35 35 H 1.09000 * 109.47665 * 59.99541 * 12 11 10 36 36 H 1.08990 * 109.47021 * 299.99845 * 13 12 11 37 37 H 1.09002 * 109.46620 * 60.00037 * 13 12 11 38 38 H 0.97000 * 120.00497 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 6 4.2475 2.1279 -0.9797 6 6 5.6346 2.1018 -0.9440 7 17 6.5608 2.9432 -2.1472 8 7 6.2427 1.4261 0.0187 9 6 5.5418 0.7814 0.9396 10 7 6.2096 0.0845 1.9317 11 6 7.6742 0.0710 1.9582 12 6 8.1551 -0.7589 3.1501 13 6 9.6848 -0.7736 3.1775 14 6 10.1584 -1.5906 4.3519 15 1 9.4402 -2.0535 5.0125 16 6 11.5086 -1.7480 4.5825 17 7 12.3832 -1.1848 3.7778 18 14 12.0957 -2.7614 6.0379 19 1 12.2541 -4.1783 5.6228 20 1 13.4009 -2.2357 6.5126 21 1 11.0988 -2.6754 7.1351 22 7 4.2169 0.7830 0.9304 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6768 1.9563 -0.8901 30 1 3.7255 2.6710 -1.7537 31 1 5.7077 -0.3912 2.6119 32 1 8.0503 -0.3683 1.0342 33 1 8.0454 1.0915 2.0527 34 1 7.7790 -0.3196 4.0741 35 1 7.7840 -1.7794 3.0557 36 1 10.0605 -1.2131 2.2536 37 1 10.0562 0.2468 3.2718 38 1 13.3331 -1.2959 3.9398 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168429093.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:29 Heat of formation + Delta-G solvation = 15.226556 kcal Electronic energy + Delta-G solvation = -18880.701536 eV Core-core repulsion = 15783.144759 eV Total energy + Delta-G solvation = -3097.556777 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.10724 -37.07742 -36.81691 -35.45354 -33.66675 -33.09313 -31.90665 -30.23700 -27.80058 -26.60660 -23.95199 -23.56096 -22.25213 -21.25457 -20.45561 -18.18600 -17.35129 -16.32119 -15.88029 -15.70653 -15.26242 -14.85103 -14.58953 -14.46041 -14.37244 -14.13715 -13.49239 -12.70594 -12.57690 -12.31234 -12.00731 -11.84581 -11.77064 -11.56907 -11.47011 -11.10408 -10.96558 -10.92037 -10.72121 -10.58326 -10.30824 -10.18256 -9.75824 -9.50774 -9.26278 -9.14327 -8.37966 -8.05113 -6.02593 -4.05680 0.88935 1.05013 1.51221 2.96036 3.30679 3.37052 3.40132 3.69811 3.95801 4.43384 4.47739 4.63810 4.76119 4.78626 5.00701 5.10923 5.21581 5.33301 5.40619 5.43784 5.50402 5.65671 5.73764 5.75148 5.91247 6.00114 6.07237 6.13511 6.57227 6.57522 6.81833 6.92204 7.06044 7.51204 7.62307 7.74483 7.95998 8.26449 8.37190 9.00866 9.58606 11.08695 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.018534 B = 0.003062 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.413813 B = 9141.544493 C =10550.420742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.068 4.068 4 C 0.235 3.765 5 C -0.286 4.286 6 C 0.272 3.728 7 Cl -0.021 7.021 8 N -0.565 5.565 9 C 0.589 3.411 10 N -0.684 5.684 11 C 0.130 3.870 12 C -0.122 4.122 13 C 0.026 3.974 14 C -0.523 4.523 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 N -0.569 5.569 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.149 0.851 31 H 0.415 0.585 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.110 6.975 -11.114 25.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.106 4.106 4 C 0.085 3.915 5 C -0.314 4.314 6 C 0.096 3.904 7 Cl 0.007 6.993 8 N -0.292 5.292 9 C 0.232 3.768 10 N -0.318 5.318 11 C 0.007 3.993 12 C -0.160 4.160 13 C -0.012 4.012 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 N -0.293 5.293 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.167 0.833 31 H 0.253 0.747 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.077 6.529 -10.484 24.429 hybrid contribution 0.144 -0.138 0.229 0.304 sum -20.933 6.391 -10.255 24.170 Atomic orbital electron populations 1.21778 0.95415 1.01910 1.01804 1.21438 0.95672 0.95151 1.03226 1.20658 0.87078 0.99054 1.03839 1.21355 0.96756 0.86647 0.86725 1.22018 0.92845 1.10781 1.05736 1.21636 0.88682 0.90599 0.89435 1.98425 1.75114 1.74210 1.51533 1.67193 1.41185 1.14973 1.05811 1.19150 0.84318 0.86812 0.86523 1.44664 1.07754 1.52152 1.27252 1.21717 0.75548 1.01421 1.00569 1.21917 1.01057 0.98089 0.94927 1.19012 0.87122 0.97591 0.97457 1.21199 0.91673 1.31750 1.11465 0.92629 1.25026 0.96971 0.95869 0.96568 1.69963 1.01598 1.44125 1.37602 0.86581 0.78166 0.80359 0.82815 1.20645 1.21192 1.19873 1.67723 1.07212 1.25853 1.28481 0.92522 0.92550 0.92732 0.92045 0.90547 0.89153 0.89628 0.83324 0.74715 0.91553 0.91563 0.92620 0.92621 0.96224 0.96222 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.12 -0.90 5.80 -26.73 -0.16 -1.05 16 3 C -0.07 -0.52 5.65 -27.88 -0.16 -0.67 16 4 C 0.23 2.64 6.21 -82.28 -0.51 2.13 16 5 C -0.29 -3.14 9.60 -39.27 -0.38 -3.52 16 6 C 0.27 3.70 7.33 -17.10 -0.13 3.57 16 7 Cl -0.02 -0.25 29.15 -51.86 -1.51 -1.77 16 8 N -0.57 -9.16 9.58 -11.03 -0.11 -9.27 16 9 C 0.59 9.25 8.43 -322.83 -2.72 6.53 16 10 N -0.68 -10.59 5.70 -62.32 -0.36 -10.95 16 11 C 0.13 2.29 5.65 -4.04 -0.02 2.27 16 12 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 13 C 0.03 0.66 4.97 -27.88 -0.14 0.52 16 14 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 18 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 N -0.57 -7.87 10.04 -10.17 -0.10 -7.97 16 23 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.71 7.98 -51.93 -0.41 0.29 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.46 7.93 -51.93 -0.41 0.05 16 30 H 0.15 1.17 8.00 -52.49 -0.42 0.75 16 31 H 0.42 5.73 8.59 -40.82 -0.35 5.38 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 340.12 15.07 5.13 5.13 Total: -1.00 -30.83 340.12 -11.41 -42.24 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.79 Total: -1.14 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -4.39 Total: -6.71 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.17 Total: -54.30 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.51 Total: -1.77 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.83 -11.41 -42.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168429093.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.470 kcal (2) G-P(sol) polarization free energy of solvation -30.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds