Wall clock time and date at job start Tue Mar 31 2020 05:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86798 * 120.00093 * 2 1 4 4 H 1.48504 * 109.47049 * 270.00010 * 3 2 1 5 5 H 1.48497 * 109.47171 * 30.00193 * 3 2 1 6 6 H 1.48496 * 109.46960 * 150.00218 * 3 2 1 7 7 C 1.40119 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99928 * 179.97438 * 7 2 1 9 9 C 1.40828 * 120.00024 * 359.97438 * 7 2 1 10 10 N 1.33914 * 120.27501 * 359.97438 * 9 7 2 11 11 C 1.31712 * 119.89075 * 180.02562 * 10 9 7 12 12 C 1.38968 * 120.47899 * 0.02562 * 11 10 9 13 13 N 1.32245 * 120.56728 * 359.74346 * 12 11 10 14 14 C 1.32618 * 120.08461 * 0.50886 * 13 12 11 15 15 N 1.37939 * 120.23524 * 179.77082 * 14 13 12 16 16 C 1.46505 * 119.99792 * 351.98964 * 15 14 13 17 17 C 1.50698 * 115.55089 * 293.48404 * 16 15 14 18 18 C 1.38604 * 120.07644 * 352.57141 * 17 16 15 19 19 C 1.38886 * 117.96513 * 180.02562 * 18 17 16 20 20 C 1.38604 * 117.97392 * 0.02562 * 19 18 17 21 21 N 1.31935 * 119.84128 * 359.97438 * 20 19 18 22 22 N 1.28350 * 122.18642 * 359.71647 * 21 20 19 23 23 C 1.52994 * 117.49437 * 147.81338 * 16 15 14 24 24 C 1.53003 * 117.49382 * 79.15447 * 16 15 14 25 25 H 0.97001 * 120.00184 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.75898 * 180.02562 * 11 10 9 27 27 H 1.08004 * 119.71346 * 180.02562 * 12 11 10 28 28 H 0.96998 * 119.99920 * 171.71847 * 15 14 13 29 29 H 1.08000 * 121.01925 * 359.97438 * 18 17 16 30 30 H 1.07998 * 121.01254 * 180.02562 * 19 18 17 31 31 H 1.07997 * 120.08073 * 180.02562 * 20 19 18 32 32 H 1.09007 * 117.50082 * 359.97438 * 23 16 15 33 33 H 1.08998 * 117.50114 * 145.02437 * 23 16 15 34 34 H 1.08994 * 117.49698 * 214.97464 * 24 16 15 35 35 H 1.08999 * 117.50219 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4389 2.6526 0.7001 6 1 3.5389 1.4401 0.7000 7 6 2.0079 -1.2135 0.0005 8 1 3.0879 -1.2135 0.0001 9 6 1.3038 -2.4331 0.0016 10 7 -0.0354 -2.4395 0.0027 11 6 -0.6863 -3.5845 0.0042 12 6 0.0065 -4.7892 0.0053 13 7 1.3289 -4.8045 -0.0003 14 6 2.0069 -3.6648 0.0032 15 7 3.3863 -3.6771 0.0021 16 6 4.1076 -4.9407 0.1740 17 6 3.9585 -5.5960 1.5229 18 6 3.3083 -4.9305 2.5503 19 6 3.1963 -5.5751 3.7754 20 6 3.7419 -6.8436 3.8950 21 7 4.3438 -7.3995 2.8609 22 7 4.4422 -6.8063 1.7270 23 6 5.4536 -5.0881 -0.5381 24 6 4.2304 -5.8555 -1.0462 25 1 -0.4850 0.8400 -0.0004 26 1 -1.7663 -3.5872 0.0046 27 1 -0.5397 -5.7209 0.0061 28 1 3.8786 -2.8498 -0.1163 29 1 2.9021 -3.9408 2.4030 30 1 2.6991 -5.1023 4.6095 31 1 3.6739 -7.3760 4.8322 32 1 5.8023 -4.2452 -1.1349 33 1 6.2313 -5.6595 -0.0313 34 1 4.2039 -6.9314 -0.8733 35 1 3.7743 -5.5175 -1.9767 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168517015.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:37 Heat of formation + Delta-G solvation = 143.549184 kcal Electronic energy + Delta-G solvation = -21723.529298 eV Core-core repulsion = 18530.429513 eV Total energy + Delta-G solvation = -3193.099785 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.113 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.82301 -39.13292 -37.48241 -34.06787 -33.42935 -32.67558 -31.77186 -31.48419 -28.65997 -26.01579 -24.80812 -24.16492 -22.53904 -22.29155 -21.57168 -20.04692 -17.70457 -17.10096 -16.96026 -16.64751 -16.19420 -15.28607 -14.99801 -14.58842 -14.39859 -14.17834 -13.91685 -13.28659 -13.01975 -12.80794 -12.48806 -12.12345 -11.53521 -11.41719 -11.24015 -11.00670 -10.96740 -10.72584 -10.50113 -10.30372 -9.97637 -9.90674 -9.59746 -9.46039 -9.40601 -8.98466 -8.65071 -7.44123 -6.99031 -6.51122 -4.55262 1.08248 1.17833 2.55436 2.97210 2.99056 3.00684 3.15513 3.66225 3.77622 3.80858 4.33597 4.37939 4.63769 4.65174 4.83519 5.00541 5.24181 5.30275 5.32462 5.41089 5.66577 5.80184 5.84950 6.00899 6.06942 6.14688 6.26806 6.29287 6.35121 6.46819 6.54328 6.67754 6.90284 6.97033 7.55011 7.85449 7.97641 8.24260 8.51431 8.74097 8.97468 9.36610 9.89048 10.13769 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.018104 B = 0.005699 C = 0.005404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.258554 B = 4912.166725 C = 5180.506012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.711 5.711 2 C 0.069 3.931 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.423 4.423 8 H 0.083 0.917 9 C 0.197 3.803 10 N -0.447 5.447 11 C 0.037 3.963 12 C -0.087 4.087 13 N -0.481 5.481 14 C 0.250 3.750 15 N -0.690 5.690 16 C 0.166 3.834 17 C 0.127 3.873 18 C -0.086 4.086 19 C -0.125 4.125 20 C 0.023 3.977 21 N -0.248 5.248 22 N -0.249 5.249 23 C -0.160 4.160 24 C -0.142 4.142 25 H 0.275 0.725 26 H 0.124 0.876 27 H 0.121 0.879 28 H 0.410 0.590 29 H 0.150 0.850 30 H 0.144 0.856 31 H 0.166 0.834 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.490 -3.760 3.784 8.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.333 5.333 2 C -0.157 4.157 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.457 4.457 8 H 0.101 0.899 9 C 0.063 3.937 10 N -0.165 5.165 11 C -0.127 4.127 12 C -0.242 4.242 13 N -0.201 5.201 14 C 0.005 3.995 15 N -0.331 5.331 16 C 0.074 3.926 17 C -0.018 4.018 18 C -0.116 4.116 19 C -0.154 4.154 20 C -0.141 4.141 21 N -0.089 5.089 22 N -0.091 5.091 23 C -0.198 4.198 24 C -0.181 4.181 25 H 0.087 0.913 26 H 0.142 0.858 27 H 0.139 0.861 28 H 0.249 0.751 29 H 0.168 0.832 30 H 0.162 0.838 31 H 0.183 0.817 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.941 -5.140 3.207 9.213 hybrid contribution -0.656 2.285 0.684 2.473 sum 6.285 -2.855 3.891 7.924 Atomic orbital electron populations 1.70089 1.07205 1.28106 1.27901 1.26015 0.94914 1.00994 0.93809 0.86328 0.80417 0.80821 0.79359 1.19315 1.20041 1.18472 1.19258 0.93857 0.89324 1.43261 0.89879 1.19042 0.89328 0.90996 0.94300 1.69530 1.06220 1.24535 1.16170 1.23196 0.99744 0.90238 0.99522 1.22295 0.89659 0.97494 1.14736 1.67360 1.08696 1.28334 1.15668 1.19201 0.84483 0.90996 1.04855 1.42968 1.01797 1.05852 1.82504 1.18190 0.97332 0.89156 0.87967 1.22070 0.92697 0.91729 0.95353 1.22257 0.95032 1.02054 0.92224 1.22370 0.98536 0.95786 0.98671 1.24131 0.95955 0.94162 0.99902 1.72944 1.12316 1.27937 0.95698 1.72715 1.15617 1.06953 1.13850 1.23327 0.90595 1.03215 1.02668 1.23229 0.99162 0.98423 0.97313 0.91339 0.85817 0.86125 0.75112 0.83234 0.83771 0.81692 0.88077 0.87878 0.87962 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.83 11.48 55.56 0.64 -17.19 16 2 C 0.07 1.61 5.50 -17.31 -0.10 1.52 16 3 Si 0.91 17.13 29.56 -169.99 -5.03 12.11 16 4 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 5 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 7 C -0.42 -10.10 8.88 -37.90 -0.34 -10.43 16 8 H 0.08 1.77 6.15 -52.49 -0.32 1.45 16 9 C 0.20 4.94 6.56 -84.61 -0.56 4.38 16 10 N -0.45 -11.72 8.03 -10.79 -0.09 -11.81 16 11 C 0.04 0.86 11.21 -17.33 -0.19 0.67 16 12 C -0.09 -1.97 11.22 -17.10 -0.19 -2.16 16 13 N -0.48 -11.09 9.46 -11.67 -0.11 -11.20 16 14 C 0.25 5.66 6.01 -154.82 -0.93 4.73 16 15 N -0.69 -13.09 4.80 -48.29 -0.23 -13.32 16 16 C 0.17 2.86 2.15 -132.97 -0.29 2.58 16 17 C 0.13 2.27 6.23 -82.42 -0.51 1.75 16 18 C -0.09 -1.49 9.13 -39.21 -0.36 -1.85 16 19 C -0.12 -1.78 10.21 -39.21 -0.40 -2.18 16 20 C 0.02 0.32 11.31 -17.37 -0.20 0.12 16 21 N -0.25 -4.18 11.50 30.55 0.35 -3.83 16 22 N -0.25 -4.46 10.69 33.59 0.36 -4.11 16 23 C -0.16 -2.23 10.04 -26.69 -0.27 -2.50 16 24 C -0.14 -2.29 9.97 -26.69 -0.27 -2.56 16 25 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 26 H 0.12 2.58 8.06 -52.48 -0.42 2.16 16 27 H 0.12 2.45 8.06 -52.48 -0.42 2.02 16 28 H 0.41 7.25 6.86 -40.82 -0.28 6.97 16 29 H 0.15 2.81 6.66 -52.49 -0.35 2.46 16 30 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.17 1.61 8.06 -52.49 -0.42 1.18 16 32 H 0.10 1.24 8.14 -51.92 -0.42 0.82 16 33 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.10 1.67 7.85 -51.93 -0.41 1.26 16 35 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 307.73 15.07 4.64 4.64 Total: -1.00 -29.35 307.73 -7.51 -36.86 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -3.45 Total: 13.78 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -4.59 Total: -5.93 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: 0.92 Total: -61.46 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.11 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.35 -7.51 -36.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168517015.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.412 kcal (2) G-P(sol) polarization free energy of solvation -29.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds