Wall clock time and date at job start Tue Mar 31 2020 06:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32265 * 119.90983 * 2 1 4 4 C 1.31926 * 120.08553 * 180.02562 * 3 2 1 5 5 C 1.50705 * 120.05300 * 179.97438 * 4 3 2 6 6 C 1.39303 * 119.89588 * 0.02562 * 4 3 2 7 7 N 1.39148 * 120.09718 * 179.97438 * 6 4 3 8 8 C 1.38383 * 120.00396 * 180.58104 * 7 6 4 9 9 C 1.38966 * 120.00297 * 59.02388 * 8 7 6 10 10 H 1.08002 * 119.99863 * 200.72657 * 9 8 7 11 11 C 1.40851 * 119.99749 * 20.73389 * 9 8 7 12 12 N 1.30325 * 120.00139 * 14.12900 * 11 9 8 13 13 Si 1.86803 * 119.99448 * 194.13638 * 11 9 8 14 14 H 1.48496 * 109.47347 * 89.99956 * 13 11 9 15 15 H 1.48501 * 109.46383 * 209.99546 * 13 11 9 16 16 H 1.48498 * 109.47158 * 329.99188 * 13 11 9 17 17 C 1.41147 * 119.99368 * 239.03049 * 8 7 6 18 18 C 1.43208 * 119.99506 * 185.35077 * 17 8 7 19 19 N 8.04546 * 151.83443 * 166.17169 * 2 1 3 20 20 C 1.43196 * 120.00269 * 5.34931 * 17 8 7 21 21 N 6.60592 * 152.43352 * 89.90737 * 2 1 3 22 22 N 1.32661 * 119.81923 * 0.02562 * 6 4 3 23 23 C 1.32227 * 119.90904 * 359.71324 * 22 6 4 24 24 C 1.50695 * 119.95015 * 180.27223 * 23 22 6 25 25 H 1.09000 * 109.47005 * 89.99419 * 1 2 3 26 26 H 1.08994 * 109.46701 * 329.99447 * 1 2 3 27 27 H 1.09002 * 109.46962 * 209.99716 * 1 2 3 28 28 H 1.08998 * 109.46920 * 90.00051 * 5 4 3 29 29 H 1.09004 * 109.47098 * 209.99618 * 5 4 3 30 30 H 1.08995 * 109.47474 * 329.99900 * 5 4 3 31 31 H 0.97002 * 119.99762 * 0.57034 * 7 6 4 32 32 H 0.96999 * 119.99976 * 184.97929 * 12 11 9 33 33 H 1.08997 * 109.47201 * 264.13307 * 24 23 22 34 34 H 1.09000 * 109.47189 * 24.13597 * 24 23 22 35 35 H 1.09000 * 109.47575 * 144.13463 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1666 1.1465 0.0000 4 6 3.4858 1.1505 -0.0005 5 6 4.2365 2.4573 -0.0011 6 6 4.1838 -0.0550 -0.0016 7 7 5.5753 -0.0556 -0.0027 8 6 6.2668 -1.2542 -0.0159 9 6 6.0767 -2.1547 -1.0572 10 1 6.3309 -3.1959 -0.9239 11 6 5.5525 -1.7094 -2.2863 12 7 5.5030 -0.4341 -2.5500 13 14 4.9282 -2.9470 -3.5385 14 1 3.4855 -3.2067 -3.3010 15 1 5.1143 -2.4027 -4.9076 16 1 5.6885 -4.2153 -3.4026 17 6 7.1650 -1.5622 1.0284 18 6 7.9653 -2.7477 0.9580 19 7 8.5998 -3.6876 0.9077 20 6 7.2761 -0.6893 2.1581 21 7 7.3630 0.0049 3.0571 22 7 3.5183 -1.2026 -0.0026 23 6 2.1961 -1.1980 0.0031 24 6 1.4392 -2.5011 0.0082 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3632 0.8899 0.5139 27 1 -0.3633 -0.8900 0.5138 28 1 4.4179 2.7725 1.0264 29 1 5.1891 2.3289 -0.5152 30 1 3.6457 3.2156 -0.5148 31 1 6.0607 0.7842 0.0057 32 1 5.0769 -0.1233 -3.3640 33 1 1.1614 -2.7639 -1.0125 34 1 2.0695 -3.2857 0.4267 35 1 0.5392 -2.3962 0.6140 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169078240.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:37 Heat of formation + Delta-G solvation = 95.650626 kcal Electronic energy + Delta-G solvation = -21737.016213 eV Core-core repulsion = 18541.839391 eV Total energy + Delta-G solvation = -3195.176822 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.113 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.76012 -37.60911 -35.38871 -34.69810 -34.49607 -33.98636 -32.62394 -30.39257 -29.74154 -27.65261 -27.10847 -24.90870 -22.95108 -21.41185 -20.99988 -19.08413 -17.79937 -17.24805 -16.41431 -16.14257 -15.15359 -14.95352 -14.62509 -13.83043 -13.33878 -13.30670 -12.84053 -12.76946 -12.74221 -12.58135 -12.36344 -12.22023 -12.04909 -12.00166 -11.78375 -11.63964 -11.56381 -11.46146 -11.43095 -11.04572 -10.89447 -10.82621 -10.80958 -10.37081 -10.06431 -9.46092 -8.48608 -8.21536 -7.77551 -6.89666 -5.39828 1.42933 1.77630 2.27225 2.69655 2.75286 2.89230 3.40364 3.66628 3.88364 4.06568 4.20992 4.30276 4.33932 4.54815 4.77700 4.97055 5.20052 5.26951 5.38504 5.54153 5.61799 5.66496 5.73482 5.82702 5.89858 5.92267 6.01778 6.08471 6.20065 6.25432 6.34881 6.41021 6.79385 7.08638 7.30245 7.54026 7.75148 7.86416 8.23974 8.25857 8.69605 8.98218 9.15431 9.18909 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.012660 B = 0.008219 C = 0.006381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.176868 B = 3405.747244 C = 4387.163841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.011 4.011 3 N -0.408 5.408 4 C 0.015 3.985 5 C -0.089 4.089 6 C 0.398 3.602 7 N -0.630 5.630 8 C 0.382 3.618 9 C -0.346 4.346 10 H 0.110 0.890 11 C 0.082 3.918 12 N -0.727 5.727 13 Si 0.919 3.081 14 H -0.255 1.255 15 H -0.270 1.270 16 H -0.248 1.248 17 C -0.313 4.313 18 C 0.327 3.673 19 N -0.535 5.535 20 C 0.309 3.691 21 N -0.538 5.538 22 N -0.473 5.473 23 C 0.124 3.876 24 C -0.101 4.101 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.411 0.589 32 H 0.300 0.700 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.430 2.449 -5.272 12.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.152 4.152 3 N -0.123 5.123 4 C -0.135 4.135 5 C -0.147 4.147 6 C 0.159 3.841 7 N -0.256 5.256 8 C 0.278 3.722 9 C -0.373 4.373 10 H 0.127 0.873 11 C -0.149 4.149 12 N -0.345 5.345 13 Si 0.741 3.259 14 H -0.179 1.179 15 H -0.194 1.194 16 H -0.171 1.171 17 C -0.332 4.332 18 C 0.019 3.981 19 N -0.218 5.218 20 C 0.002 3.998 21 N -0.221 5.221 22 N -0.195 5.195 23 C -0.019 4.019 24 C -0.159 4.159 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.251 0.749 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.230 2.138 -4.158 11.247 hybrid contribution -0.351 0.071 -1.039 1.099 sum -10.581 2.210 -5.196 11.993 Atomic orbital electron populations 1.20474 0.88983 1.02671 1.02110 1.21441 0.97377 0.88973 1.07437 1.67772 1.07383 1.29246 1.07894 1.21354 0.90192 0.94916 1.07048 1.20478 0.99087 0.92759 1.02417 1.18789 0.85758 0.89480 0.90102 1.41468 1.00981 1.08141 1.74964 1.16639 0.84764 0.82117 0.88650 1.20147 1.26102 0.97978 0.93116 0.87260 1.26451 0.92035 0.96534 0.99922 1.69453 1.24055 1.16147 1.24872 0.86023 0.80930 0.81118 0.77847 1.17927 1.19431 1.17061 1.12862 1.20292 1.00173 0.99873 1.24620 0.90714 0.91115 0.91602 1.81012 1.15691 1.14017 1.11055 1.25357 0.91088 0.91865 0.91475 1.81195 1.14624 1.13528 1.12755 1.67994 1.07457 1.27408 1.16606 1.21715 0.89636 0.96035 0.94506 1.20714 0.99120 0.93369 1.02683 0.91521 0.91392 0.90997 0.91111 0.90772 0.90782 0.74900 0.88816 0.90581 0.90196 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 9.78 36.01 0.35 -0.62 16 2 C -0.01 -0.17 6.78 -82.42 -0.56 -0.73 16 3 N -0.41 -7.15 10.34 -5.39 -0.06 -7.20 16 4 C 0.01 0.26 6.81 -82.15 -0.56 -0.30 16 5 C -0.09 -1.29 9.75 36.01 0.35 -0.94 16 6 C 0.40 7.67 6.01 -154.59 -0.93 6.74 16 7 N -0.63 -12.23 3.26 -9.63 -0.03 -12.26 16 8 C 0.38 8.09 5.52 -83.53 -0.46 7.63 16 9 C -0.35 -7.27 7.65 -38.32 -0.29 -7.56 16 10 H 0.11 2.36 7.14 -52.49 -0.37 1.99 16 11 C 0.08 1.58 4.65 -17.20 -0.08 1.50 16 12 N -0.73 -13.89 11.25 55.60 0.63 -13.27 16 13 Si 0.92 15.36 29.59 -169.99 -5.03 10.33 16 14 H -0.26 -4.26 7.11 56.52 0.40 -3.86 16 15 H -0.27 -4.39 7.11 56.52 0.40 -3.99 16 16 H -0.25 -4.22 7.11 56.52 0.40 -3.81 16 17 C -0.31 -6.99 5.88 -104.94 -0.62 -7.60 16 18 C 0.33 7.63 13.96 -22.50 -0.31 7.32 16 19 N -0.54 -12.93 18.53 41.80 0.77 -12.16 16 20 C 0.31 7.06 14.83 -22.37 -0.33 6.73 16 21 N -0.54 -12.73 18.56 41.96 0.78 -11.95 16 22 N -0.47 -9.23 8.63 -8.45 -0.07 -9.30 16 23 C 0.12 2.07 6.78 -82.44 -0.56 1.51 16 24 C -0.10 -1.28 9.63 36.00 0.35 -0.93 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.67 6.02 -51.93 -0.31 0.36 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 1.03 6.57 -51.93 -0.34 0.68 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.41 7.42 6.82 -40.82 -0.28 7.14 16 32 H 0.30 5.32 8.29 -40.82 -0.34 4.98 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 0.76 6.20 -51.93 -0.32 0.44 16 LS Contribution 319.42 15.07 4.81 4.81 Total: -1.00 -26.37 319.42 -5.15 -31.53 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -3.30 Total: 6.74 kcal Atomic # 6 Polarization: 16.39 SS G_CDS: -3.65 Total: 12.74 kcal Atomic # 7 Polarization: -68.17 SS G_CDS: 2.02 Total: -66.15 kcal Atomic # 14 Polarization: 15.36 SS G_CDS: -5.03 Total: 10.33 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -26.37 -5.15 -31.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169078240.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.176 kcal (2) G-P(sol) polarization free energy of solvation -26.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds