Wall clock time and date at job start Tue Mar 31 2020 06:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32265 * 119.90983 * 2 1 4 4 C 1.31926 * 120.08553 * 180.02562 * 3 2 1 5 5 C 1.50705 * 120.05300 * 179.97438 * 4 3 2 6 6 C 1.39303 * 119.89588 * 0.02562 * 4 3 2 7 7 N 1.39148 * 120.09718 * 179.97438 * 6 4 3 8 8 C 1.38383 * 120.00396 * 180.58104 * 7 6 4 9 9 C 1.38966 * 120.00297 * 59.02388 * 8 7 6 10 10 H 1.08002 * 119.99863 * 200.72657 * 9 8 7 11 11 C 1.40851 * 119.99749 * 20.73389 * 9 8 7 12 12 N 1.30325 * 120.00139 * 14.12900 * 11 9 8 13 13 Si 1.86803 * 119.99448 * 194.13638 * 11 9 8 14 14 H 1.48496 * 109.47347 * 89.99956 * 13 11 9 15 15 H 1.48501 * 109.46383 * 209.99546 * 13 11 9 16 16 H 1.48498 * 109.47158 * 329.99188 * 13 11 9 17 17 C 1.41147 * 119.99368 * 239.03049 * 8 7 6 18 18 C 1.43208 * 119.99506 * 185.35077 * 17 8 7 19 19 N 8.04546 * 151.83443 * 166.17169 * 2 1 3 20 20 C 1.43196 * 120.00269 * 5.34931 * 17 8 7 21 21 N 6.60592 * 152.43352 * 89.90737 * 2 1 3 22 22 N 1.32661 * 119.81923 * 0.02562 * 6 4 3 23 23 C 1.32227 * 119.90904 * 359.71324 * 22 6 4 24 24 C 1.50695 * 119.95015 * 180.27223 * 23 22 6 25 25 H 1.09000 * 109.47005 * 89.99419 * 1 2 3 26 26 H 1.08994 * 109.46701 * 329.99447 * 1 2 3 27 27 H 1.09002 * 109.46962 * 209.99716 * 1 2 3 28 28 H 1.08998 * 109.46920 * 90.00051 * 5 4 3 29 29 H 1.09004 * 109.47098 * 209.99618 * 5 4 3 30 30 H 1.08995 * 109.47474 * 329.99900 * 5 4 3 31 31 H 0.97002 * 119.99762 * 0.57034 * 7 6 4 32 32 H 0.96999 * 119.99976 * 184.97929 * 12 11 9 33 33 H 1.08997 * 109.47201 * 264.13307 * 24 23 22 34 34 H 1.09000 * 109.47189 * 24.13597 * 24 23 22 35 35 H 1.09000 * 109.47575 * 144.13463 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1666 1.1465 0.0000 4 6 3.4858 1.1505 -0.0005 5 6 4.2365 2.4573 -0.0011 6 6 4.1838 -0.0550 -0.0016 7 7 5.5753 -0.0556 -0.0027 8 6 6.2668 -1.2542 -0.0159 9 6 6.0767 -2.1547 -1.0572 10 1 6.3309 -3.1959 -0.9239 11 6 5.5525 -1.7094 -2.2863 12 7 5.5030 -0.4341 -2.5500 13 14 4.9282 -2.9470 -3.5385 14 1 3.4855 -3.2067 -3.3010 15 1 5.1143 -2.4027 -4.9076 16 1 5.6885 -4.2153 -3.4026 17 6 7.1650 -1.5622 1.0284 18 6 7.9653 -2.7477 0.9580 19 7 8.5998 -3.6876 0.9077 20 6 7.2761 -0.6893 2.1581 21 7 7.3630 0.0049 3.0571 22 7 3.5183 -1.2026 -0.0026 23 6 2.1961 -1.1980 0.0031 24 6 1.4392 -2.5011 0.0082 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3632 0.8899 0.5139 27 1 -0.3633 -0.8900 0.5138 28 1 4.4179 2.7725 1.0264 29 1 5.1891 2.3289 -0.5152 30 1 3.6457 3.2156 -0.5148 31 1 6.0607 0.7842 0.0057 32 1 5.0769 -0.1233 -3.3640 33 1 1.1614 -2.7639 -1.0125 34 1 2.0695 -3.2857 0.4267 35 1 0.5392 -2.3962 0.6140 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169078240.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:36 Heat of formation + Delta-G solvation = 81.936043 kcal Electronic energy + Delta-G solvation = -21737.610922 eV Core-core repulsion = 18541.839391 eV Total energy + Delta-G solvation = -3195.771531 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.113 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.06923 -39.13500 -37.12039 -36.50800 -35.82550 -35.40625 -34.04601 -31.79138 -30.96504 -28.81794 -28.72194 -26.14917 -24.25886 -22.89289 -22.31449 -20.72532 -19.27374 -18.81552 -17.82802 -17.65533 -16.53808 -16.32906 -15.80140 -15.25190 -14.65590 -14.46894 -14.40324 -14.34675 -13.93991 -13.85391 -13.72384 -13.48755 -13.41955 -13.37493 -13.29788 -13.13923 -13.07551 -12.99528 -12.69681 -12.64002 -12.40069 -12.15698 -12.14599 -11.77668 -11.51577 -10.84237 -9.80521 -9.78950 -9.24062 -8.33095 -7.10407 0.11894 0.38553 0.81189 1.31712 1.44456 1.51522 2.01372 2.05631 2.20257 2.22399 2.55172 2.68889 2.96263 3.37862 3.40776 3.52779 3.70388 3.86786 4.15520 4.25640 4.43030 4.59752 4.66024 4.68289 4.74339 4.77330 4.85421 4.92530 5.03808 5.15888 5.18164 5.27648 5.40589 5.57151 5.81161 6.01277 6.17842 6.40187 6.70447 6.89783 7.17884 7.29811 7.37325 7.67928 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.012660 B = 0.008219 C = 0.006381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.176868 B = 3405.747244 C = 4387.163841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.009 4.009 3 N -0.423 5.423 4 C 0.003 3.997 5 C -0.085 4.085 6 C 0.376 3.624 7 N -0.632 5.632 8 C 0.377 3.623 9 C -0.346 4.346 10 H 0.098 0.902 11 C 0.058 3.942 12 N -0.725 5.725 13 Si 0.967 3.033 14 H -0.251 1.251 15 H -0.258 1.258 16 H -0.255 1.255 17 C -0.328 4.328 18 C 0.331 3.669 19 N -0.559 5.559 20 C 0.316 3.684 21 N -0.559 5.559 22 N -0.500 5.500 23 C 0.107 3.893 24 C -0.098 4.098 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.414 0.586 32 H 0.309 0.691 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.748 2.488 -6.577 15.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.151 4.151 3 N -0.138 5.138 4 C -0.145 4.145 5 C -0.143 4.143 6 C 0.138 3.862 7 N -0.259 5.259 8 C 0.273 3.727 9 C -0.373 4.373 10 H 0.116 0.884 11 C -0.173 4.173 12 N -0.343 5.343 13 Si 0.786 3.214 14 H -0.175 1.175 15 H -0.182 1.182 16 H -0.178 1.178 17 C -0.348 4.348 18 C 0.025 3.975 19 N -0.242 5.242 20 C 0.010 3.990 21 N -0.243 5.243 22 N -0.222 5.222 23 C -0.036 4.036 24 C -0.155 4.155 25 H 0.101 0.899 26 H 0.089 0.911 27 H 0.116 0.884 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.254 0.746 32 H 0.122 0.878 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.555 2.216 -5.455 13.867 hybrid contribution 0.211 0.078 -0.717 0.752 sum -12.343 2.293 -6.173 13.990 Atomic orbital electron populations 1.20617 0.85668 1.04142 1.03550 1.22207 0.99530 0.88344 1.05021 1.67895 1.07227 1.30064 1.08580 1.21720 0.90599 0.95470 1.06755 1.20498 0.99067 0.91795 1.02911 1.18957 0.85542 0.90194 0.91525 1.41335 1.01224 1.07498 1.75809 1.16623 0.84767 0.83032 0.88286 1.20256 1.25657 0.97497 0.93894 0.88354 1.26930 0.92095 0.97844 1.00453 1.69432 1.22828 1.16766 1.25274 0.85329 0.80410 0.79086 0.76562 1.17511 1.18194 1.17819 1.12953 1.21258 1.00135 1.00442 1.24809 0.90467 0.91146 0.91124 1.80989 1.16661 1.14759 1.11802 1.25430 0.90619 0.91628 0.91300 1.81177 1.15525 1.14244 1.13314 1.67973 1.09051 1.28021 1.17176 1.22413 0.89038 0.98079 0.94035 1.20838 0.99590 0.90971 1.04149 0.89912 0.91080 0.88398 0.90661 0.90503 0.89553 0.74622 0.87842 0.89094 0.91244 0.87328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.60 9.78 71.24 0.70 -0.90 16 2 C -0.01 -0.27 6.78 42.49 0.29 0.02 16 3 N -0.42 -14.15 10.34 -170.98 -1.77 -15.91 16 4 C 0.00 0.10 6.81 42.80 0.29 0.39 16 5 C -0.08 -2.39 9.75 71.24 0.69 -1.70 16 6 C 0.38 14.34 6.01 132.98 0.80 15.14 16 7 N -0.63 -24.64 3.26 -184.39 -0.60 -25.24 16 8 C 0.38 16.13 5.52 39.00 0.22 16.35 16 9 C -0.35 -14.53 7.65 23.08 0.18 -14.35 16 10 H 0.10 4.29 7.14 -2.91 -0.02 4.27 16 11 C 0.06 2.17 4.65 85.56 0.40 2.57 16 12 N -0.72 -26.86 11.25 21.98 0.25 -26.61 16 13 Si 0.97 29.95 29.59 68.60 2.03 31.98 16 14 H -0.25 -7.60 7.11 99.48 0.71 -6.90 16 15 H -0.26 -7.50 7.11 99.48 0.71 -6.79 16 16 H -0.25 -8.17 7.11 99.48 0.71 -7.46 16 17 C -0.33 -14.92 5.88 -20.07 -0.12 -15.04 16 18 C 0.33 15.71 13.96 88.34 1.23 16.95 16 19 N -0.56 -27.37 18.53 18.99 0.35 -27.01 16 20 C 0.32 14.67 14.83 88.29 1.31 15.98 16 21 N -0.56 -26.73 18.56 19.04 0.35 -26.38 16 22 N -0.50 -19.16 8.63 -180.64 -1.56 -20.72 16 23 C 0.11 3.38 6.78 42.49 0.29 3.66 16 24 C -0.10 -2.21 9.63 71.23 0.69 -1.52 16 25 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.10 1.39 6.02 -2.39 -0.01 1.37 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.08 2.09 6.57 -2.38 -0.02 2.08 16 30 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.41 15.10 6.82 -92.71 -0.63 14.47 16 32 H 0.31 10.41 8.29 -92.71 -0.77 9.64 16 33 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.11 1.70 6.20 -2.39 -0.01 1.69 16 Total: -1.00 -56.16 319.42 6.55 -49.61 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.54 Total: 22.74 kcal Atomic # 6 Polarization: 30.60 SS G_CDS: 6.96 Total: 37.56 kcal Atomic # 7 Polarization: -138.91 SS G_CDS: -2.98 Total: -141.89 kcal Atomic # 14 Polarization: 29.95 SS G_CDS: 2.03 Total: 31.98 kcal Total: -56.16 6.55 -49.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169078240.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.543 kcal (2) G-P(sol) polarization free energy of solvation -56.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds