Wall clock time and date at job start Tue Mar 31 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46692 * 2 1 4 4 C 1.50699 * 109.47202 * 180.02562 * 3 2 1 5 5 C 1.38161 * 120.40535 * 122.69489 * 4 3 2 6 6 C 1.39579 * 118.33409 * 180.02562 * 5 4 3 7 7 N 1.38751 * 120.52674 * 180.02562 * 6 5 4 8 8 C 1.38449 * 120.00326 * 5.61910 * 7 6 5 9 9 C 1.38944 * 119.99753 * 60.28793 * 8 7 6 10 10 H 1.08003 * 119.99586 * 204.02555 * 9 8 7 11 11 C 1.40863 * 120.00016 * 24.29737 * 9 8 7 12 12 N 1.30325 * 119.99854 * 8.15683 * 11 9 8 13 13 Si 1.86803 * 119.99956 * 188.15185 * 11 9 8 14 14 H 1.48501 * 109.46780 * 89.99911 * 13 11 9 15 15 H 1.48493 * 109.47402 * 210.00161 * 13 11 9 16 16 H 1.48504 * 109.46978 * 330.00702 * 13 11 9 17 17 C 1.41122 * 120.00018 * 240.28662 * 8 7 6 18 18 C 1.43198 * 120.00020 * 5.44595 * 17 8 7 19 19 N 7.51656 * 137.91795 * 280.90693 * 2 1 3 20 20 C 1.43205 * 119.99927 * 185.43906 * 17 8 7 21 21 N 8.35184 * 113.69525 * 307.30091 * 2 1 3 22 22 N 1.32979 * 118.94219 * 0.27858 * 6 5 4 23 23 C 1.31737 * 120.69290 * 359.43683 * 22 6 5 24 24 N 1.31798 * 121.83148 * 0.58146 * 23 22 6 25 25 H 1.08997 * 109.47036 * 299.99344 * 1 2 3 26 26 H 1.08999 * 109.47524 * 60.00050 * 1 2 3 27 27 H 1.09007 * 109.46586 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47036 * 240.00656 * 2 1 3 29 29 H 1.08999 * 109.47524 * 119.99950 * 2 1 3 30 30 H 1.09006 * 109.46989 * 60.00541 * 3 2 1 31 31 H 1.08997 * 109.47455 * 300.00605 * 3 2 1 32 32 H 1.08004 * 120.83130 * 0.04598 * 5 4 3 33 33 H 0.97002 * 120.00299 * 185.61448 * 7 6 5 34 34 H 0.96998 * 119.99524 * 184.98751 * 12 11 9 35 35 H 1.07997 * 119.08273 * 180.26629 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4427 -0.0006 5 6 4.2457 2.0866 -1.0036 6 6 5.6406 2.0590 -0.9621 7 7 6.3876 2.6910 -1.9457 8 6 5.7549 3.4531 -2.9131 9 6 4.9961 4.5562 -2.5420 10 1 4.2111 4.9148 -3.1915 11 6 5.2543 5.2104 -1.3215 12 7 6.3008 4.8848 -0.6164 13 14 4.0967 6.5446 -0.7137 14 1 3.0337 5.9336 0.1242 15 1 4.8584 7.5305 0.0942 16 1 3.4775 7.2301 -1.8765 17 6 5.8808 3.1093 -4.2760 18 6 6.5643 1.9083 -4.6514 19 7 7.1087 0.9532 -4.9466 20 6 5.3248 3.9616 -5.2837 21 7 4.8864 4.6345 -6.0835 22 7 6.2421 1.4130 0.0325 23 6 5.5360 0.8169 0.9715 24 7 4.2181 0.8247 0.9606 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8901 31 1 1.6765 1.9564 -0.8899 32 1 3.7256 2.5987 -1.7997 33 1 7.3532 2.5991 -1.9557 34 1 6.4399 5.2827 0.2572 35 1 6.0514 0.3034 1.7696 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169079042.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:45 Heat of formation + Delta-G solvation = 87.780802 kcal Electronic energy + Delta-G solvation = -21233.022045 eV Core-core repulsion = 18037.503962 eV Total energy + Delta-G solvation = -3195.518083 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.48563 -37.74145 -35.61357 -35.22646 -34.81915 -33.82993 -32.31195 -31.25368 -29.46962 -27.36617 -27.00240 -23.83143 -22.65897 -21.66464 -20.75975 -19.06635 -17.77908 -17.45759 -16.37609 -16.16743 -15.26359 -14.92767 -14.70356 -14.32294 -14.10142 -13.87300 -13.54591 -12.93493 -12.88876 -12.68648 -12.40923 -12.12661 -11.94370 -11.79553 -11.74325 -11.63305 -11.39946 -11.27328 -11.14902 -11.02212 -10.93857 -10.64753 -10.41607 -10.28241 -10.06198 -9.27565 -8.66828 -8.47117 -7.95389 -7.17293 -5.59486 1.60678 1.72185 2.22542 2.62928 2.69573 2.78436 3.31136 3.57826 3.78481 3.96558 4.10411 4.24222 4.45192 4.55169 4.80283 5.03733 5.12777 5.16143 5.26663 5.41352 5.53869 5.63706 5.75592 5.87597 5.91867 6.07657 6.09550 6.15441 6.16724 6.22977 6.36714 6.42913 6.75869 6.94202 7.16432 7.45113 7.54550 7.71729 8.10051 8.30527 8.82395 8.89035 9.01879 9.09865 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.011328 B = 0.006934 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.100751 B = 4037.242123 C = 4637.632145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.067 4.067 4 C 0.186 3.814 5 C -0.269 4.269 6 C 0.472 3.528 7 N -0.628 5.628 8 C 0.380 3.620 9 C -0.379 4.379 10 H 0.114 0.886 11 C 0.070 3.930 12 N -0.716 5.716 13 Si 0.920 3.080 14 H -0.254 1.254 15 H -0.267 1.267 16 H -0.247 1.247 17 C -0.301 4.301 18 C 0.306 3.694 19 N -0.527 5.527 20 C 0.326 3.674 21 N -0.526 5.526 22 N -0.581 5.581 23 C 0.326 3.674 24 N -0.572 5.572 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.149 0.851 33 H 0.409 0.591 34 H 0.304 0.696 35 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.963 -1.031 9.702 11.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.105 4.105 4 C 0.045 3.955 5 C -0.297 4.297 6 C 0.229 3.771 7 N -0.251 5.251 8 C 0.276 3.724 9 C -0.407 4.407 10 H 0.132 0.868 11 C -0.161 4.161 12 N -0.335 5.335 13 Si 0.741 3.259 14 H -0.178 1.178 15 H -0.191 1.191 16 H -0.169 1.169 17 C -0.319 4.319 18 C -0.002 4.002 19 N -0.208 5.208 20 C 0.017 3.983 21 N -0.207 5.207 22 N -0.306 5.306 23 C 0.036 3.964 24 N -0.292 5.292 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.167 0.833 33 H 0.247 0.753 34 H 0.116 0.884 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -6.220 -1.762 8.777 10.901 hybrid contribution -0.163 1.165 0.239 1.200 sum -6.383 -0.598 9.017 11.064 Atomic orbital electron populations 1.21783 0.95885 1.01462 1.01734 1.21405 0.95227 0.95800 1.02797 1.20551 0.88554 0.98209 1.03204 1.21194 0.96400 0.89237 0.88627 1.22223 0.94015 1.08946 1.04530 1.18174 0.88002 0.85504 0.85408 1.41315 1.09102 1.48963 1.25747 1.16721 0.85341 0.86709 0.83638 1.20311 1.13150 1.04983 1.02221 0.86797 1.26500 0.95231 0.98765 0.95649 1.69469 1.20548 1.33405 1.10040 0.85983 0.80159 0.79237 0.80483 1.17840 1.19090 1.16947 1.12940 1.32346 0.98606 0.88002 1.25284 0.90946 0.91488 0.92471 1.81181 1.17452 1.13817 1.08390 1.24512 0.90833 0.91486 0.91483 1.80967 1.16944 1.12380 1.10446 1.67827 1.41802 1.16218 1.04742 1.24379 0.86673 0.91506 0.93841 1.68075 1.09851 1.23691 1.27605 0.92788 0.92703 0.92877 0.92171 0.90953 0.90131 0.90097 0.83313 0.75293 0.88422 0.79853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.11 -1.34 5.82 -26.73 -0.16 -1.50 16 3 C -0.07 -0.87 5.64 -27.88 -0.16 -1.02 16 4 C 0.19 3.03 6.17 -82.32 -0.51 2.53 16 5 C -0.27 -4.82 8.39 -39.11 -0.33 -5.15 16 6 C 0.47 8.99 6.45 -154.60 -1.00 8.00 16 7 N -0.63 -12.17 3.29 -9.59 -0.03 -12.20 16 8 C 0.38 7.55 4.98 -83.52 -0.42 7.14 16 9 C -0.38 -7.29 6.71 -38.33 -0.26 -7.55 16 10 H 0.11 2.18 7.20 -52.48 -0.38 1.80 16 11 C 0.07 1.28 4.93 -17.20 -0.08 1.20 16 12 N -0.72 -13.51 11.24 55.60 0.62 -12.88 16 13 Si 0.92 14.28 29.58 -169.99 -5.03 9.26 16 14 H -0.25 -3.92 7.11 56.52 0.40 -3.52 16 15 H -0.27 -4.13 7.11 56.52 0.40 -3.73 16 16 H -0.25 -3.89 7.11 56.52 0.40 -3.49 16 17 C -0.30 -6.32 5.88 -104.95 -0.62 -6.94 16 18 C 0.31 6.77 14.83 -22.40 -0.33 6.44 16 19 N -0.53 -12.27 18.55 41.93 0.78 -11.49 16 20 C 0.33 7.13 13.99 -22.55 -0.32 6.82 16 21 N -0.53 -12.00 18.52 41.74 0.77 -11.23 16 22 N -0.58 -10.74 10.47 -13.78 -0.14 -10.88 16 23 C 0.33 5.32 12.28 -92.20 -1.13 4.18 16 24 N -0.57 -9.42 10.11 -10.88 -0.11 -9.53 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.89 8.02 -51.93 -0.42 0.48 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.08 0.97 7.93 -51.93 -0.41 0.55 16 32 H 0.15 2.63 6.23 -52.48 -0.33 2.30 16 33 H 0.41 7.95 8.94 -40.82 -0.37 7.59 16 34 H 0.30 5.33 8.29 -40.82 -0.34 4.99 16 35 H 0.18 2.32 8.06 -52.49 -0.42 1.89 16 LS Contribution 324.44 15.07 4.89 4.89 Total: -1.00 -24.34 324.44 -6.75 -31.09 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -3.57 Total: 9.92 kcal Atomic # 6 Polarization: 18.00 SS G_CDS: -4.93 Total: 13.07 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: 1.89 Total: -68.22 kcal Atomic # 14 Polarization: 14.28 SS G_CDS: -5.03 Total: 9.26 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -24.34 -6.75 -31.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079042.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.869 kcal (2) G-P(sol) polarization free energy of solvation -24.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds