Wall clock time and date at job start Tue Mar 31 2020 05:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48498 * 109.47350 * 269.76388 * 3 2 1 5 5 H 1.48497 * 109.47099 * 29.76624 * 3 2 1 6 6 H 1.48502 * 109.46915 * 149.76574 * 3 2 1 7 7 C 1.39907 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00218 * 342.72370 * 7 2 1 9 9 C 1.41023 * 120.00234 * 162.73534 * 7 2 1 10 10 C 1.40751 * 120.28684 * 331.62496 * 9 7 2 11 11 C 1.36407 * 119.96666 * 179.74495 * 10 9 7 12 12 C 1.39055 * 120.57348 * 0.25448 * 11 10 9 13 13 Cl 1.73600 * 119.70263 * 179.97438 * 12 11 10 14 14 C 1.38323 * 120.59582 * 359.97438 * 12 11 10 15 15 C 1.38682 * 120.01234 * 0.02562 * 14 12 11 16 16 N 1.38752 * 120.28122 * 179.97438 * 15 14 12 17 17 C 1.46497 * 120.00015 * 353.80646 * 16 15 14 18 18 H 1.08998 * 109.47131 * 344.06642 * 17 16 15 19 19 N 1.46899 * 109.47264 * 104.06633 * 17 16 15 20 20 C 1.53001 * 109.46961 * 224.06690 * 17 16 15 21 21 C 1.53003 * 109.46930 * 180.02562 * 20 17 16 22 22 C 1.53001 * 109.46930 * 180.02562 * 21 20 17 23 23 N 1.46893 * 109.46983 * 179.97438 * 22 21 20 24 24 H 0.97007 * 119.99759 * 0.02562 * 1 2 3 25 25 H 1.08007 * 120.01665 * 0.02716 * 10 9 7 26 26 H 1.07994 * 119.71623 * 180.23348 * 11 10 9 27 27 H 1.07996 * 119.99348 * 179.97438 * 14 12 11 28 28 H 0.96995 * 119.99283 * 173.80245 * 16 15 14 29 29 H 1.00896 * 110.99933 * 296.04730 * 19 17 16 30 30 H 1.00906 * 110.99833 * 59.99922 * 19 17 16 31 31 H 1.08998 * 109.47158 * 299.99935 * 20 17 16 32 32 H 1.09000 * 109.47264 * 59.99838 * 20 17 16 33 33 H 1.08998 * 109.46981 * 299.99840 * 21 20 17 34 34 H 1.08999 * 109.47390 * 60.00292 * 21 20 17 35 35 H 1.09000 * 109.46838 * 300.00149 * 22 21 20 36 36 H 1.09000 * 109.47264 * 59.99634 * 22 21 20 37 37 H 1.00896 * 111.00178 * 56.04936 * 23 22 21 38 38 H 1.00910 * 111.00083 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4955 2.0435 -1.4000 5 1 1.4380 2.6540 0.6951 6 1 3.5381 1.4415 0.7050 7 6 2.0084 -1.2117 -0.0005 8 1 1.5050 -2.1260 0.2768 9 6 3.3710 -1.2392 -0.3630 10 6 3.8877 -0.2811 -1.2553 11 6 5.2078 -0.3106 -1.5974 12 6 6.0520 -1.2848 -1.0759 13 17 7.7282 -1.3016 -1.5271 14 6 5.5682 -2.2405 -0.2008 15 6 4.2301 -2.2334 0.1636 16 7 3.7387 -3.1898 1.0406 17 6 4.5985 -4.2917 1.4795 18 1 5.4630 -4.3631 0.8196 19 7 5.0513 -4.0418 2.8545 20 6 3.8112 -5.6028 1.4322 21 6 4.7090 -6.7536 1.8913 22 6 3.9219 -8.0647 1.8434 23 7 4.7840 -9.1697 2.2835 24 1 -0.4850 0.8401 -0.0004 25 1 3.2401 0.4799 -1.6654 26 1 5.6007 0.4288 -2.2794 27 1 6.2323 -2.9929 0.1981 28 1 2.8260 -3.1286 1.3630 29 1 5.6281 -3.2152 2.9006 30 1 4.2675 -3.9715 3.4861 31 1 2.9467 -5.5315 2.0922 32 1 3.4752 -5.7883 0.4120 33 1 5.5738 -6.8251 1.2317 34 1 5.0445 -6.5679 2.9116 35 1 3.0568 -7.9935 2.5027 36 1 3.5866 -8.2502 0.8229 37 1 5.1601 -8.9909 3.2025 38 1 4.2869 -10.0475 2.2604 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170906975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:27 Heat of formation + Delta-G solvation = 1.245242 kcal Electronic energy + Delta-G solvation = -19867.464058 eV Core-core repulsion = 16769.301005 eV Total energy + Delta-G solvation = -3098.163053 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.73697 -37.01437 -35.61888 -35.09492 -33.58905 -32.23890 -30.63364 -30.31861 -28.10935 -25.76365 -24.81835 -22.58389 -21.36751 -20.36196 -20.24662 -17.58225 -17.00848 -16.06887 -15.89106 -15.38776 -15.21662 -14.95242 -14.17585 -14.01443 -13.97240 -13.59924 -13.31467 -12.79873 -12.61060 -12.35552 -12.02195 -11.79631 -11.50668 -11.43841 -11.08907 -10.90949 -10.69729 -10.57147 -10.42036 -10.19911 -10.02878 -9.74458 -9.43062 -9.13432 -8.85808 -8.74311 -7.69762 -7.04953 -6.74693 -4.44779 2.37303 2.62286 3.04680 3.15428 3.24632 3.25308 3.89686 4.15991 4.35942 4.54349 4.81009 5.00573 5.06445 5.26531 5.35057 5.44231 5.60444 5.78115 5.84411 6.00222 6.01344 6.11454 6.35988 6.43871 6.45207 6.61008 6.78351 6.96330 7.01400 7.05563 7.25162 7.26057 7.40624 7.55204 7.61167 7.75849 8.02040 8.22607 8.54739 8.60903 8.73855 9.97049 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.013190 B = 0.005465 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.271319 B = 5122.734583 C = 6825.953025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.084 3.916 3 Si 0.916 3.084 4 H -0.268 1.268 5 H -0.294 1.294 6 H -0.247 1.247 7 C -0.441 4.441 8 H 0.089 0.911 9 C 0.057 3.943 10 C -0.218 4.218 11 C -0.102 4.102 12 C -0.107 4.107 13 Cl -0.126 7.126 14 C -0.160 4.160 15 C 0.135 3.865 16 N -0.762 5.762 17 C 0.310 3.690 18 H 0.094 0.906 19 N -0.846 5.846 20 C -0.117 4.117 21 C -0.106 4.106 22 C 0.058 3.942 23 N -0.853 5.853 24 H 0.286 0.714 25 H 0.110 0.890 26 H 0.100 0.900 27 H 0.107 0.893 28 H 0.395 0.605 29 H 0.342 0.658 30 H 0.335 0.665 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.023 0.977 36 H 0.068 0.932 37 H 0.340 0.660 38 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.305 -7.915 4.465 10.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.135 4.135 3 Si 0.743 3.257 4 H -0.195 1.195 5 H -0.221 1.221 6 H -0.170 1.170 7 C -0.470 4.470 8 H 0.107 0.893 9 C 0.051 3.949 10 C -0.239 4.239 11 C -0.122 4.122 12 C -0.135 4.135 13 Cl -0.098 7.098 14 C -0.184 4.184 15 C 0.035 3.965 16 N -0.400 5.400 17 C 0.114 3.886 18 H 0.112 0.888 19 N -0.378 5.378 20 C -0.157 4.157 21 C -0.144 4.144 22 C -0.072 4.072 23 N -0.382 5.382 24 H 0.096 0.904 25 H 0.128 0.872 26 H 0.118 0.882 27 H 0.125 0.875 28 H 0.231 0.769 29 H 0.155 0.845 30 H 0.147 0.853 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.042 0.958 36 H 0.087 0.913 37 H 0.152 0.848 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.123 -8.480 3.777 11.120 hybrid contribution -1.290 1.600 0.659 2.159 sum 4.833 -6.879 4.436 9.506 Atomic orbital electron populations 1.69707 1.08022 1.30362 1.35122 1.26123 0.94733 1.01687 0.90998 0.86292 0.80597 0.79609 0.79189 1.19466 1.22143 1.17029 1.19153 0.92614 0.95753 1.39489 0.89341 1.17479 0.93000 0.92069 0.92335 1.20533 0.94937 1.04214 1.04216 1.20053 0.93415 0.97858 1.00881 1.19862 0.82668 1.02986 1.07998 1.98236 1.20266 1.98651 1.92651 1.19937 0.93865 1.00993 1.03638 1.17614 0.91017 0.93598 0.94317 1.45163 1.15957 1.26892 1.51971 1.21317 0.92779 0.86004 0.88451 0.88781 1.59584 1.25054 1.45164 1.07984 1.21752 0.98307 0.93789 1.01860 1.21410 0.98305 0.91826 1.02886 1.21865 0.93844 0.91425 1.00094 1.58711 1.41049 1.04954 1.33483 0.90373 0.87203 0.88181 0.87548 0.76871 0.84476 0.85306 0.92198 0.91188 0.91462 0.90801 0.95846 0.91308 0.84823 0.85039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.49 13.93 55.55 0.77 -19.71 16 2 C 0.08 2.07 5.42 -17.32 -0.09 1.97 16 3 Si 0.92 20.17 24.50 -169.99 -4.16 16.00 16 4 H -0.27 -5.78 6.42 56.52 0.36 -5.42 16 5 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.25 -5.61 7.01 56.52 0.40 -5.21 16 7 C -0.44 -10.95 8.94 -37.90 -0.34 -11.29 16 8 H 0.09 2.26 7.04 -52.49 -0.37 1.89 16 9 C 0.06 1.33 5.17 -106.63 -0.55 0.78 16 10 C -0.22 -5.07 7.20 -39.29 -0.28 -5.35 16 11 C -0.10 -2.20 9.74 -39.94 -0.39 -2.59 16 12 C -0.11 -2.23 6.33 -39.25 -0.25 -2.48 16 13 Cl -0.13 -2.29 28.94 -51.86 -1.50 -3.79 16 14 C -0.16 -3.24 8.96 -39.39 -0.35 -3.59 16 15 C 0.14 2.85 6.67 -83.30 -0.56 2.29 16 16 N -0.76 -13.50 5.24 -54.61 -0.29 -13.79 16 17 C 0.31 4.50 3.30 -127.21 -0.42 4.08 16 18 H 0.09 1.49 5.74 -51.93 -0.30 1.19 16 19 N -0.85 -10.87 8.68 -7.34 -0.06 -10.94 16 20 C -0.12 -1.49 5.20 -26.73 -0.14 -1.63 16 21 C -0.11 -1.20 5.32 -26.73 -0.14 -1.35 16 22 C 0.06 0.60 6.79 -3.83 -0.03 0.57 16 23 N -0.85 -7.94 9.62 -10.37 -0.10 -8.04 16 24 H 0.29 6.63 8.30 -40.82 -0.34 6.30 16 25 H 0.11 2.56 4.29 -52.48 -0.22 2.33 16 26 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 27 H 0.11 1.98 6.02 -52.49 -0.32 1.66 16 28 H 0.40 7.24 7.13 -40.82 -0.29 6.94 16 29 H 0.34 4.63 9.08 -39.29 -0.36 4.28 16 30 H 0.33 4.05 9.04 -39.29 -0.36 3.69 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.85 7.60 -51.93 -0.39 0.46 16 35 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.34 2.79 8.99 -39.29 -0.35 2.44 16 38 H 0.34 2.54 9.08 -39.29 -0.36 2.18 16 LS Contribution 321.55 15.07 4.85 4.85 Total: -1.00 -25.16 321.55 -9.07 -34.23 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: -5.03 Total: 19.77 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -3.54 Total: -18.57 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: 0.32 Total: -52.49 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.16 Total: 16.00 kcal Atomic # 17 Polarization: -2.29 SS G_CDS: -1.50 Total: -3.79 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -25.16 -9.07 -34.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170906975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.475 kcal (2) G-P(sol) polarization free energy of solvation -25.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds