Wall clock time and date at job start Tue Mar 31 2020 05:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86797 * 120.00220 * 2 1 4 4 H 1.48506 * 109.47015 * 239.99798 * 3 2 1 5 5 H 1.48503 * 109.47186 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47375 * 119.99888 * 3 2 1 7 7 C 1.39907 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00411 * 195.51791 * 7 2 1 9 9 C 1.41021 * 120.00030 * 15.51225 * 7 2 1 10 10 C 1.40750 * 120.29106 * 26.27560 * 9 7 2 11 11 C 1.36410 * 119.96382 * 180.25264 * 10 9 7 12 12 C 1.39055 * 120.57665 * 359.77247 * 11 10 9 13 13 Cl 1.73601 * 119.70298 * 180.02562 * 12 11 10 14 14 C 1.38323 * 120.59473 * 359.97438 * 12 11 10 15 15 C 1.38673 * 120.01505 * 359.97438 * 14 12 11 16 16 N 1.38746 * 120.28794 * 179.97438 * 15 14 12 17 17 C 1.46505 * 119.99395 * 7.28405 * 16 15 14 18 18 H 1.08992 * 109.47520 * 16.46496 * 17 16 15 19 19 N 1.46902 * 109.46627 * 256.45941 * 17 16 15 20 20 C 1.53001 * 109.46999 * 136.46489 * 17 16 15 21 21 C 1.52998 * 109.47267 * 184.99655 * 20 17 16 22 22 C 1.53001 * 109.47267 * 179.97438 * 21 20 17 23 23 N 1.46899 * 109.46930 * 180.02562 * 22 21 20 24 24 H 0.96998 * 119.99904 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.01802 * 0.02574 * 10 9 7 26 26 H 1.07993 * 119.71125 * 179.74187 * 11 10 9 27 27 H 1.07999 * 119.99092 * 179.97438 * 14 12 11 28 28 H 0.96998 * 120.00480 * 187.55733 * 16 15 14 29 29 H 1.00891 * 111.00396 * 299.99667 * 19 17 16 30 30 H 1.00902 * 111.00133 * 63.96225 * 19 17 16 31 31 H 1.09004 * 109.47392 * 304.99945 * 20 17 16 32 32 H 1.09002 * 109.47182 * 64.99294 * 20 17 16 33 33 H 1.09001 * 109.46847 * 300.00016 * 21 20 17 34 34 H 1.09005 * 109.46837 * 59.99628 * 21 20 17 35 35 H 1.09005 * 109.46738 * 299.99920 * 22 21 20 36 36 H 1.08994 * 109.47078 * 59.99966 * 22 21 20 37 37 H 1.00902 * 111.00387 * 56.04520 * 23 22 21 38 38 H 1.00903 * 110.99765 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0968 1.6963 -1.2125 5 1 1.2781 2.7465 -0.0006 6 1 3.0968 1.6964 1.2125 7 6 2.0085 -1.2116 0.0005 8 1 3.0590 -1.2287 0.2508 9 6 1.3419 -2.4108 -0.3255 10 6 0.2043 -2.3880 -1.1541 11 6 -0.4384 -3.5514 -1.4611 12 6 0.0228 -4.7662 -0.9659 13 17 -0.8122 -6.2332 -1.3715 14 6 1.1415 -4.8164 -0.1539 15 6 1.8144 -3.6488 0.1729 16 7 2.9367 -3.6925 0.9874 17 6 3.5101 -4.9836 1.3756 18 1 3.1256 -5.7641 0.7191 19 7 3.1400 -5.2858 2.7648 20 6 5.0341 -4.9215 1.2559 21 6 5.6249 -6.3039 1.5405 22 6 7.1489 -6.2419 1.4202 23 7 7.7159 -7.5693 1.6928 24 1 -0.4850 0.8400 -0.0004 25 1 -0.1616 -1.4496 -1.5437 26 1 -1.3132 -3.5287 -2.0938 27 1 1.4909 -5.7652 0.2257 28 1 3.3394 -2.8684 1.3030 29 1 3.4853 -4.5764 3.3935 30 1 2.1412 -5.3959 2.8571 31 1 5.3071 -4.6103 0.2475 32 1 5.4262 -4.2035 1.9762 33 1 5.3520 -6.6149 2.5489 34 1 5.2327 -7.0218 0.8202 35 1 7.4213 -5.9310 0.4115 36 1 7.5413 -5.5239 2.1402 37 1 7.3188 -8.2652 1.0795 38 1 8.7221 -7.5547 1.6191 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170906984.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:31 Heat of formation + Delta-G solvation = -1.611189 kcal Electronic energy + Delta-G solvation = -19798.490184 eV Core-core repulsion = 16700.203267 eV Total energy + Delta-G solvation = -3098.286917 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.51529 -36.87737 -35.49003 -35.02889 -33.55096 -32.08798 -30.56617 -29.54159 -27.91007 -25.70428 -24.93534 -22.26409 -21.33003 -20.40971 -19.94666 -17.47075 -16.64817 -16.13701 -15.57839 -15.35138 -14.97037 -14.74999 -14.68778 -14.19879 -13.46393 -13.21106 -13.02269 -12.66167 -12.47659 -12.28970 -11.75209 -11.53219 -11.38236 -11.34664 -11.17625 -10.83523 -10.79852 -10.64200 -10.44408 -10.13257 -9.77787 -9.72832 -9.27329 -9.14497 -8.85716 -8.60419 -7.44766 -6.88886 -6.49773 -4.31250 2.60564 2.97389 3.01031 3.01744 3.08991 3.41838 3.85549 4.23628 4.50932 4.60719 4.85301 5.03205 5.11790 5.37469 5.45144 5.53987 5.66345 5.78721 5.93425 6.05276 6.17737 6.34343 6.40027 6.50008 6.73286 6.89231 6.97095 7.06436 7.21384 7.25020 7.30601 7.38063 7.60566 7.69719 7.85194 7.97410 8.23343 8.53826 8.67585 8.81317 8.92214 10.12788 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.010725 B = 0.005757 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.013662 B = 4862.875702 C = 7068.074735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.459 4.459 8 H 0.074 0.926 9 C 0.074 3.926 10 C -0.135 4.135 11 C -0.125 4.125 12 C -0.105 4.105 13 Cl -0.134 7.134 14 C -0.165 4.165 15 C 0.118 3.882 16 N -0.765 5.765 17 C 0.312 3.688 18 H 0.092 0.908 19 N -0.847 5.847 20 C -0.117 4.117 21 C -0.107 4.107 22 C 0.059 3.941 23 N -0.853 5.853 24 H 0.281 0.719 25 H 0.126 0.874 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.392 0.608 29 H 0.334 0.666 30 H 0.342 0.658 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.023 0.977 36 H 0.069 0.931 37 H 0.340 0.660 38 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.256 -5.941 1.599 10.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.489 4.489 8 H 0.092 0.908 9 C 0.069 3.931 10 C -0.156 4.156 11 C -0.146 4.146 12 C -0.133 4.133 13 Cl -0.106 7.106 14 C -0.188 4.188 15 C 0.018 3.982 16 N -0.403 5.403 17 C 0.116 3.884 18 H 0.110 0.890 19 N -0.379 5.379 20 C -0.156 4.156 21 C -0.146 4.146 22 C -0.071 4.071 23 N -0.382 5.382 24 H 0.092 0.908 25 H 0.143 0.857 26 H 0.113 0.887 27 H 0.118 0.882 28 H 0.227 0.773 29 H 0.146 0.854 30 H 0.155 0.845 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.041 0.959 36 H 0.087 0.913 37 H 0.152 0.848 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.126 -6.665 2.219 10.742 hybrid contribution 0.170 1.964 -0.941 2.184 sum 8.296 -4.702 1.279 9.621 Atomic orbital electron populations 1.69813 1.07399 1.29276 1.35555 1.25815 0.94738 1.01063 0.92556 0.86382 0.80086 0.80513 0.79815 1.18944 1.20343 1.19194 1.19157 0.96761 0.90912 1.42040 0.90835 1.17348 0.93522 0.90572 0.91695 1.20769 0.98372 0.96398 1.00105 1.20197 1.00463 0.91367 1.02522 1.19943 0.98969 0.84670 1.09685 1.98223 1.79317 1.39337 1.93725 1.19862 0.97770 0.96085 1.05124 1.17710 0.90791 0.93418 0.96265 1.45055 1.31384 1.07057 1.56805 1.21268 0.91960 0.86540 0.88655 0.89024 1.59571 1.19620 1.51744 1.06932 1.21749 0.94711 0.97358 1.01819 1.21433 0.92955 0.96627 1.03555 1.21858 0.95978 0.90697 0.98614 1.58726 1.10270 1.07217 1.61942 0.90792 0.85671 0.88688 0.88153 0.77311 0.85366 0.84475 0.91466 0.92082 0.89811 0.92541 0.95908 0.91283 0.84837 0.85072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.59 10.94 55.55 0.61 -18.98 16 2 C 0.08 1.79 5.17 -17.33 -0.09 1.70 16 3 Si 0.91 17.79 29.59 -169.99 -5.03 12.77 16 4 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.46 -11.09 8.44 -37.90 -0.32 -11.41 16 8 H 0.07 1.69 6.81 -52.49 -0.36 1.33 16 9 C 0.07 1.80 5.58 -106.62 -0.59 1.21 16 10 C -0.14 -3.35 8.62 -39.29 -0.34 -3.69 16 11 C -0.13 -2.89 9.74 -39.94 -0.39 -3.28 16 12 C -0.10 -2.31 6.33 -39.25 -0.25 -2.56 16 13 Cl -0.13 -2.59 28.94 -51.86 -1.50 -4.09 16 14 C -0.16 -3.53 8.94 -39.39 -0.35 -3.88 16 15 C 0.12 2.60 6.67 -83.30 -0.56 2.04 16 16 N -0.76 -13.96 5.24 -54.61 -0.29 -14.24 16 17 C 0.31 4.71 3.21 -127.20 -0.41 4.30 16 18 H 0.09 1.52 5.81 -51.93 -0.30 1.22 16 19 N -0.85 -11.67 8.90 -7.34 -0.07 -11.73 16 20 C -0.12 -1.50 5.16 -26.73 -0.14 -1.64 16 21 C -0.11 -1.25 5.36 -26.73 -0.14 -1.39 16 22 C 0.06 0.61 6.79 -3.82 -0.03 0.59 16 23 N -0.85 -8.02 9.62 -10.37 -0.10 -8.12 16 24 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 25 H 0.13 3.21 6.20 -52.49 -0.33 2.88 16 26 H 0.09 2.04 8.06 -52.49 -0.42 1.62 16 27 H 0.10 1.99 6.07 -52.49 -0.32 1.68 16 28 H 0.39 7.22 7.11 -40.82 -0.29 6.92 16 29 H 0.33 4.33 9.04 -39.30 -0.36 3.98 16 30 H 0.34 5.03 9.08 -39.29 -0.36 4.67 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.08 7.75 -51.93 -0.40 0.68 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.34 2.87 8.99 -39.29 -0.35 2.52 16 38 H 0.34 2.55 9.08 -39.29 -0.36 2.19 16 LS Contribution 327.56 15.07 4.94 4.94 Total: -1.00 -25.03 327.56 -10.13 -35.16 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: -5.09 Total: 22.34 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -3.60 Total: -18.03 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 0.16 Total: -53.08 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.77 kcal Atomic # 17 Polarization: -2.59 SS G_CDS: -1.50 Total: -4.09 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -25.03 -10.13 -35.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170906984.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.548 kcal (2) G-P(sol) polarization free energy of solvation -25.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds