Wall clock time and date at job start Tue Mar 31 2020 06:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37096 * 120.00132 * 2 1 4 4 H 1.08003 * 120.00247 * 182.97040 * 3 2 1 5 5 C 1.38954 * 119.99577 * 2.96887 * 3 2 1 6 6 N 1.31404 * 120.00137 * 5.18871 * 5 3 2 7 7 Si 1.86801 * 119.99524 * 185.18920 * 5 3 2 8 8 H 1.48503 * 109.47266 * 60.00080 * 7 5 3 9 9 H 1.48505 * 109.47162 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47430 * 299.99839 * 7 5 3 11 11 C 1.34782 * 120.00112 * 179.97438 * 2 1 3 12 12 O 1.21284 * 119.99895 * 185.96352 * 11 2 1 13 13 C 1.50696 * 119.99790 * 5.96162 * 11 2 1 14 14 C 1.53003 * 109.47055 * 177.12588 * 13 11 2 15 15 C 1.52999 * 109.47356 * 57.12717 * 13 11 2 16 16 C 1.50698 * 109.47245 * 297.12494 * 13 11 2 17 17 C 1.38413 * 120.02799 * 349.54461 * 16 13 11 18 18 F 1.35101 * 120.01295 * 0.02562 * 17 16 13 19 19 C 1.38479 * 119.97990 * 179.78728 * 17 16 13 20 20 C 1.38210 * 120.02045 * 0.48852 * 19 17 16 21 21 C 1.38214 * 120.04964 * 359.74699 * 20 19 17 22 22 C 1.38424 * 120.02461 * 169.82087 * 16 13 11 23 23 F 1.35099 * 120.01480 * 359.97438 * 22 16 13 24 24 H 1.09001 * 109.47168 * 183.47658 * 1 2 3 25 25 H 1.08990 * 109.47382 * 303.48642 * 1 2 3 26 26 H 1.09003 * 109.46789 * 63.48550 * 1 2 3 27 27 H 0.97007 * 119.99926 * 180.02562 * 6 5 3 28 28 H 1.08994 * 109.46962 * 295.34064 * 14 13 11 29 29 H 1.09004 * 109.47058 * 175.34100 * 14 13 11 30 30 H 1.09000 * 109.46739 * 55.34005 * 14 13 11 31 31 H 1.08996 * 109.47484 * 185.76491 * 15 13 11 32 32 H 1.09004 * 109.47123 * 305.76156 * 15 13 11 33 33 H 1.08995 * 109.47252 * 65.76317 * 15 13 11 34 34 H 1.07988 * 119.98940 * 180.22946 * 19 17 16 35 35 H 1.07997 * 119.97241 * 179.75912 * 20 19 17 36 36 H 1.08002 * 119.98101 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2294 1.1879 -0.0485 5 6 1.4571 2.3898 0.0623 6 7 0.1530 2.3887 0.2239 7 14 2.3788 4.0080 -0.0836 8 1 3.0768 4.0638 -1.3932 9 1 1.4175 5.1358 0.0127 10 1 3.3749 4.1110 1.0129 11 6 2.1389 -1.1672 0.0005 12 8 3.3468 -1.1700 0.1097 13 6 1.3915 -2.4688 -0.1344 14 6 2.3894 -3.6279 -0.1769 15 6 0.5713 -2.4545 -1.4259 16 6 0.4692 -2.6431 1.0445 17 6 0.5684 -1.7939 2.1330 18 9 1.4919 -0.8078 2.1389 19 6 -0.2826 -1.9521 3.2139 20 6 -1.2241 -2.9639 3.2104 21 6 -1.3208 -3.8156 2.1261 22 6 -0.4741 -3.6561 1.0421 23 9 -0.5688 -4.4889 -0.0174 24 1 -0.3633 -1.0258 0.0623 25 1 -0.3633 0.5669 0.8570 26 1 -0.3633 0.4588 -0.9196 27 1 -0.3311 3.2282 0.2671 28 1 3.0023 -3.5468 -1.0746 29 1 1.8475 -4.5736 -0.1911 30 1 3.0292 -3.5889 0.7047 31 1 -0.0474 -3.3505 -1.4734 32 1 -0.0670 -1.5710 -1.4412 33 1 1.2440 -2.4316 -2.2833 34 1 -0.2078 -1.2873 4.0616 35 1 -1.8848 -3.0891 4.0555 36 1 -2.0567 -4.6061 2.1248 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181190098.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:06 Heat of formation + Delta-G solvation = -66.132535 kcal Electronic energy + Delta-G solvation = -24205.724517 eV Core-core repulsion = 20520.550313 eV Total energy + Delta-G solvation = -3685.174204 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.07857 -49.96987 -41.28134 -39.44946 -36.84439 -36.18219 -33.42459 -31.20854 -30.89877 -28.90176 -27.68925 -26.79525 -24.69024 -23.83013 -22.76647 -20.24214 -19.10665 -18.86815 -18.22512 -17.94798 -17.04604 -16.97631 -16.50190 -16.39173 -16.14210 -15.97821 -15.79097 -15.29011 -14.88287 -14.55471 -14.18194 -13.84810 -13.69689 -13.45168 -13.16091 -12.96851 -12.92848 -12.85254 -12.75544 -12.68669 -12.47060 -12.26705 -12.12206 -11.91771 -11.79365 -11.03944 -10.26725 -9.83840 -9.75723 -9.61058 -8.17214 -5.85514 0.01742 0.04803 1.35878 1.36840 1.47906 2.00736 2.25050 2.43534 2.95644 3.00734 3.10361 3.46388 3.52958 3.63879 3.91462 4.00141 4.10208 4.13878 4.28071 4.57387 4.64613 4.72257 4.77420 4.80640 4.91968 4.96677 5.05351 5.10986 5.13779 5.19456 5.24273 5.25323 5.43568 5.54264 5.85547 6.05614 6.51128 7.18568 7.52676 8.04938 8.70013 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.022918 B = 0.007233 C = 0.006469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.467997 B = 3870.004296 C = 4327.283448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.451 5.451 3 C -0.331 4.331 4 H 0.071 0.929 5 C -0.006 4.006 6 N -0.898 5.898 7 Si 0.990 3.010 8 H -0.273 1.273 9 H -0.266 1.266 10 H -0.277 1.277 11 C 0.450 3.550 12 O -0.638 6.638 13 C -0.032 4.032 14 C -0.109 4.109 15 C -0.158 4.158 16 C -0.157 4.157 17 C 0.097 3.903 18 F -0.135 7.135 19 C -0.166 4.166 20 C -0.048 4.048 21 C -0.149 4.149 22 C 0.125 3.875 23 F -0.124 7.124 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.033 0.967 27 H 0.269 0.731 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.041 0.959 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.150 0.850 35 H 0.189 0.811 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.613 -12.232 4.559 16.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.168 5.168 3 C -0.459 4.459 4 H 0.089 0.911 5 C -0.206 4.206 6 N -0.539 5.539 7 Si 0.814 3.186 8 H -0.199 1.199 9 H -0.190 1.190 10 H -0.202 1.202 11 C 0.240 3.760 12 O -0.527 6.527 13 C -0.036 4.036 14 C -0.166 4.166 15 C -0.215 4.215 16 C -0.159 4.159 17 C 0.077 3.923 18 F -0.113 7.113 19 C -0.185 4.185 20 C -0.066 4.066 21 C -0.167 4.167 22 C 0.106 3.894 23 F -0.103 7.103 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.052 0.948 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.167 0.833 35 H 0.206 0.794 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -9.185 -12.031 4.575 15.813 hybrid contribution 1.111 1.435 -0.447 1.869 sum -8.074 -10.596 4.128 13.947 Atomic orbital electron populations 1.22021 0.79560 0.98181 1.02393 1.43690 1.06423 1.04385 1.62315 1.19642 0.92277 0.84042 1.49916 0.91106 1.25987 0.96773 1.01919 0.95950 1.70220 1.06944 1.27739 1.48962 0.85055 0.77844 0.77038 0.78697 1.19851 1.19018 1.20234 1.20319 0.87586 0.85625 0.82488 1.90431 1.16448 1.87643 1.58172 1.19531 0.95181 0.94082 0.94775 1.21522 0.97364 0.95758 1.02003 1.22372 1.00227 1.04758 0.94147 1.19749 1.00976 0.98840 0.96372 1.17986 0.90558 0.87426 0.96284 1.91664 1.64061 1.59562 1.95999 1.21516 0.96971 1.02176 0.97826 1.21315 0.95628 0.90852 0.98764 1.21579 1.00292 1.02981 0.91889 1.17196 0.96756 0.89198 0.86272 1.91408 1.95293 1.69196 1.54361 0.91998 0.91142 0.94842 0.92020 0.92332 0.89518 0.93979 0.87895 0.91791 0.92221 0.83251 0.79390 0.80062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.90 5.30 127.77 0.68 6.58 16 2 N -0.45 -24.93 1.72 -658.90 -1.14 -26.06 16 3 C -0.33 -19.96 9.49 84.04 0.80 -19.16 16 4 H 0.07 4.59 7.19 -2.91 -0.02 4.57 16 5 C -0.01 -0.35 5.44 84.93 0.46 0.11 16 6 N -0.90 -48.70 9.49 21.66 0.21 -48.49 16 7 Si 0.99 44.63 29.56 68.60 2.03 46.66 16 8 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 9 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 11 C 0.45 23.93 4.07 87.65 0.36 24.29 16 12 O -0.64 -39.06 15.50 -3.04 -0.05 -39.11 16 13 C -0.03 -1.30 0.50 -53.68 -0.03 -1.33 16 14 C -0.11 -3.99 7.76 71.98 0.56 -3.43 16 15 C -0.16 -5.59 7.91 71.98 0.57 -5.02 16 16 C -0.16 -5.55 2.93 -19.78 -0.06 -5.61 16 17 C 0.10 3.70 5.59 22.37 0.12 3.82 16 18 F -0.13 -6.77 12.20 44.97 0.55 -6.22 16 19 C -0.17 -4.56 10.03 22.32 0.22 -4.33 16 20 C -0.05 -0.87 10.04 22.26 0.22 -0.64 16 21 C -0.15 -2.77 10.02 22.32 0.22 -2.54 16 22 C 0.13 3.32 6.77 22.37 0.15 3.48 16 23 F -0.12 -3.10 13.42 44.97 0.60 -2.50 16 24 H 0.06 2.61 3.11 -2.39 -0.01 2.60 16 25 H 0.07 3.69 6.42 -2.39 -0.02 3.68 16 26 H 0.03 1.69 7.50 -2.39 -0.02 1.67 16 27 H 0.27 13.69 8.31 -92.70 -0.77 12.92 16 28 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.09 2.53 7.07 -2.38 -0.02 2.51 16 30 H 0.04 1.67 7.92 -2.39 -0.02 1.65 16 31 H 0.10 2.97 5.38 -2.39 -0.01 2.96 16 32 H 0.06 2.41 4.84 -2.39 -0.01 2.40 16 33 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.15 3.68 8.06 -2.92 -0.02 3.66 16 35 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16 36 H 0.18 1.90 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -74.55 287.25 7.61 -66.94 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 1.12 Total: 12.58 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 4.28 Total: -3.80 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -0.93 Total: -74.55 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -0.05 Total: -39.11 kcal Atomic # 9 Polarization: -9.87 SS G_CDS: 1.15 Total: -8.72 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -74.55 7.61 -66.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181190098.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.807 kcal (2) G-P(sol) polarization free energy of solvation -74.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds