Wall clock time and date at job start Tue Mar 31 2020 05:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30789 * 1 3 3 Si 1.86802 * 119.99700 * 2 1 4 4 H 1.48500 * 109.47099 * 275.27273 * 3 2 1 5 5 H 1.48498 * 109.47045 * 35.26978 * 3 2 1 6 6 H 1.48495 * 109.47230 * 155.27053 * 3 2 1 7 7 C 1.40073 * 120.00578 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99602 * 340.87918 * 7 2 1 9 9 C 1.40797 * 120.00595 * 160.87231 * 7 2 1 10 10 C 1.41041 * 120.34118 * 316.34805 * 9 7 2 11 11 F 1.35101 * 120.10229 * 359.73555 * 10 9 7 12 12 C 1.37746 * 119.79482 * 179.72135 * 10 9 7 13 13 C 1.38803 * 120.51769 * 0.02562 * 12 10 9 14 14 C 1.38149 * 120.71798 * 359.96081 * 13 12 10 15 15 C 1.39052 * 120.17512 * 0.03810 * 14 13 12 16 16 C 1.47899 * 120.25685 * 180.02562 * 15 14 13 17 17 C 1.39639 * 120.56640 * 129.97807 * 16 15 14 18 18 N 1.31658 * 120.55952 * 180.02562 * 17 16 15 19 19 C 1.31969 * 121.87713 * 359.97438 * 18 17 16 20 20 C 1.38332 * 121.09129 * 359.97438 * 19 18 17 21 21 C 1.50702 * 120.34578 * 180.02562 * 20 19 18 22 22 C 1.53007 * 117.49427 * 8.62100 * 21 20 19 23 23 C 1.52995 * 59.99797 * 252.51197 * 22 21 20 24 24 C 1.38378 * 119.31133 * 359.78607 * 20 19 18 25 25 H 0.96996 * 120.00677 * 359.97438 * 1 2 3 26 26 H 1.07994 * 119.73932 * 179.97438 * 12 10 9 27 27 H 1.08004 * 119.63675 * 179.97438 * 13 12 10 28 28 H 1.07996 * 119.91573 * 180.02562 * 14 13 12 29 29 H 1.08001 * 119.72406 * 0.02562 * 17 16 15 30 30 H 1.07998 * 119.44999 * 180.02562 * 19 18 17 31 31 H 1.08997 * 115.55274 * 154.32798 * 21 20 19 32 32 H 1.08996 * 117.49695 * 0.02562 * 22 21 20 33 33 H 1.09000 * 117.49512 * 145.02023 * 22 21 20 34 34 H 1.09004 * 117.50124 * 252.51162 * 23 22 21 35 35 H 1.09004 * 117.49994 * 107.49528 * 23 22 21 36 36 H 1.08008 * 120.85123 * 180.23279 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 2.3779 2.1108 -1.3941 5 1 1.4993 2.6180 0.8084 6 1 3.5906 1.4108 0.5857 7 6 2.0084 -1.2130 -0.0005 8 1 1.5131 -2.1226 0.3054 9 6 3.3581 -1.2465 -0.4001 10 6 3.7816 -0.5321 -1.5401 11 9 2.8912 0.1855 -2.2595 12 6 5.1058 -0.5681 -1.9175 13 6 6.0278 -1.3028 -1.1848 14 6 5.6364 -2.0101 -0.0646 15 6 4.3070 -1.9942 0.3428 16 6 3.8860 -2.7504 1.5422 17 6 3.1268 -2.1348 2.5395 18 7 2.7526 -2.8079 3.6073 19 6 3.0736 -4.0763 3.7796 20 6 3.8226 -4.7579 2.8373 21 6 4.1792 -6.2065 3.0508 22 6 3.5193 -6.9305 4.2263 23 6 5.0012 -6.5559 4.2930 24 6 4.2369 -4.0973 1.6942 25 1 -0.4851 0.8400 0.0004 26 1 5.4290 -0.0212 -2.7908 27 1 7.0626 -1.3214 -1.4938 28 1 6.3647 -2.5770 0.4962 29 1 2.8441 -1.0978 2.4340 30 1 2.7454 -4.5908 4.6706 31 1 4.3660 -6.7832 2.1450 32 1 2.8272 -6.3592 4.8447 33 1 3.2719 -7.9837 4.0937 34 1 5.7288 -7.3628 4.2044 35 1 5.2843 -5.7381 4.9557 36 1 4.8195 -4.6064 0.9406 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204598065.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:51 Heat of formation + Delta-G solvation = 31.623174 kcal Electronic energy + Delta-G solvation = -21343.823580 eV Core-core repulsion = 18093.657607 eV Total energy + Delta-G solvation = -3250.165973 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.107 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.74492 -39.91646 -37.80113 -36.75411 -33.74675 -32.49512 -31.16483 -30.13454 -28.38075 -25.52040 -23.91540 -23.32052 -22.32371 -21.33016 -21.02762 -19.54015 -17.89938 -16.84323 -16.12758 -16.01839 -15.69133 -15.18445 -14.83615 -14.46265 -14.31654 -14.10224 -13.52381 -13.28165 -12.98391 -12.52045 -12.35522 -12.05682 -11.89595 -11.72188 -11.59071 -11.39623 -11.16392 -10.91241 -10.79501 -10.51705 -10.27006 -10.24202 -9.78287 -9.30776 -9.10216 -8.84336 -8.36249 -7.65921 -7.54138 -7.00318 -4.61780 1.47520 1.77138 2.33028 2.41292 3.15017 3.16969 3.23736 3.81206 3.95546 4.28722 4.46487 4.57856 4.85204 4.96319 5.00811 5.05786 5.26105 5.36951 5.47678 5.57031 5.64281 5.65768 5.74323 5.79108 5.93452 6.04077 6.08385 6.16598 6.29127 6.37537 6.54982 6.67443 6.83082 6.99380 7.07544 7.23525 7.27956 7.44309 7.51794 7.83914 8.19106 8.40125 8.59274 8.60836 9.99889 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.020884 B = 0.005751 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.436475 B = 4867.317192 C = 5744.579838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.093 3.907 3 Si 0.900 3.100 4 H -0.257 1.257 5 H -0.288 1.288 6 H -0.250 1.250 7 C -0.452 4.452 8 H 0.098 0.902 9 C 0.083 3.917 10 C -0.015 4.015 11 F -0.145 7.145 12 C -0.112 4.112 13 C -0.211 4.211 14 C -0.073 4.073 15 C -0.139 4.139 16 C -0.034 4.034 17 C 0.126 3.874 18 N -0.485 5.485 19 C 0.072 3.928 20 C -0.113 4.113 21 C -0.105 4.105 22 C -0.178 4.178 23 C -0.172 4.172 24 C -0.080 4.080 25 H 0.287 0.713 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.160 0.840 30 H 0.143 0.857 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.087 -7.199 4.527 11.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.128 4.128 3 Si 0.724 3.276 4 H -0.182 1.182 5 H -0.215 1.215 6 H -0.173 1.173 7 C -0.480 4.480 8 H 0.116 0.884 9 C 0.079 3.921 10 C -0.035 4.035 11 F -0.124 7.124 12 C -0.131 4.131 13 C -0.231 4.231 14 C -0.091 4.091 15 C -0.141 4.141 16 C -0.036 4.036 17 C -0.032 4.032 18 N -0.192 5.192 19 C -0.084 4.084 20 C -0.115 4.115 21 C -0.124 4.124 22 C -0.215 4.215 23 C -0.209 4.209 24 C -0.105 4.105 25 H 0.098 0.902 26 H 0.126 0.874 27 H 0.125 0.875 28 H 0.121 0.879 29 H 0.177 0.823 30 H 0.160 0.840 31 H 0.129 0.871 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.248 -6.655 5.167 11.114 hybrid contribution 0.506 0.390 -0.979 1.169 sum 7.753 -6.265 4.188 10.812 Atomic orbital electron populations 1.69657 1.08178 1.30508 1.33181 1.26079 0.94693 1.01423 0.90596 0.86596 0.81153 0.80383 0.79427 1.18193 1.21512 1.17287 1.19158 0.92837 0.96578 1.39423 0.88431 1.17611 0.93767 0.90846 0.89828 1.17945 0.86995 1.04235 0.94356 1.91237 1.68243 1.75954 1.76953 1.20726 0.91975 1.00379 1.00042 1.20181 0.98058 1.05378 0.99446 1.20753 0.94462 0.97996 0.95905 1.18393 0.92357 1.07414 0.95926 1.19633 0.96553 0.92853 0.94560 1.23068 0.92208 1.00347 0.87586 1.67653 1.20214 1.08234 1.23147 1.22451 0.96500 0.90925 0.98515 1.19882 1.00818 0.94555 0.96270 1.20882 1.04983 0.92899 0.93648 1.23044 0.95811 1.00895 1.01757 1.23013 0.94100 1.03329 1.00441 1.21451 0.98978 0.93488 0.96596 0.90214 0.87355 0.87542 0.87852 0.82284 0.83997 0.87107 0.88306 0.88574 0.88673 0.88654 0.85497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.07 13.93 55.55 0.77 -20.29 16 2 C 0.09 2.42 4.98 -17.31 -0.09 2.34 16 3 Si 0.90 20.96 24.71 -169.99 -4.20 16.76 16 4 H -0.26 -6.03 6.30 56.52 0.36 -5.67 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.25 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.45 -11.80 6.91 -37.93 -0.26 -12.06 16 8 H 0.10 2.74 7.77 -52.49 -0.41 2.33 16 9 C 0.08 2.02 4.68 -106.49 -0.50 1.52 16 10 C -0.02 -0.36 5.64 -38.70 -0.22 -0.58 16 11 F -0.14 -3.60 12.92 2.25 0.03 -3.57 16 12 C -0.11 -2.29 9.99 -39.55 -0.40 -2.69 16 13 C -0.21 -3.95 10.03 -39.41 -0.40 -4.34 16 14 C -0.07 -1.39 9.52 -39.31 -0.37 -1.77 16 15 C -0.14 -2.99 5.54 -104.27 -0.58 -3.57 16 16 C -0.03 -0.69 5.04 -104.75 -0.53 -1.22 16 17 C 0.13 2.64 9.57 -17.10 -0.16 2.48 16 18 N -0.49 -9.65 10.35 -12.88 -0.13 -9.78 16 19 C 0.07 1.21 10.47 -17.46 -0.18 1.03 16 20 C -0.11 -1.78 5.62 -104.53 -0.59 -2.37 16 21 C -0.11 -1.28 6.06 -91.77 -0.56 -1.84 16 22 C -0.18 -1.81 9.87 -26.73 -0.26 -2.08 16 23 C -0.17 -1.74 10.17 -26.74 -0.27 -2.01 16 24 C -0.08 -1.38 9.40 -38.87 -0.37 -1.75 16 25 H 0.29 6.97 8.30 -40.82 -0.34 6.63 16 26 H 0.11 1.94 8.06 -52.49 -0.42 1.52 16 27 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 28 H 0.10 1.70 8.05 -52.49 -0.42 1.28 16 29 H 0.16 3.52 7.30 -52.49 -0.38 3.14 16 30 H 0.14 1.99 6.02 -52.49 -0.32 1.67 16 31 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.10 1.00 6.19 -51.93 -0.32 0.68 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.13 1.97 8.06 -52.48 -0.42 1.55 16 LS Contribution 306.27 15.07 4.62 4.62 Total: -1.00 -27.43 306.27 -8.63 -36.06 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -3.99 Total: 5.10 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: -5.73 Total: -28.90 kcal Atomic # 7 Polarization: -30.71 SS G_CDS: 0.64 Total: -30.07 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.03 Total: -3.57 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.20 Total: 16.76 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.43 -8.63 -36.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204598065.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.683 kcal (2) G-P(sol) polarization free energy of solvation -27.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds