Wall clock time and date at job start Tue Mar 31 2020 06:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32559 * 1 3 3 C 1.47816 * 120.00080 * 2 1 4 4 C 1.39604 * 120.10058 * 359.72459 * 3 2 1 5 5 C 1.38010 * 120.00469 * 179.77056 * 4 3 2 6 6 C 1.38226 * 120.22476 * 0.50663 * 5 4 3 7 7 C 1.38999 * 120.21219 * 359.74542 * 6 5 4 8 8 N 1.39718 * 120.01081 * 180.02562 * 7 6 5 9 9 C 1.39812 * 119.99723 * 334.70607 * 8 7 6 10 10 C 1.39431 * 119.91362 * 328.33919 * 9 8 7 11 11 C 1.38359 * 120.46255 * 179.97438 * 10 9 8 12 12 C 1.38018 * 120.28969 * 0.02570 * 11 10 9 13 13 F 1.35103 * 120.08585 * 179.97438 * 12 11 10 14 14 C 1.41015 * 119.82425 * 359.97438 * 12 11 10 15 15 C 1.41295 * 120.22854 * 180.02562 * 14 12 11 16 16 H 1.07996 * 119.99606 * 27.39212 * 15 14 12 17 17 C 1.39910 * 119.99729 * 207.39970 * 15 14 12 18 18 N 1.30863 * 120.00550 * 11.89780 * 17 15 14 19 19 Si 1.86800 * 119.99767 * 191.89421 * 17 15 14 20 20 H 1.48499 * 109.47021 * 90.00071 * 19 17 15 21 21 H 1.48505 * 109.47502 * 209.99857 * 19 17 15 22 22 H 1.48499 * 109.47374 * 329.99898 * 19 17 15 23 23 C 1.38183 * 119.91548 * 148.06558 * 9 8 7 24 24 C 1.38705 * 119.98374 * 359.97438 * 7 6 5 25 25 H 1.07997 * 120.00559 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.00009 * 179.72662 * 1 2 3 27 27 H 1.08005 * 120.00022 * 180.02562 * 2 1 3 28 28 H 1.07997 * 120.00106 * 0.02562 * 4 3 2 29 29 H 1.08001 * 119.88747 * 180.23315 * 5 4 3 30 30 H 1.08000 * 119.89531 * 179.72773 * 6 5 4 31 31 H 0.96993 * 120.00464 * 154.70367 * 8 7 6 32 32 H 1.07997 * 119.76927 * 359.97438 * 10 9 8 33 33 H 1.07996 * 119.85911 * 179.97438 * 11 10 9 34 34 H 0.96996 * 120.00112 * 179.97438 * 18 17 15 35 35 H 1.07996 * 120.14649 * 0.02562 * 23 9 8 36 36 H 1.08006 * 120.11304 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0647 1.2801 0.0000 4 6 1.3688 2.4903 -0.0058 5 6 2.0609 3.6844 -0.0010 6 6 3.4431 3.6875 -0.0010 7 6 4.1453 2.4879 -0.0005 8 7 5.5424 2.4960 0.0000 9 6 6.2353 3.5946 -0.5173 10 6 5.6882 4.3297 -1.5682 11 6 6.3638 5.4193 -2.0885 12 6 7.5888 5.7903 -1.5720 13 9 8.2451 6.8546 -2.0835 14 6 8.1534 5.0555 -0.5091 15 6 9.4067 5.4281 0.0265 16 1 9.7326 6.4563 -0.0271 17 6 10.2254 4.4649 0.6261 18 7 9.9481 3.1933 0.4891 19 14 11.7145 4.9941 1.6220 20 1 11.3195 5.1822 3.0411 21 1 12.7653 3.9482 1.5352 22 1 12.2427 6.2724 1.0816 23 6 7.4579 3.9526 0.0180 24 6 3.4586 1.2828 0.0005 25 1 -0.5401 0.9352 0.0004 26 1 -0.5400 -0.9353 -0.0045 27 1 1.8656 -0.9353 -0.0004 28 1 0.2889 2.4923 -0.0099 29 1 1.5206 4.6195 -0.0017 30 1 3.9793 4.6250 -0.0017 31 1 6.0317 1.7395 0.3592 32 1 4.7304 4.0466 -1.9790 33 1 5.9312 5.9815 -2.9028 34 1 10.5159 2.5256 0.9045 35 1 7.8794 3.3855 0.8347 36 1 4.0021 0.3494 0.0013 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209923680.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:24 Heat of formation + Delta-G solvation = 15.674142 kcal Electronic energy + Delta-G solvation = -20595.367700 eV Core-core repulsion = 17344.510124 eV Total energy + Delta-G solvation = -3250.857575 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.107 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.22520 -39.53132 -37.68335 -35.31133 -33.74299 -33.17090 -30.34752 -29.85820 -28.81596 -26.97161 -25.44064 -23.07203 -22.37626 -21.28848 -20.67942 -19.25133 -17.53222 -16.87352 -16.33063 -16.07030 -15.50825 -15.22460 -14.87452 -14.48445 -14.04177 -13.94691 -13.33515 -13.23995 -13.15744 -12.67285 -12.59946 -12.04227 -11.85413 -11.76976 -11.56605 -11.34479 -11.13273 -11.09988 -10.76339 -10.69736 -10.42891 -10.18956 -9.73007 -9.50644 -9.33485 -8.26188 -7.86078 -7.64704 -6.94006 -6.41281 -4.54150 1.11978 1.71234 2.54004 2.66963 2.81420 3.01282 3.05559 3.10319 3.84548 3.93817 4.19447 4.49023 4.83060 4.95040 5.22413 5.36882 5.40990 5.59361 5.60576 5.81814 5.86282 5.94183 6.08241 6.14664 6.37899 6.40052 6.47109 6.65042 6.70265 6.81778 6.84489 6.92552 7.03849 7.11446 7.21342 7.46253 7.57519 7.75635 7.88916 8.14846 8.31235 8.49455 8.65500 8.74680 10.04947 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.024071 B = 0.003975 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.937155 B = 7042.417697 C = 7888.511015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.108 4.108 3 C -0.034 4.034 4 C -0.167 4.167 5 C -0.086 4.086 6 C -0.165 4.165 7 C 0.210 3.790 8 N -0.683 5.683 9 C 0.168 3.832 10 C -0.245 4.245 11 C -0.102 4.102 12 C -0.042 4.042 13 F -0.164 7.164 14 C 0.105 3.895 15 C -0.450 4.450 16 H 0.084 0.916 17 C 0.075 3.925 18 N -0.795 5.795 19 Si 0.916 3.084 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.260 1.260 23 C -0.176 4.176 24 C -0.175 4.175 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.133 0.867 31 H 0.404 0.596 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.282 0.718 35 H 0.131 0.869 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.456 -4.928 1.421 12.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.126 4.126 3 C -0.034 4.034 4 C -0.187 4.187 5 C -0.104 4.104 6 C -0.187 4.187 7 C 0.108 3.892 8 N -0.305 5.305 9 C 0.073 3.927 10 C -0.267 4.267 11 C -0.122 4.122 12 C -0.062 4.062 13 F -0.143 7.143 14 C 0.101 3.899 15 C -0.480 4.480 16 H 0.102 0.898 17 C -0.143 4.143 18 N -0.420 5.420 19 Si 0.740 3.260 20 H -0.192 1.192 21 H -0.201 1.201 22 H -0.184 1.184 23 C -0.199 4.199 24 C -0.197 4.197 25 H 0.120 0.880 26 H 0.118 0.882 27 H 0.132 0.868 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.151 0.849 31 H 0.239 0.761 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.093 0.907 35 H 0.149 0.851 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.295 -5.011 1.406 12.436 hybrid contribution 1.049 -0.089 0.395 1.125 sum -10.245 -5.101 1.802 11.586 Atomic orbital electron populations 1.24299 0.95720 1.01968 1.00666 1.21834 0.95147 0.95924 0.99693 1.18743 0.92426 0.92852 0.99412 1.20992 0.99165 0.91815 1.06682 1.20830 0.93626 0.97605 0.98374 1.21180 0.94122 0.97814 1.05556 1.17747 0.83749 0.93408 0.94265 1.42205 1.02034 1.20499 1.65715 1.17588 0.92828 0.88641 0.93603 1.20031 1.02577 1.01721 1.02372 1.20314 0.94039 0.97940 0.99922 1.17878 0.94979 0.92611 1.00780 1.91270 1.81530 1.54876 1.86627 1.17383 0.92730 0.90869 0.88872 1.19530 1.00275 0.96434 1.31737 0.89835 1.25911 0.99516 0.94339 0.94553 1.69790 1.36768 1.01175 1.34251 0.86175 0.79922 0.79661 0.80251 1.19158 1.20142 1.18427 1.20930 0.94181 1.01804 1.02937 1.20796 0.93355 0.96480 1.09092 0.88035 0.88158 0.86773 0.86543 0.86270 0.84935 0.76065 0.87856 0.87826 0.90706 0.85104 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.78 14.15 28.82 0.41 -1.37 16 2 C -0.11 -1.20 9.91 -37.57 -0.37 -1.57 16 3 C -0.03 -0.46 5.87 -105.04 -0.62 -1.07 16 4 C -0.17 -2.20 9.40 -39.16 -0.37 -2.57 16 5 C -0.09 -1.20 10.02 -39.67 -0.40 -1.60 16 6 C -0.17 -2.73 7.84 -39.30 -0.31 -3.04 16 7 C 0.21 3.55 6.05 -83.81 -0.51 3.04 16 8 N -0.68 -12.60 5.46 -8.47 -0.05 -12.64 16 9 C 0.17 3.65 5.91 -83.79 -0.49 3.16 16 10 C -0.25 -5.24 7.73 -39.09 -0.30 -5.54 16 11 C -0.10 -2.28 10.00 -39.62 -0.40 -2.68 16 12 C -0.04 -1.05 7.31 -38.61 -0.28 -1.33 16 13 F -0.16 -4.11 16.74 2.25 0.04 -4.07 16 14 C 0.11 2.75 5.56 -106.78 -0.59 2.16 16 15 C -0.45 -11.82 8.77 -37.79 -0.33 -12.16 16 16 H 0.08 2.18 7.75 -52.49 -0.41 1.77 16 17 C 0.07 1.82 5.24 -17.34 -0.09 1.73 16 18 N -0.79 -19.55 10.83 55.55 0.60 -18.94 16 19 Si 0.92 18.32 29.58 -169.99 -5.03 13.29 16 20 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 21 H -0.28 -5.39 7.11 56.52 0.40 -4.98 16 22 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 23 C -0.18 -4.29 8.56 -38.70 -0.33 -4.63 16 24 C -0.17 -2.60 9.68 -38.98 -0.38 -2.97 16 25 H 0.10 0.90 6.03 -52.49 -0.32 0.58 16 26 H 0.10 0.75 8.06 -52.49 -0.42 0.32 16 27 H 0.11 1.11 8.06 -52.48 -0.42 0.69 16 28 H 0.12 1.26 6.16 -52.49 -0.32 0.94 16 29 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.13 2.38 6.28 -52.49 -0.33 2.05 16 31 H 0.40 6.83 8.89 -40.82 -0.36 6.47 16 32 H 0.10 2.06 6.54 -52.49 -0.34 1.72 16 33 H 0.10 2.05 8.06 -52.49 -0.42 1.62 16 34 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 35 H 0.13 3.27 6.17 -52.49 -0.32 2.94 16 36 H 0.12 1.58 8.06 -52.48 -0.42 1.15 16 LS Contribution 312.31 15.07 4.71 4.71 Total: -1.00 -26.84 312.31 -8.74 -35.59 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -3.65 Total: 12.54 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: -5.36 Total: -30.46 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.56 Total: -31.59 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.04 Total: -4.07 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -26.84 -8.74 -35.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209923680.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.263 kcal (2) G-P(sol) polarization free energy of solvation -26.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds