Wall clock time and date at job start Tue Mar 31 2020 06:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33381 * 1 3 3 N 1.39561 * 119.99705 * 2 1 4 4 C 1.39794 * 120.00035 * 120.50897 * 3 2 1 5 5 C 1.39430 * 119.91875 * 352.21965 * 4 3 2 6 6 C 1.38343 * 120.46511 * 179.97438 * 5 4 3 7 7 C 1.38019 * 120.29307 * 0.02562 * 6 5 4 8 8 F 1.35100 * 120.08822 * 179.97438 * 7 6 5 9 9 C 1.41023 * 119.82021 * 359.97438 * 7 6 5 10 10 C 1.41294 * 120.22249 * 179.97438 * 9 7 6 11 11 H 1.07997 * 120.00160 * 333.02181 * 10 9 7 12 12 C 1.39914 * 119.99971 * 153.30144 * 10 9 7 13 13 N 1.30863 * 119.99834 * 348.48262 * 12 10 9 14 14 Si 1.86797 * 120.00058 * 168.48026 * 12 10 9 15 15 H 1.48497 * 109.47054 * 90.00248 * 14 12 10 16 16 H 1.48499 * 109.46990 * 209.99970 * 14 12 10 17 17 H 1.48500 * 109.47448 * 329.99823 * 14 12 10 18 18 C 1.38194 * 119.91275 * 172.50578 * 4 3 2 19 19 C 1.48109 * 120.00473 * 179.97438 * 2 1 3 20 20 C 1.39443 * 120.13636 * 179.72619 * 19 2 1 21 21 C 1.37988 * 119.86753 * 179.77304 * 20 19 2 22 22 C 1.38333 * 120.13467 * 0.50602 * 21 20 19 23 23 C 1.38338 * 120.26456 * 359.74315 * 22 21 20 24 24 C 1.38001 * 120.13151 * 0.02562 * 23 22 21 25 25 H 1.07994 * 119.99738 * 185.61390 * 1 2 3 26 26 H 1.07995 * 119.99999 * 5.61586 * 1 2 3 27 27 H 0.97003 * 119.99670 * 300.50287 * 3 2 1 28 28 H 1.08003 * 119.76654 * 0.02562 * 5 4 3 29 29 H 1.08000 * 119.85437 * 179.97438 * 6 5 4 30 30 H 0.97001 * 119.99833 * 180.02562 * 13 12 10 31 31 H 1.07994 * 120.14861 * 0.02562 * 18 4 3 32 32 H 1.08003 * 120.06328 * 359.97438 * 20 19 2 33 33 H 1.07998 * 119.93473 * 180.27441 * 21 20 19 34 34 H 1.07999 * 119.87339 * 179.73004 * 22 21 20 35 35 H 1.07995 * 119.93829 * 180.02562 * 23 22 21 36 36 H 1.07997 * 120.06640 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3338 0.0000 0.0000 3 7 2.0316 1.2087 0.0000 4 6 2.9133 1.5067 1.0430 5 6 2.9747 0.6755 2.1608 6 6 3.8435 0.9595 3.1992 7 6 4.6597 2.0709 3.1399 8 9 5.5062 2.3445 4.1566 9 6 4.6076 2.9199 2.0151 10 6 5.4390 4.0603 1.9458 11 1 5.7766 4.5385 2.8534 12 6 5.8203 4.5734 0.7012 13 7 5.6016 3.8803 -0.3871 14 14 6.6413 6.2478 0.5930 15 1 8.1136 6.0849 0.6986 16 1 6.3054 6.8807 -0.7076 17 1 6.1578 7.1088 1.7021 18 6 3.7177 2.6278 0.9663 19 6 2.0745 -1.2826 0.0006 20 6 3.4689 -1.2858 -0.0052 21 6 4.1533 -2.4840 0.0001 22 6 3.4590 -3.6804 0.0006 23 6 2.0756 -3.6837 0.0011 24 6 1.3800 -2.4918 0.0006 25 1 -0.5399 -0.9308 0.0915 26 1 -0.5400 0.9308 -0.0915 27 1 1.9047 1.8419 -0.7238 28 1 2.3401 -0.1967 2.2159 29 1 3.8826 0.3091 4.0606 30 1 5.8663 4.2359 -1.2499 31 1 3.6662 3.2742 0.1027 32 1 4.0121 -0.3523 -0.0105 33 1 5.2333 -2.4877 0.0001 34 1 3.9989 -4.6157 0.0003 35 1 1.5389 -4.6208 0.0018 36 1 0.3001 -2.4956 0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210987333.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:32 Heat of formation + Delta-G solvation = 20.969707 kcal Electronic energy + Delta-G solvation = -21207.574999 eV Core-core repulsion = 17956.947057 eV Total energy + Delta-G solvation = -3250.627942 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.107 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -47.11417 -39.44382 -37.75261 -35.67549 -33.63563 -31.79167 -30.62291 -29.71700 -29.17434 -26.84003 -25.31431 -23.10415 -22.10615 -21.41090 -20.64690 -19.13641 -17.58084 -16.75565 -16.19657 -15.89530 -15.49569 -14.93627 -14.67626 -14.27606 -14.00575 -13.89527 -13.56681 -13.28626 -13.14163 -12.58807 -12.53080 -12.00922 -11.68933 -11.59988 -11.55112 -11.35249 -11.06655 -10.99278 -10.74637 -10.54507 -10.18361 -10.00804 -9.51580 -9.37055 -8.82222 -8.68293 -7.89873 -7.52589 -6.83956 -6.31858 -4.46463 1.15477 1.65384 2.59569 2.74386 2.94663 3.04624 3.09708 3.18163 3.89866 4.07675 4.18420 4.56988 4.95263 5.09709 5.15783 5.33761 5.50486 5.65064 5.78241 5.93561 6.01109 6.03203 6.12688 6.24895 6.38986 6.51901 6.58646 6.63412 6.76162 6.87231 6.92574 7.05609 7.14593 7.19222 7.25696 7.58500 7.65897 7.86544 8.01114 8.26334 8.49799 8.62002 8.75071 8.86592 10.12860 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.020344 B = 0.004889 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.979361 B = 5726.348920 C = 6007.772407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.178 3.822 3 N -0.706 5.706 4 C 0.197 3.803 5 C -0.256 4.256 6 C -0.096 4.096 7 C -0.054 4.054 8 F -0.167 7.167 9 C 0.113 3.887 10 C -0.452 4.452 11 H 0.081 0.919 12 C 0.075 3.925 13 N -0.795 5.795 14 Si 0.913 3.087 15 H -0.269 1.269 16 H -0.276 1.276 17 H -0.260 1.260 18 C -0.201 4.201 19 C -0.060 4.060 20 C -0.079 4.079 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.131 4.131 24 C -0.112 4.112 25 H 0.109 0.891 26 H 0.103 0.897 27 H 0.400 0.600 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.280 0.720 31 H 0.131 0.869 32 H 0.135 0.865 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.279 -8.684 -3.235 11.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C 0.083 3.917 3 N -0.334 5.334 4 C 0.101 3.899 5 C -0.279 4.279 6 C -0.116 4.116 7 C -0.075 4.075 8 F -0.146 7.146 9 C 0.109 3.891 10 C -0.481 4.481 11 H 0.099 0.901 12 C -0.142 4.142 13 N -0.421 5.421 14 Si 0.737 3.263 15 H -0.194 1.194 16 H -0.201 1.201 17 H -0.184 1.184 18 C -0.225 4.225 19 C -0.062 4.062 20 C -0.097 4.097 21 C -0.142 4.142 22 C -0.140 4.140 23 C -0.149 4.149 24 C -0.130 4.130 25 H 0.127 0.873 26 H 0.121 0.879 27 H 0.236 0.764 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.091 0.909 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.208 -8.772 -3.381 11.266 hybrid contribution 0.557 0.894 -0.261 1.085 sum -5.652 -7.879 -3.642 10.357 Atomic orbital electron populations 1.24280 0.94144 1.02273 1.06853 1.18144 0.90589 0.84894 0.98115 1.41963 1.48143 1.17367 1.25955 1.17620 0.90294 0.95098 0.86921 1.19819 1.08331 1.03856 0.95870 1.20259 0.96875 0.96204 0.98230 1.17837 0.99302 0.99850 0.90469 1.91253 1.70391 1.94209 1.58739 1.17320 0.90973 0.91458 0.89312 1.19497 1.25840 1.09397 0.93392 0.90051 1.25883 0.94596 0.98612 0.95119 1.69807 1.36765 1.36098 0.99386 0.86226 0.79861 0.81565 0.78624 1.19391 1.20099 1.18411 1.20703 0.99253 0.99450 1.03087 1.19268 0.93640 0.92477 1.00837 1.21565 0.93616 0.98983 0.95513 1.21140 1.00057 0.92405 1.00570 1.21163 0.94377 0.97859 1.00553 1.20959 0.94343 0.97555 1.02021 1.21183 0.99598 0.91626 1.00595 0.87342 0.87855 0.76352 0.88310 0.88226 0.90893 0.85138 0.84675 0.86132 0.86528 0.86374 0.85950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -3.23 14.04 29.04 0.41 -2.82 16 2 C 0.18 2.90 5.18 -81.99 -0.42 2.47 16 3 N -0.71 -12.89 5.10 -7.31 -0.04 -12.93 16 4 C 0.20 4.30 4.98 -83.80 -0.42 3.88 16 5 C -0.26 -5.60 7.69 -39.10 -0.30 -5.90 16 6 C -0.10 -2.21 10.00 -39.62 -0.40 -2.60 16 7 C -0.05 -1.38 7.31 -38.61 -0.28 -1.66 16 8 F -0.17 -4.29 16.73 2.25 0.04 -4.25 16 9 C 0.11 3.01 5.57 -106.78 -0.60 2.41 16 10 C -0.45 -12.04 8.78 -37.79 -0.33 -12.37 16 11 H 0.08 2.16 7.74 -52.49 -0.41 1.75 16 12 C 0.08 1.86 5.25 -17.34 -0.09 1.76 16 13 N -0.79 -19.78 10.76 55.55 0.60 -19.19 16 14 Si 0.91 18.56 29.57 -169.99 -5.03 13.53 16 15 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 16 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 17 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 18 C -0.20 -4.95 8.51 -38.70 -0.33 -5.28 16 19 C -0.06 -0.97 4.78 -104.95 -0.50 -1.47 16 20 C -0.08 -1.37 8.08 -39.22 -0.32 -1.68 16 21 C -0.12 -1.86 10.03 -39.64 -0.40 -2.26 16 22 C -0.12 -1.57 10.04 -39.51 -0.40 -1.97 16 23 C -0.13 -1.62 10.03 -39.63 -0.40 -2.01 16 24 C -0.11 -1.51 9.40 -39.22 -0.37 -1.88 16 25 H 0.11 1.25 6.09 -52.49 -0.32 0.93 16 26 H 0.10 1.35 8.06 -52.49 -0.42 0.93 16 27 H 0.40 6.78 8.84 -40.82 -0.36 6.42 16 28 H 0.10 2.05 6.18 -52.48 -0.32 1.73 16 29 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 30 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 31 H 0.13 3.27 6.11 -52.49 -0.32 2.95 16 32 H 0.14 2.72 6.08 -52.48 -0.32 2.40 16 33 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.12 1.36 6.19 -52.49 -0.32 1.04 16 LS Contribution 308.94 15.07 4.66 4.66 Total: -1.00 -27.43 308.94 -8.54 -35.97 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -3.62 Total: 13.59 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: -5.14 Total: -31.38 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: 0.56 Total: -32.11 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.04 Total: -4.25 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.43 -8.54 -35.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210987333.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.936 kcal (2) G-P(sol) polarization free energy of solvation -27.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds