Wall clock time and date at job start Tue Mar 31 2020 06:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33381 * 1 3 3 N 1.39561 * 119.99705 * 2 1 4 4 C 1.39794 * 120.00035 * 120.50897 * 3 2 1 5 5 C 1.39430 * 119.91875 * 352.21965 * 4 3 2 6 6 C 1.38343 * 120.46511 * 179.97438 * 5 4 3 7 7 C 1.38019 * 120.29307 * 0.02562 * 6 5 4 8 8 F 1.35100 * 120.08822 * 179.97438 * 7 6 5 9 9 C 1.41023 * 119.82021 * 359.97438 * 7 6 5 10 10 C 1.41294 * 120.22249 * 179.97438 * 9 7 6 11 11 H 1.07997 * 120.00160 * 333.02181 * 10 9 7 12 12 C 1.39914 * 119.99971 * 153.30144 * 10 9 7 13 13 N 1.30863 * 119.99834 * 348.48262 * 12 10 9 14 14 Si 1.86797 * 120.00058 * 168.48026 * 12 10 9 15 15 H 1.48497 * 109.47054 * 90.00248 * 14 12 10 16 16 H 1.48499 * 109.46990 * 209.99970 * 14 12 10 17 17 H 1.48500 * 109.47448 * 329.99823 * 14 12 10 18 18 C 1.38194 * 119.91275 * 172.50578 * 4 3 2 19 19 C 1.48109 * 120.00473 * 179.97438 * 2 1 3 20 20 C 1.39443 * 120.13636 * 179.72619 * 19 2 1 21 21 C 1.37988 * 119.86753 * 179.77304 * 20 19 2 22 22 C 1.38333 * 120.13467 * 0.50602 * 21 20 19 23 23 C 1.38338 * 120.26456 * 359.74315 * 22 21 20 24 24 C 1.38001 * 120.13151 * 0.02562 * 23 22 21 25 25 H 1.07994 * 119.99738 * 185.61390 * 1 2 3 26 26 H 1.07995 * 119.99999 * 5.61586 * 1 2 3 27 27 H 0.97003 * 119.99670 * 300.50287 * 3 2 1 28 28 H 1.08003 * 119.76654 * 0.02562 * 5 4 3 29 29 H 1.08000 * 119.85437 * 179.97438 * 6 5 4 30 30 H 0.97001 * 119.99833 * 180.02562 * 13 12 10 31 31 H 1.07994 * 120.14861 * 0.02562 * 18 4 3 32 32 H 1.08003 * 120.06328 * 359.97438 * 20 19 2 33 33 H 1.07998 * 119.93473 * 180.27441 * 21 20 19 34 34 H 1.07999 * 119.87339 * 179.73004 * 22 21 20 35 35 H 1.07995 * 119.93829 * 180.02562 * 23 22 21 36 36 H 1.07997 * 120.06640 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3338 0.0000 0.0000 3 7 2.0316 1.2087 0.0000 4 6 2.9133 1.5067 1.0430 5 6 2.9747 0.6755 2.1608 6 6 3.8435 0.9595 3.1992 7 6 4.6597 2.0709 3.1399 8 9 5.5062 2.3445 4.1566 9 6 4.6076 2.9199 2.0151 10 6 5.4390 4.0603 1.9458 11 1 5.7766 4.5385 2.8534 12 6 5.8203 4.5734 0.7012 13 7 5.6016 3.8803 -0.3871 14 14 6.6413 6.2478 0.5930 15 1 8.1136 6.0849 0.6986 16 1 6.3054 6.8807 -0.7076 17 1 6.1578 7.1088 1.7021 18 6 3.7177 2.6278 0.9663 19 6 2.0745 -1.2826 0.0006 20 6 3.4689 -1.2858 -0.0052 21 6 4.1533 -2.4840 0.0001 22 6 3.4590 -3.6804 0.0006 23 6 2.0756 -3.6837 0.0011 24 6 1.3800 -2.4918 0.0006 25 1 -0.5399 -0.9308 0.0915 26 1 -0.5400 0.9308 -0.0915 27 1 1.9047 1.8419 -0.7238 28 1 2.3401 -0.1967 2.2159 29 1 3.8826 0.3091 4.0606 30 1 5.8663 4.2359 -1.2499 31 1 3.6662 3.2742 0.1027 32 1 4.0121 -0.3523 -0.0105 33 1 5.2333 -2.4877 0.0001 34 1 3.9989 -4.6157 0.0003 35 1 1.5389 -4.6208 0.0018 36 1 0.3001 -2.4956 0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210987333.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:32 Heat of formation + Delta-G solvation = 8.152517 kcal Electronic energy + Delta-G solvation = -21208.130794 eV Core-core repulsion = 17956.947057 eV Total energy + Delta-G solvation = -3251.183737 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.107 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.09382 -40.72596 -39.27789 -37.18762 -35.44662 -33.17448 -31.81197 -31.51601 -30.44496 -28.43587 -27.20461 -24.28806 -23.35297 -23.05899 -22.35948 -20.50310 -19.25153 -18.05003 -17.95945 -17.74380 -16.85564 -16.62172 -15.99139 -15.86930 -15.79851 -15.10257 -14.93774 -14.78133 -14.42524 -14.38279 -13.79076 -13.63767 -13.39980 -13.33481 -13.05038 -12.81536 -12.75551 -12.30250 -12.16824 -12.03733 -11.76567 -11.43609 -11.34796 -11.11143 -10.38469 -9.80311 -9.46023 -9.03113 -8.68568 -8.00862 -6.44941 0.05446 0.55709 0.89829 0.96386 1.36603 1.45942 1.51220 1.63824 2.19404 2.65938 2.73263 3.06157 3.56707 3.83846 4.06988 4.13336 4.17875 4.30030 4.31719 4.61296 4.66783 4.70324 4.86522 4.95930 5.02533 5.09604 5.15662 5.19540 5.30492 5.40621 5.49130 5.60510 5.66861 5.74957 5.79327 5.91410 6.05301 6.08972 6.15560 6.42689 6.75123 6.81548 6.97028 7.07101 8.29273 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.020344 B = 0.004889 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.979361 B = 5726.348920 C = 6007.772407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.135 3.865 3 N -0.700 5.700 4 C 0.216 3.784 5 C -0.247 4.247 6 C -0.092 4.092 7 C -0.094 4.094 8 F -0.175 7.175 9 C 0.088 3.912 10 C -0.493 4.493 11 H 0.068 0.932 12 C 0.039 3.961 13 N -0.819 5.819 14 Si 0.984 3.016 15 H -0.264 1.264 16 H -0.260 1.260 17 H -0.261 1.261 18 C -0.222 4.222 19 C -0.073 4.073 20 C -0.112 4.112 21 C -0.138 4.138 22 C -0.120 4.120 23 C -0.122 4.122 24 C -0.112 4.112 25 H 0.141 0.859 26 H 0.111 0.889 27 H 0.404 0.596 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.289 0.711 31 H 0.119 0.881 32 H 0.093 0.907 33 H 0.120 0.880 34 H 0.146 0.854 35 H 0.157 0.843 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.458 -10.734 -4.010 14.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.042 3.958 3 N -0.328 5.328 4 C 0.117 3.883 5 C -0.269 4.269 6 C -0.111 4.111 7 C -0.115 4.115 8 F -0.154 7.154 9 C 0.084 3.916 10 C -0.523 4.523 11 H 0.086 0.914 12 C -0.176 4.176 13 N -0.444 5.444 14 Si 0.804 3.196 15 H -0.189 1.189 16 H -0.183 1.183 17 H -0.185 1.185 18 C -0.246 4.246 19 C -0.075 4.075 20 C -0.130 4.130 21 C -0.156 4.156 22 C -0.138 4.138 23 C -0.139 4.139 24 C -0.130 4.130 25 H 0.158 0.842 26 H 0.129 0.871 27 H 0.240 0.760 28 H 0.134 0.866 29 H 0.140 0.860 30 H 0.100 0.900 31 H 0.137 0.863 32 H 0.111 0.889 33 H 0.138 0.862 34 H 0.164 0.836 35 H 0.174 0.826 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.428 -10.860 -4.179 14.368 hybrid contribution 1.061 1.333 -0.089 1.706 sum -7.367 -9.527 -4.268 12.777 Atomic orbital electron populations 1.24647 0.93017 1.04140 1.01938 1.18433 0.91488 0.84092 1.01814 1.41924 1.47366 1.18539 1.24984 1.17609 0.89431 0.93585 0.87636 1.19981 1.07792 1.03904 0.95228 1.20530 0.95975 0.95384 0.99217 1.18112 1.01072 1.01456 0.90849 1.91207 1.70850 1.94440 1.58951 1.17670 0.91598 0.91996 0.90342 1.19653 1.27798 1.10806 0.94003 0.91389 1.26672 0.94766 1.02049 0.94127 1.69851 1.37081 1.37529 0.99967 0.85175 0.78709 0.76612 0.79062 1.18911 1.18349 1.18536 1.20606 1.00483 1.00899 1.02647 1.19348 0.93030 0.93464 1.01627 1.21323 0.94595 0.98106 0.98983 1.21270 1.00381 0.92836 1.01135 1.21507 0.95143 0.97887 0.99227 1.21436 0.94144 0.98747 0.99618 1.21518 1.01059 0.90778 0.99612 0.84158 0.87114 0.76005 0.86554 0.85953 0.90005 0.86299 0.88881 0.86185 0.83609 0.82560 0.83026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.68 14.04 66.72 0.94 -3.74 16 2 C 0.14 4.17 5.18 39.43 0.20 4.37 16 3 N -0.70 -25.66 5.10 -177.04 -0.90 -26.57 16 4 C 0.22 9.69 4.98 38.15 0.19 9.88 16 5 C -0.25 -10.83 7.69 22.58 0.17 -10.66 16 6 C -0.09 -4.29 10.00 22.24 0.22 -4.07 16 7 C -0.09 -5.06 7.31 22.90 0.17 -4.89 16 8 F -0.18 -9.47 16.73 44.97 0.75 -8.72 16 9 C 0.09 4.93 5.57 -21.26 -0.12 4.81 16 10 C -0.49 -27.85 8.78 23.43 0.21 -27.64 16 11 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 12 C 0.04 1.99 5.25 85.24 0.45 2.44 16 13 N -0.82 -42.33 10.76 21.82 0.23 -42.10 16 14 Si 0.98 38.98 29.57 68.60 2.03 41.00 16 15 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 16 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 17 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 18 C -0.22 -11.50 8.51 22.84 0.19 -11.31 16 19 C -0.07 -2.23 4.78 -20.08 -0.10 -2.32 16 20 C -0.11 -3.93 8.08 22.50 0.18 -3.74 16 21 C -0.14 -4.11 10.03 22.23 0.22 -3.89 16 22 C -0.12 -2.74 10.04 22.32 0.22 -2.51 16 23 C -0.12 -2.46 10.03 22.24 0.22 -2.24 16 24 C -0.11 -2.57 9.40 22.50 0.21 -2.35 16 25 H 0.14 2.42 6.09 -2.91 -0.02 2.40 16 26 H 0.11 2.48 8.06 -2.91 -0.02 2.46 16 27 H 0.40 13.88 8.84 -92.71 -0.82 13.06 16 28 H 0.12 4.69 6.18 -2.91 -0.02 4.68 16 29 H 0.12 5.05 8.06 -2.91 -0.02 5.02 16 30 H 0.29 13.44 8.30 -92.71 -0.77 12.67 16 31 H 0.12 6.32 6.11 -2.91 -0.02 6.30 16 32 H 0.09 3.99 6.08 -2.91 -0.02 3.98 16 33 H 0.12 3.40 8.06 -2.91 -0.02 3.37 16 34 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 35 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 36 H 0.15 2.50 6.19 -2.91 -0.02 2.49 16 Total: -1.00 -63.50 308.94 6.01 -57.49 By element: Atomic # 1 Polarization: 36.46 SS G_CDS: 0.30 Total: 36.76 kcal Atomic # 6 Polarization: -61.47 SS G_CDS: 3.59 Total: -57.87 kcal Atomic # 7 Polarization: -68.00 SS G_CDS: -0.67 Total: -68.66 kcal Atomic # 9 Polarization: -9.47 SS G_CDS: 0.75 Total: -8.72 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.00 kcal Total: -63.50 6.01 -57.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210987333.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.646 kcal (2) G-P(sol) polarization free energy of solvation -63.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds