Wall clock time and date at job start Tue Mar 31 2020 05:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 120.00078 * 2 1 4 4 H 1.48506 * 109.46652 * 240.00230 * 3 2 1 5 5 H 1.48504 * 109.47097 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47112 * 120.00267 * 3 2 1 7 7 C 1.37873 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00297 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99973 * 359.72223 * 7 2 1 10 10 N 1.46899 * 109.47245 * 180.27805 * 9 7 2 11 11 C 1.47484 * 110.99885 * 265.97378 * 10 9 7 12 12 C 1.53508 * 87.93133 * 221.29460 * 11 10 9 13 13 O 1.42900 * 114.17315 * 272.37451 * 12 11 10 14 14 C 1.35894 * 117.00387 * 250.58886 * 13 12 11 15 15 C 1.38754 * 120.06145 * 185.45129 * 14 13 12 16 16 C 1.38117 * 119.94672 * 179.70129 * 15 14 13 17 17 C 1.38289 * 120.05518 * 0.59109 * 16 15 14 18 18 C 1.38244 * 120.11364 * 359.68636 * 17 16 15 19 19 C 1.50693 * 119.97553 * 180.02562 * 18 17 16 20 20 F 1.39895 * 109.47457 * 119.97438 * 19 18 17 21 21 F 1.39902 * 109.47048 * 239.97727 * 19 18 17 22 22 C 1.38171 * 120.05238 * 0.02562 * 18 17 16 23 23 C 1.47482 * 111.00200 * 170.00220 * 10 9 7 24 24 H 0.97004 * 119.99310 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46985 * 300.27405 * 9 7 2 26 26 H 1.09003 * 109.46879 * 60.27731 * 9 7 2 27 27 H 1.08997 * 113.47377 * 336.05976 * 11 10 9 28 28 H 1.08998 * 113.47428 * 106.52702 * 11 10 9 29 29 H 1.09000 * 114.34463 * 139.67703 * 12 11 10 30 30 H 1.08001 * 120.02345 * 359.97438 * 15 14 13 31 31 H 1.08002 * 119.97236 * 180.29802 * 16 15 14 32 32 H 1.08001 * 119.94575 * 179.70020 * 17 16 15 33 33 H 1.08995 * 109.47010 * 359.97270 * 19 18 17 34 34 H 1.07996 * 120.02761 * 180.02562 * 22 18 17 35 35 H 1.08994 * 113.46999 * 253.46831 * 23 10 9 36 36 H 1.09001 * 113.47380 * 23.93180 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0074 10 7 2.2055 -3.6157 0.0134 11 6 2.4755 -4.0875 -1.3577 12 6 2.4190 -5.5225 -0.8153 13 8 3.6676 -6.0107 -0.3207 14 6 4.2866 -6.9745 -1.0519 15 6 5.4431 -7.5742 -0.5743 16 6 6.0669 -8.5578 -1.3166 17 6 5.5466 -8.9365 -2.5406 18 6 4.3977 -8.3366 -3.0215 19 6 3.8331 -8.7521 -4.3555 20 9 2.5354 -9.2442 -4.1798 21 9 3.8008 -7.6470 -5.2128 22 6 3.7666 -7.3563 -2.2800 23 6 1.5184 -4.8973 0.2592 24 1 -0.4849 0.8401 0.0004 25 1 0.6244 -2.5522 0.8978 26 1 0.6243 -2.5615 -0.8822 27 1 1.6756 -3.8575 -2.0614 28 1 3.4597 -3.8021 -1.7291 29 1 1.9086 -6.2301 -1.4688 30 1 5.8527 -7.2751 0.3793 31 1 6.9644 -9.0282 -0.9429 32 1 6.0385 -9.7024 -3.1218 33 1 4.4611 -9.5301 -4.7893 34 1 2.8689 -6.8882 -2.6558 35 1 1.6915 -5.2981 1.2579 36 1 0.4630 -4.8833 -0.0131 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225540449.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:54 Heat of formation + Delta-G solvation = -67.386119 kcal Electronic energy + Delta-G solvation = -21525.218219 eV Core-core repulsion = 17839.989656 eV Total energy + Delta-G solvation = -3685.228563 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.18894 -47.17640 -40.58455 -39.05165 -36.79334 -32.90435 -32.17185 -30.31181 -29.21697 -26.52477 -25.56179 -25.27824 -23.06371 -22.06227 -21.45102 -19.69848 -18.34561 -17.51656 -17.40527 -16.48525 -16.32787 -16.18061 -15.73247 -15.40755 -14.80546 -14.35929 -14.26809 -14.11059 -13.73371 -13.54815 -13.41914 -13.25254 -12.80402 -12.48460 -12.15931 -12.01006 -11.85556 -11.72860 -11.31727 -10.95739 -10.86463 -10.53324 -10.37827 -10.13469 -9.70425 -9.32297 -9.29558 -8.44475 -8.32956 -7.89721 -6.04653 -4.05846 0.88178 1.18029 3.10733 3.34274 3.37426 3.41386 3.41662 3.45137 3.89146 4.25982 4.41739 4.61850 4.65982 4.75462 4.80660 4.81571 4.98689 5.10423 5.23818 5.30666 5.35406 5.55629 5.71875 5.83848 5.99378 6.06331 6.10242 6.12791 6.14965 6.25335 6.53051 6.57199 7.11173 7.45129 7.61683 7.83134 8.07294 8.43021 9.01467 9.58401 11.06457 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.023356 B = 0.003461 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.532590 B = 8088.459328 C = 8426.545347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.156 3.844 10 N -0.456 5.456 11 C -0.005 4.005 12 C 0.041 3.959 13 O -0.272 6.272 14 C 0.140 3.860 15 C -0.134 4.134 16 C -0.083 4.083 17 C -0.133 4.133 18 C -0.132 4.132 19 C 0.312 3.688 20 F -0.200 7.200 21 F -0.198 7.198 22 C -0.174 4.174 23 C 0.001 3.999 24 H 0.262 0.738 25 H 0.031 0.969 26 H 0.004 0.996 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.129 0.871 33 H 0.119 0.881 34 H 0.137 0.863 35 H 0.086 0.914 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.185 -21.135 -6.692 23.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.030 3.970 10 N -0.179 5.179 11 C -0.135 4.135 12 C -0.016 4.016 13 O -0.184 6.184 14 C 0.094 3.906 15 C -0.153 4.153 16 C -0.101 4.101 17 C -0.152 4.152 18 C -0.133 4.133 19 C 0.259 3.741 20 F -0.181 7.181 21 F -0.179 7.179 22 C -0.192 4.192 23 C -0.128 4.128 24 H 0.072 0.928 25 H 0.049 0.951 26 H 0.022 0.978 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.155 0.845 31 H 0.153 0.847 32 H 0.146 0.854 33 H 0.136 0.864 34 H 0.154 0.846 35 H 0.104 0.896 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.564 -20.614 -6.074 23.523 hybrid contribution -0.657 0.924 -0.737 1.352 sum 8.908 -19.690 -6.811 22.659 Atomic orbital electron populations 1.69948 1.06077 1.26968 1.51073 1.25004 0.94902 0.99414 0.95357 0.86518 0.79416 0.82509 0.78739 1.20231 1.21314 1.20101 1.21055 0.93611 0.89707 1.50013 0.91866 1.20313 0.90703 0.89273 0.96746 1.69102 1.33358 1.01427 1.13977 1.24247 1.02991 0.91683 0.94534 1.23789 0.83780 0.95530 0.98505 1.86213 1.34609 1.50075 1.47507 1.19095 0.92774 0.88685 0.90067 1.20641 0.94922 0.97865 1.01846 1.20911 0.99343 0.96059 0.93796 1.20767 0.95881 1.01302 0.97236 1.20095 0.97817 0.99405 0.95989 1.20431 0.81169 0.85152 0.87367 1.93019 1.41207 1.87873 1.96015 1.93036 1.96634 1.56477 1.71772 1.21130 1.02464 1.00338 0.95297 1.24003 0.96260 0.93173 0.99359 0.92833 0.95116 0.97788 0.90448 0.89895 0.89593 0.84503 0.84716 0.85357 0.86411 0.84572 0.89611 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.64 9.39 -34.44 -0.32 -14.97 16 8 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 9 C 0.16 4.10 4.57 -4.97 -0.02 4.07 16 10 N -0.46 -10.15 6.32 -246.09 -1.55 -11.71 16 11 C 0.00 -0.09 7.55 -7.54 -0.06 -0.15 16 12 C 0.04 0.65 4.07 -26.20 -0.11 0.54 16 13 O -0.27 -4.44 10.18 -19.41 -0.20 -4.64 16 14 C 0.14 1.93 6.68 -39.21 -0.26 1.67 16 15 C -0.13 -1.52 9.99 -39.44 -0.39 -1.92 16 16 C -0.08 -0.73 10.04 -39.61 -0.40 -1.13 16 17 C -0.13 -1.14 9.67 -39.56 -0.38 -1.53 16 18 C -0.13 -1.40 5.37 -104.65 -0.56 -1.96 16 19 C 0.31 2.91 5.45 36.00 0.20 3.10 16 20 F -0.20 -2.23 17.26 2.25 0.04 -2.19 16 21 F -0.20 -2.31 17.26 2.25 0.04 -2.27 16 22 C -0.17 -2.22 8.58 -39.43 -0.34 -2.56 16 23 C 0.00 0.02 7.52 -7.54 -0.06 -0.03 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.03 0.86 8.08 -51.93 -0.42 0.44 16 26 H 0.00 0.12 7.30 -51.93 -0.38 -0.26 16 27 H 0.08 1.44 7.42 -51.93 -0.39 1.05 16 28 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 29 H 0.09 1.16 5.90 -51.93 -0.31 0.86 16 30 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.13 0.68 7.94 -52.49 -0.42 0.26 16 33 H 0.12 0.62 7.87 -51.93 -0.41 0.21 16 34 H 0.14 1.76 5.89 -52.49 -0.31 1.45 16 35 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.08 1.31 7.91 -51.93 -0.41 0.90 16 LS Contribution 316.32 15.07 4.77 4.77 Total: -1.00 -32.43 316.32 -8.27 -40.70 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -4.27 Total: -2.06 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -2.80 Total: -13.39 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: -0.82 Total: -37.96 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.20 Total: -4.64 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.08 Total: -4.46 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.43 -8.27 -40.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225540449.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.688 kcal (2) G-P(sol) polarization free energy of solvation -32.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds