Wall clock time and date at job start Tue Mar 31 2020 06:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38266 * 119.96225 * 2 1 4 4 C 1.38242 * 120.13720 * 179.97438 * 3 2 1 5 5 C 1.38398 * 120.06248 * 359.70849 * 4 3 2 6 6 F 1.35106 * 120.03167 * 180.27683 * 5 4 3 7 7 C 1.38809 * 119.93335 * 0.54311 * 5 4 3 8 8 O 1.36013 * 120.06903 * 179.74794 * 7 5 4 9 9 C 1.42904 * 117.00068 * 269.72779 * 8 7 5 10 10 C 1.53514 * 114.16878 * 209.99947 * 9 8 7 11 11 N 1.47482 * 87.93039 * 220.33055 * 10 9 8 12 12 C 1.46901 * 110.99764 * 138.70591 * 11 10 9 13 13 C 1.50701 * 109.46921 * 169.99672 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 C 1.47480 * 87.83699 * 27.01095 * 11 10 9 22 22 C 1.38353 * 119.96283 * 179.97438 * 2 1 3 23 23 F 1.35095 * 120.03381 * 0.04281 * 22 2 1 24 24 H 1.08996 * 109.47411 * 270.02049 * 1 2 3 25 25 H 1.09007 * 109.47028 * 30.02484 * 1 2 3 26 26 H 1.09003 * 109.47519 * 150.02016 * 1 2 3 27 27 H 1.07997 * 119.93901 * 359.97438 * 3 2 1 28 28 H 1.07993 * 119.96481 * 179.97438 * 4 3 2 29 29 H 1.08997 * 113.25708 * 342.95289 * 9 8 7 30 30 H 1.08994 * 113.47382 * 105.55899 * 10 9 8 31 31 H 1.09001 * 113.53015 * 335.10309 * 10 9 8 32 32 H 1.09002 * 109.47401 * 49.99700 * 12 11 10 33 33 H 1.09001 * 109.46874 * 289.99713 * 12 11 10 34 34 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 35 35 H 1.08999 * 113.47664 * 87.75895 * 21 11 10 36 36 H 1.08994 * 113.47488 * 218.22090 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1979 0.0000 4 6 3.5800 1.2021 0.0005 5 6 4.2769 0.0064 0.0072 6 9 5.6279 0.0113 0.0133 7 6 3.5865 -1.1978 0.0019 8 8 4.2687 -2.3744 0.0032 9 6 4.5949 -2.9367 -1.2694 10 6 4.6743 -4.4697 -1.2776 11 7 5.8543 -4.3506 -2.1543 12 6 6.8965 -5.3109 -1.7674 13 6 7.9739 -5.3343 -2.8208 14 1 7.8928 -4.6991 -3.6905 15 6 9.0638 -6.1659 -2.6738 16 7 9.1629 -6.9390 -1.6146 17 14 10.3996 -6.1945 -3.9793 18 1 10.9962 -4.8405 -4.1068 19 1 11.4532 -7.1652 -3.5882 20 1 9.8113 -6.6008 -5.2808 21 6 6.1017 -3.0292 -1.5481 22 6 2.1980 -1.1986 0.0005 23 9 1.5225 -2.3685 0.0002 24 1 -0.3634 0.0004 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6560 2.1322 -0.0004 28 1 4.1165 2.1393 0.0001 29 1 4.0117 -2.5155 -2.0883 30 1 3.8210 -4.9461 -1.7603 31 1 4.9001 -4.8990 -0.3015 32 1 6.4584 -6.3045 -1.6736 33 1 7.3287 -5.0127 -0.8122 34 1 9.9295 -7.5244 -1.5113 35 1 6.7087 -3.0731 -0.6437 36 1 6.4582 -2.2848 -2.2600 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225895849.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:07 Heat of formation + Delta-G solvation = -62.747366 kcal Electronic energy + Delta-G solvation = -21859.110966 eV Core-core repulsion = 18174.083554 eV Total energy + Delta-G solvation = -3685.027412 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -49.11998 -49.01609 -40.08952 -39.05617 -36.98581 -32.90558 -32.50719 -30.42083 -29.02711 -27.02160 -25.50423 -25.20124 -23.24758 -22.26162 -21.48623 -19.57312 -18.43618 -17.80648 -17.69204 -16.49937 -16.23423 -15.81273 -15.43919 -15.30971 -15.06612 -14.55921 -14.41308 -14.26990 -14.20413 -13.69335 -13.29206 -12.96558 -12.68361 -12.31725 -12.29838 -12.08822 -11.94952 -11.69304 -11.42768 -11.32701 -10.89084 -10.59915 -10.23635 -9.81867 -9.50913 -9.24778 -8.99494 -8.81730 -8.43245 -7.96841 -6.02857 -4.04482 0.59069 0.65088 2.87119 3.34937 3.38162 3.39373 3.42036 3.73048 4.16115 4.30502 4.40333 4.43771 4.66824 4.76891 4.89741 4.97129 5.16324 5.22970 5.29062 5.32376 5.49194 5.55874 5.59804 5.78358 5.79653 5.88877 6.01534 6.10484 6.23835 6.31754 6.42169 6.53937 7.17276 7.42162 7.62488 7.83238 8.07998 8.42894 9.02168 9.59365 11.08286 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.032110 B = 0.003594 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.798999 B = 7789.957619 C = 8326.339944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.122 4.122 3 C -0.074 4.074 4 C -0.150 4.150 5 C 0.107 3.893 6 F -0.119 7.119 7 C 0.040 3.960 8 O -0.308 6.308 9 C 0.051 3.949 10 C 0.001 3.999 11 N -0.461 5.461 12 C 0.161 3.839 13 C -0.507 4.507 14 H 0.063 0.937 15 C 0.054 3.946 16 N -0.900 5.900 17 Si 0.901 3.099 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.000 4.000 22 C 0.107 3.893 23 F -0.120 7.120 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.031 0.969 33 H 0.007 0.993 34 H 0.262 0.738 35 H 0.076 0.924 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.161 17.675 4.647 25.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.123 4.123 3 C -0.092 4.092 4 C -0.169 4.169 5 C 0.087 3.913 6 F -0.097 7.097 7 C -0.007 4.007 8 O -0.224 6.224 9 C -0.004 4.004 10 C -0.128 4.128 11 N -0.186 5.186 12 C 0.035 3.965 13 C -0.545 4.545 14 H 0.081 0.919 15 C -0.147 4.147 16 N -0.539 5.539 17 Si 0.729 3.271 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.129 4.129 22 C 0.087 3.913 23 F -0.098 7.098 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.162 0.838 28 H 0.164 0.836 29 H 0.115 0.885 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.024 0.976 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.975 17.250 4.154 24.556 hybrid contribution 1.181 -0.317 0.146 1.231 sum -15.794 16.934 4.300 23.552 Atomic orbital electron populations 1.20729 0.89356 1.03692 1.03122 1.19942 0.97580 0.91244 1.03578 1.20758 0.92859 0.97479 0.98116 1.21166 0.94826 0.97056 1.03858 1.17842 0.77881 0.93129 1.02446 1.91574 1.27605 1.97192 1.93341 1.18701 0.89084 0.86879 1.06004 1.86267 1.72874 1.32719 1.30491 1.24578 0.97513 0.95114 0.83198 1.24084 0.97720 0.92811 0.98163 1.69030 1.05504 1.02979 1.41047 1.20286 0.89199 0.91128 0.95854 1.21046 1.03970 1.23162 1.06369 0.91854 1.25008 0.98324 0.95437 0.95924 1.69948 1.30476 1.25568 1.27909 0.86508 0.81047 0.77782 0.81769 1.20216 1.21311 1.20123 1.24257 0.93991 0.95468 0.99176 1.17637 0.88396 0.81915 1.03334 1.91523 1.79404 1.45466 1.93436 0.90485 0.90609 0.90879 0.83770 0.83574 0.88458 0.89822 0.90854 0.95055 0.97555 0.92799 0.90614 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 9.83 36.01 0.35 -0.38 16 2 C -0.12 -1.12 5.88 -104.57 -0.62 -1.73 16 3 C -0.07 -0.55 9.69 -39.57 -0.38 -0.94 16 4 C -0.15 -1.35 10.02 -39.52 -0.40 -1.75 16 5 C 0.11 1.37 7.31 -39.31 -0.29 1.08 16 6 F -0.12 -1.75 17.11 2.25 0.04 -1.71 16 7 C 0.04 0.57 5.63 -39.14 -0.22 0.35 16 8 O -0.31 -5.28 9.84 -19.78 -0.19 -5.47 16 9 C 0.05 0.90 4.72 -26.20 -0.12 0.77 16 10 C 0.00 0.03 7.52 -7.54 -0.06 -0.03 16 11 N -0.46 -10.49 6.32 -246.10 -1.55 -12.05 16 12 C 0.16 4.36 4.57 -4.97 -0.02 4.34 16 13 C -0.51 -14.81 9.39 -34.44 -0.32 -15.13 16 14 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 15 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.31 13.29 55.43 0.74 -26.58 16 17 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C 0.00 0.01 7.55 -7.54 -0.06 -0.05 16 22 C 0.11 1.34 7.25 -39.31 -0.28 1.05 16 23 F -0.12 -1.63 16.32 2.25 0.04 -1.59 16 24 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 26 H 0.07 0.52 7.64 -51.93 -0.40 0.12 16 27 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 28 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 29 H 0.10 1.55 7.96 -51.93 -0.41 1.14 16 30 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.07 1.44 7.91 -51.93 -0.41 1.03 16 32 H 0.03 0.89 8.08 -51.93 -0.42 0.48 16 33 H 0.01 0.19 7.30 -51.93 -0.38 -0.19 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.08 1.62 7.42 -51.93 -0.39 1.23 16 36 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 LS Contribution 319.60 15.07 4.82 4.82 Total: -1.00 -32.13 319.60 -8.14 -40.27 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: -4.48 Total: -3.89 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -2.51 Total: -10.93 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: -0.82 Total: -38.62 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.19 Total: -5.47 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.08 Total: -3.30 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.13 -8.14 -40.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225895849.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.475 kcal (2) G-P(sol) polarization free energy of solvation -32.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds