Wall clock time and date at job start Tue Mar 31 2020 06:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45204 * 109.47040 * 2 1 4 4 C 1.34225 * 116.99989 * 180.02562 * 3 2 1 5 5 O 1.20828 * 120.00055 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00095 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47199 * 179.97438 * 6 4 3 8 8 H 1.08998 * 109.47404 * 54.99904 * 7 6 4 9 9 C 1.50707 * 109.47051 * 174.99729 * 7 6 4 10 10 H 1.08006 * 119.99913 * 240.00338 * 9 7 6 11 11 C 1.37874 * 119.99979 * 59.99858 * 9 7 6 12 12 N 1.31511 * 120.00290 * 359.97438 * 11 9 7 13 13 Si 1.86797 * 119.99883 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.47224 * 90.00102 * 13 11 9 15 15 H 1.48501 * 109.47050 * 210.00076 * 13 11 9 16 16 H 1.48504 * 109.47477 * 329.99988 * 13 11 9 17 17 O 1.42890 * 109.47301 * 294.99460 * 7 6 4 18 18 C 1.35713 * 117.00472 * 149.99844 * 17 7 6 19 19 C 1.41928 * 126.88329 * 180.02562 * 18 17 7 20 20 C 1.35266 * 103.95934 * 180.28397 * 19 18 17 21 21 C 1.50703 * 126.70948 * 179.70834 * 20 19 18 22 22 C 1.52999 * 109.47180 * 89.99783 * 21 20 19 23 23 O 1.34086 * 106.58326 * 359.59447 * 20 19 18 24 24 N 1.20916 * 111.71755 * 0.44598 * 23 20 19 25 25 H 1.08995 * 109.46560 * 60.00496 * 1 2 3 26 26 H 1.09000 * 109.46682 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47257 * 300.00064 * 1 2 3 28 28 H 1.08996 * 109.47257 * 239.99936 * 2 1 3 29 29 H 1.09002 * 109.46882 * 119.99709 * 2 1 3 30 30 H 1.09000 * 109.47612 * 59.99258 * 6 4 3 31 31 H 1.09003 * 109.46663 * 299.99332 * 6 4 3 32 32 H 0.96990 * 120.00341 * 179.97438 * 12 11 9 33 33 H 1.08002 * 128.01654 * 0.02562 * 19 18 17 34 34 H 1.08997 * 109.47566 * 209.99938 * 21 20 19 35 35 H 1.09001 * 109.46947 * 329.99758 * 21 20 19 36 36 H 1.08997 * 109.46997 * 300.00503 * 22 21 20 37 37 H 1.08997 * 109.46763 * 60.00288 * 22 21 20 38 38 H 1.08997 * 109.47048 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8574 -0.0001 8 1 5.7806 2.2501 -0.8422 9 6 6.0243 4.2447 -0.1235 10 1 6.6590 4.4934 -0.9612 11 6 5.7407 5.1963 0.8330 12 7 4.9674 4.8936 1.8528 13 14 6.4537 6.9160 0.6797 14 1 5.5185 7.7726 -0.0930 15 1 6.6495 7.4932 2.0339 16 1 7.7599 6.8495 -0.0236 17 8 5.8946 2.2635 1.2206 18 6 7.0518 1.5560 1.1749 19 6 7.6823 0.8836 2.2541 20 6 8.7925 0.3455 1.6994 21 6 9.8415 -0.4781 2.4011 22 6 9.4600 -1.9580 2.3298 23 8 8.7759 0.6860 0.4027 24 7 7.8087 1.3581 0.1289 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.5851 3.4692 0.8904 31 1 3.5844 3.4700 -0.8896 32 1 4.7681 5.5629 2.5258 33 1 7.3541 0.8201 3.2811 34 1 10.8060 -0.3278 1.9162 35 1 9.9075 -0.1698 3.4446 36 1 8.4955 -2.1084 2.8148 37 1 9.3940 -2.2663 1.2864 38 1 10.2189 -2.5537 2.8369 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234650609.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:57 Heat of formation + Delta-G solvation = -73.443138 kcal Electronic energy + Delta-G solvation = -22744.071106 eV Core-core repulsion = 19169.667406 eV Total energy + Delta-G solvation = -3574.403700 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.89066 -39.78626 -37.52402 -35.89028 -34.46860 -33.44980 -31.67325 -31.53132 -30.02418 -29.42811 -26.28205 -23.89504 -23.28197 -22.40131 -22.04681 -20.42808 -19.47670 -17.21766 -17.10819 -16.69962 -16.38293 -16.13713 -15.57332 -15.25045 -14.63360 -14.44727 -13.92865 -13.71744 -13.42408 -13.17178 -12.84112 -12.66211 -12.39044 -12.30146 -12.09394 -11.73643 -11.53986 -11.44579 -11.22696 -11.08888 -11.01879 -10.83861 -10.60718 -10.17571 -10.13779 -9.74717 -9.50771 -9.33544 -8.74455 -8.74010 -7.76331 -6.23367 -4.41518 2.21590 3.01515 3.18725 3.27304 3.30272 3.34306 3.45439 3.81362 4.23397 4.27926 5.02038 5.08756 5.10551 5.15835 5.22072 5.29611 5.38711 5.46798 5.48965 5.71316 5.82649 5.89449 5.90307 5.98981 5.99883 6.08214 6.20183 6.29254 6.35467 6.51849 6.63779 6.89830 7.00705 7.30824 7.69510 7.93661 8.47289 8.53432 8.83827 9.31270 9.36749 10.78969 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.009458 B = 0.007416 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.873809 B = 3774.528335 C = 6296.136053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.456 3.544 5 O -0.514 6.514 6 C -0.103 4.103 7 C 0.227 3.773 8 H 0.039 0.961 9 C -0.550 4.550 10 H 0.069 0.931 11 C 0.082 3.918 12 N -0.862 5.862 13 Si 0.898 3.102 14 H -0.275 1.275 15 H -0.283 1.283 16 H -0.271 1.271 17 O -0.264 6.264 18 C 0.256 3.744 19 C -0.245 4.245 20 C -0.038 4.038 21 C -0.036 4.036 22 C -0.149 4.149 23 O 0.081 5.919 24 N -0.417 5.417 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.141 0.859 31 H 0.104 0.896 32 H 0.267 0.733 33 H 0.163 0.837 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.420 -9.453 1.514 9.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.284 6.284 4 C 0.301 3.699 5 O -0.402 6.402 6 C -0.140 4.140 7 C 0.173 3.827 8 H 0.058 0.942 9 C -0.587 4.587 10 H 0.087 0.913 11 C -0.124 4.124 12 N -0.498 5.498 13 Si 0.725 3.275 14 H -0.201 1.201 15 H -0.209 1.209 16 H -0.196 1.196 17 O -0.169 6.169 18 C 0.058 3.942 19 C -0.267 4.267 20 C -0.102 4.102 21 C -0.074 4.074 22 C -0.207 4.207 23 O 0.024 5.976 24 N -0.151 5.151 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.158 0.842 31 H 0.122 0.878 32 H 0.077 0.923 33 H 0.180 0.820 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.612 -9.253 0.645 9.295 hybrid contribution 0.084 0.773 0.755 1.084 sum -0.529 -8.479 1.401 8.610 Atomic orbital electron populations 1.21776 0.93260 1.02322 1.03334 1.22857 0.94866 0.81807 1.02019 1.86575 1.26096 1.30976 1.84756 1.24900 0.79505 0.94309 0.71221 1.90603 1.60208 1.43625 1.45762 1.21878 0.96642 0.88190 1.07299 1.19762 0.88367 0.92736 0.81802 0.94249 1.21418 1.32385 0.94609 1.10317 0.91322 1.25089 0.93811 0.99158 0.94386 1.69854 1.34544 1.34500 1.10887 0.86491 0.79884 0.83446 0.77680 1.20110 1.20869 1.19582 1.86391 1.30562 1.61524 1.38384 1.21995 0.90135 0.92937 0.89144 1.21700 0.97343 1.06738 1.00912 1.24078 0.98646 1.01428 0.86088 1.19969 0.94914 0.93253 0.99308 1.21778 1.01922 0.94315 1.02676 1.84762 1.36160 1.52368 1.24263 1.74116 1.00323 1.17722 1.22931 0.91701 0.90836 0.91586 0.91897 0.91777 0.84186 0.87807 0.92260 0.81979 0.89820 0.89158 0.92169 0.92143 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.29 37.16 0.38 -1.29 16 2 C 0.06 0.90 6.19 37.16 0.23 1.13 16 3 O -0.37 -6.99 10.22 -39.24 -0.40 -7.40 16 4 C 0.46 10.16 7.84 36.00 0.28 10.44 16 5 O -0.51 -12.61 15.17 -24.06 -0.36 -12.98 16 6 C -0.10 -2.41 5.22 -27.89 -0.15 -2.55 16 7 C 0.23 6.01 1.73 -27.88 -0.05 5.96 16 8 H 0.04 1.08 7.15 -51.93 -0.37 0.71 16 9 C -0.55 -15.13 8.90 -34.44 -0.31 -15.44 16 10 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 11 C 0.08 2.20 5.24 -17.82 -0.09 2.11 16 12 N -0.86 -23.41 10.93 55.43 0.61 -22.80 16 13 Si 0.90 20.71 29.54 -169.99 -5.02 15.68 16 14 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 17 O -0.26 -7.21 8.48 -33.29 -0.28 -7.49 16 18 C 0.26 6.43 7.95 -16.66 -0.13 6.30 16 19 C -0.24 -5.00 11.10 -39.23 -0.44 -5.44 16 20 C -0.04 -0.67 6.73 -35.37 -0.24 -0.91 16 21 C -0.04 -0.42 6.50 -27.88 -0.18 -0.60 16 22 C -0.15 -1.54 9.89 37.16 0.37 -1.17 16 23 O 0.08 1.69 11.19 17.06 0.19 1.88 16 24 N -0.42 -10.26 11.09 30.38 0.34 -9.92 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.94 8.13 -51.93 -0.42 0.51 16 29 H 0.06 0.99 8.13 -51.93 -0.42 0.56 16 30 H 0.14 3.51 6.22 -51.93 -0.32 3.18 16 31 H 0.10 2.22 8.14 -51.93 -0.42 1.79 16 32 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.16 2.91 8.06 -52.49 -0.42 2.49 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 332.61 15.07 5.01 5.01 Total: -1.00 -32.19 332.61 -5.55 -37.74 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.31 Total: 1.75 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -0.32 Total: -1.48 kcal Atomic # 7 Polarization: -33.67 SS G_CDS: 0.94 Total: -32.73 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.86 Total: -25.98 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.19 -5.55 -37.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234650609.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.703 kcal (2) G-P(sol) polarization free energy of solvation -32.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds