Wall clock time and date at job start Tue Mar 31 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38486 * 119.99862 * 2 1 4 4 F 1.35099 * 119.96277 * 0.03049 * 3 2 1 5 5 C 1.38414 * 120.07742 * 179.97438 * 3 2 1 6 6 C 1.38231 * 120.06670 * 359.73734 * 5 3 2 7 7 C 1.38596 * 119.99488 * 0.56581 * 6 5 3 8 8 O 1.35999 * 120.03723 * 179.70473 * 7 6 5 9 9 C 1.42900 * 117.00349 * 2.80074 * 8 7 6 10 10 H 1.08996 * 110.63944 * 33.42673 * 9 8 7 11 11 C 1.55152 * 110.72228 * 156.57156 * 9 8 7 12 12 C 1.54913 * 101.57939 * 154.03821 * 11 9 8 13 13 N 1.47416 * 104.83736 * 322.99439 * 12 11 9 14 14 C 1.36935 * 125.65273 * 204.09036 * 13 12 11 15 15 H 1.07996 * 120.00345 * 163.70526 * 14 13 12 16 16 C 1.38811 * 119.99778 * 343.71275 * 14 13 12 17 17 N 1.31615 * 119.99909 * 331.63143 * 16 14 13 18 18 Si 1.86799 * 120.00169 * 151.90048 * 16 14 13 19 19 H 1.48497 * 109.47435 * 179.72752 * 18 16 14 20 20 H 1.48502 * 109.47236 * 299.72787 * 18 16 14 21 21 H 1.48497 * 109.46873 * 59.72370 * 18 16 14 22 22 C 1.47028 * 108.70443 * 24.35030 * 13 12 11 23 23 C 1.38287 * 119.99887 * 180.02562 * 2 1 3 24 24 F 1.35104 * 120.03466 * 0.02588 * 23 2 1 25 25 H 1.08994 * 109.46989 * 269.97531 * 1 2 3 26 26 H 1.09004 * 109.47338 * 29.97565 * 1 2 3 27 27 H 1.08998 * 109.47078 * 149.97097 * 1 2 3 28 28 H 1.08002 * 119.96734 * 180.02562 * 5 3 2 29 29 H 1.08004 * 120.00582 * 180.27115 * 6 5 3 30 30 H 1.09003 * 111.00515 * 35.96869 * 11 9 8 31 31 H 1.08994 * 111.00815 * 272.11538 * 11 9 8 32 32 H 1.09000 * 110.36561 * 204.15294 * 12 11 9 33 33 H 1.09004 * 110.45775 * 81.87910 * 12 11 9 34 34 H 0.96997 * 120.00072 * 354.99904 * 17 16 14 35 35 H 1.09002 * 109.87916 * 118.12843 * 22 13 12 36 36 H 1.08993 * 109.88641 * 239.30305 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1994 1.1993 0.0000 4 9 1.5231 2.3689 0.0006 5 6 3.5835 1.2012 0.0005 6 6 4.2777 0.0059 0.0066 7 6 3.5877 -1.1961 0.0002 8 8 4.2699 -2.3726 0.0001 9 6 5.6952 -2.2962 0.0688 10 1 6.0056 -1.4412 0.6694 11 6 6.2886 -3.6117 0.6386 12 6 7.7081 -3.6068 0.0182 13 7 7.5271 -3.0487 -1.3341 14 6 8.3551 -3.2631 -2.4035 15 1 8.0148 -3.0387 -3.4036 16 6 9.6319 -3.7691 -2.2020 17 7 10.2617 -3.5346 -1.0704 18 14 10.4593 -4.7764 -3.5400 19 1 11.8101 -5.1912 -3.0836 20 1 9.6423 -5.9825 -3.8283 21 1 10.5831 -3.9564 -4.7718 22 6 6.3136 -2.2185 -1.3431 23 6 2.1984 -1.1976 -0.0005 24 9 1.5235 -2.3680 -0.0016 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3633 -0.8897 -0.5143 28 1 4.1217 2.1376 0.0010 29 1 5.3577 0.0085 0.0114 30 1 5.7175 -4.4765 0.3006 31 1 6.3377 -3.5791 1.7269 32 1 8.1002 -4.6222 -0.0398 33 1 8.3771 -2.9753 0.6028 34 1 9.8649 -2.9489 -0.4068 35 1 6.5722 -1.1866 -1.5804 36 1 5.6062 -2.6039 -2.0773 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234928238.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:32 Heat of formation + Delta-G solvation = -78.587791 kcal Electronic energy + Delta-G solvation = -22036.798518 eV Core-core repulsion = 18351.084214 eV Total energy + Delta-G solvation = -3685.714304 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.08110 -48.94425 -40.24756 -38.12695 -36.46794 -32.87307 -32.56823 -29.93776 -29.15291 -27.80038 -27.07753 -24.46415 -22.93368 -22.44001 -20.43276 -20.26756 -18.43968 -17.79069 -17.76426 -17.44274 -16.34823 -15.83080 -15.50720 -15.25466 -14.97855 -14.54409 -14.26686 -13.81639 -13.76283 -13.42319 -13.40391 -13.23737 -12.94987 -12.60248 -12.42332 -12.13188 -11.82711 -11.56933 -11.37366 -10.95013 -10.72978 -10.62004 -10.39096 -10.20048 -10.03645 -9.60033 -9.05524 -8.49865 -8.18674 -7.05364 -6.19120 -3.23099 0.74158 0.89080 2.99475 3.16260 3.47149 3.51791 3.69227 3.78236 4.19436 4.33520 4.50882 4.52247 4.74185 4.88070 4.99225 5.01343 5.25113 5.28395 5.28702 5.33690 5.50062 5.60860 5.69332 5.78572 5.81489 5.86804 5.91441 6.05686 6.18857 6.28420 6.41112 6.55859 6.81637 6.88099 7.33691 7.69618 8.39968 8.91773 9.72329 10.24315 11.14522 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.031557 B = 0.003696 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.072272 B = 7573.512014 C = 7840.910305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.119 4.119 3 C 0.077 3.923 4 F -0.134 7.134 5 C -0.113 4.113 6 C -0.162 4.162 7 C 0.108 3.892 8 O -0.291 6.291 9 C 0.066 3.934 10 H 0.082 0.918 11 C -0.127 4.127 12 C 0.144 3.856 13 N -0.599 5.599 14 C -0.341 4.341 15 H 0.067 0.933 16 C -0.023 4.023 17 N -0.915 5.915 18 Si 1.066 2.934 19 H -0.284 1.284 20 H -0.293 1.293 21 H -0.292 1.292 22 C 0.118 3.882 23 C 0.088 3.912 24 F -0.123 7.123 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.145 0.855 29 H 0.153 0.847 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.031 0.969 34 H 0.268 0.732 35 H 0.029 0.971 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.269 7.971 5.035 18.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.121 4.121 3 C 0.058 3.942 4 F -0.113 7.113 5 C -0.132 4.132 6 C -0.181 4.181 7 C 0.060 3.940 8 O -0.204 6.204 9 C 0.010 3.990 10 H 0.100 0.900 11 C -0.165 4.165 12 C 0.019 3.981 13 N -0.327 5.327 14 C -0.468 4.468 15 H 0.084 0.916 16 C -0.224 4.224 17 N -0.555 5.555 18 Si 0.895 3.105 19 H -0.210 1.210 20 H -0.220 1.220 21 H -0.219 1.219 22 C -0.008 4.008 23 C 0.068 3.932 24 F -0.102 7.102 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.163 0.837 29 H 0.170 0.830 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.080 0.920 35 H 0.047 0.953 36 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -14.964 6.862 4.557 17.081 hybrid contribution -1.393 1.192 0.299 1.858 sum -16.357 8.054 4.856 18.868 Atomic orbital electron populations 1.20667 0.88807 1.04002 1.03383 1.19630 0.97793 0.90313 1.04320 1.16969 0.89575 0.80529 1.07166 1.91481 1.80244 1.45328 1.94251 1.20986 0.91909 0.99513 1.00786 1.21149 1.01524 0.90331 1.05057 1.19059 0.90200 0.87025 0.97690 1.86243 1.21176 1.25918 1.87055 1.23754 0.75920 1.00444 0.98847 0.89981 1.22977 0.98130 0.95762 0.99643 1.21584 0.91498 0.98839 0.86214 1.44432 1.26357 1.53659 1.08280 1.19742 0.95827 1.45462 0.85780 0.91557 1.25797 0.92633 1.01487 1.02528 1.70813 1.37427 1.37188 1.10101 0.83507 0.76022 0.76508 0.74434 1.20990 1.21980 1.21916 1.21748 0.90689 0.95116 0.93242 1.16356 0.86465 0.81459 1.08947 1.91505 1.79651 1.44945 1.94057 0.90245 0.90431 0.90413 0.83741 0.82999 0.90162 0.90806 0.92135 0.95100 0.92038 0.95282 0.94372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.66 36.00 0.35 -0.69 16 2 C -0.12 -1.41 5.89 -104.51 -0.62 -2.03 16 3 C 0.08 0.90 7.24 -39.43 -0.29 0.61 16 4 F -0.13 -1.52 16.47 2.25 0.04 -1.49 16 5 C -0.11 -1.26 10.02 -39.52 -0.40 -1.65 16 6 C -0.16 -2.06 8.94 -39.45 -0.35 -2.41 16 7 C 0.11 1.58 6.68 -39.19 -0.26 1.32 16 8 O -0.29 -4.91 9.75 -19.74 -0.19 -5.10 16 9 C 0.07 1.14 2.74 -24.89 -0.07 1.07 16 10 H 0.08 1.24 6.14 -51.93 -0.32 0.92 16 11 C -0.13 -2.25 6.81 -24.58 -0.17 -2.42 16 12 C 0.14 3.24 5.29 -2.53 -0.01 3.22 16 13 N -0.60 -15.05 3.30 -170.06 -0.56 -15.62 16 14 C -0.34 -9.58 10.02 -15.06 -0.15 -9.73 16 15 H 0.07 1.87 7.97 -52.49 -0.42 1.45 16 16 C -0.02 -0.64 5.08 -17.43 -0.09 -0.73 16 17 N -0.91 -27.06 12.95 55.49 0.72 -26.34 16 18 Si 1.07 25.07 30.00 -169.99 -5.10 19.97 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.12 2.46 6.87 -3.05 -0.02 2.44 16 23 C 0.09 1.22 7.25 -39.31 -0.28 0.94 16 24 F -0.12 -1.81 16.32 2.25 0.04 -1.77 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.64 7.64 -51.93 -0.40 0.24 16 27 H 0.08 0.69 7.64 -51.93 -0.40 0.29 16 28 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.15 1.86 5.70 -52.48 -0.30 1.56 16 30 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 1.48 7.93 -51.93 -0.41 1.07 16 33 H 0.03 0.72 6.80 -51.93 -0.35 0.37 16 34 H 0.27 7.88 6.00 -40.82 -0.25 7.63 16 35 H 0.03 0.60 7.94 -51.93 -0.41 0.19 16 36 H 0.04 0.83 8.06 -51.93 -0.42 0.41 16 LS Contribution 306.89 15.07 4.62 4.62 Total: -1.00 -30.71 306.89 -6.95 -37.66 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -4.16 Total: -1.90 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -2.36 Total: -10.04 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.16 Total: -41.96 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.19 Total: -5.10 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.07 Total: -3.26 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.10 Total: 19.97 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.71 -6.95 -37.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234928238.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.925 kcal (2) G-P(sol) polarization free energy of solvation -30.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds