Wall clock time and date at job start Tue Mar 31 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38483 * 119.99520 * 2 1 4 4 F 1.35095 * 119.96781 * 0.02562 * 3 2 1 5 5 C 1.38413 * 120.07114 * 180.02562 * 3 2 1 6 6 C 1.38232 * 120.07251 * 359.69632 * 5 3 2 7 7 C 1.38594 * 119.98886 * 0.56175 * 6 5 3 8 8 O 1.36007 * 120.03798 * 179.74553 * 7 6 5 9 9 C 1.42897 * 116.99438 * 354.63481 * 8 7 6 10 10 H 1.09003 * 110.78489 * 321.82547 * 9 8 7 11 11 C 1.55161 * 110.71831 * 198.59174 * 9 8 7 12 12 C 1.55129 * 101.48730 * 205.97211 * 11 9 8 13 13 N 1.47428 * 104.72506 * 37.29204 * 12 11 9 14 14 C 1.36930 * 125.65205 * 155.82183 * 13 12 11 15 15 H 1.08001 * 120.00562 * 179.69300 * 14 13 12 16 16 C 1.38813 * 119.99828 * 359.69076 * 14 13 12 17 17 N 1.31620 * 120.00056 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00200 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47427 * 179.97438 * 18 16 14 20 20 H 1.48493 * 109.47255 * 300.00377 * 18 16 14 21 21 H 1.48501 * 109.47141 * 60.00096 * 18 16 14 22 22 C 1.47023 * 108.70016 * 335.55611 * 13 12 11 23 23 C 1.38294 * 119.99526 * 180.02562 * 2 1 3 24 24 F 1.35100 * 120.03698 * 359.95755 * 23 2 1 25 25 H 1.08994 * 109.46902 * 269.97752 * 1 2 3 26 26 H 1.08999 * 109.46681 * 29.97682 * 1 2 3 27 27 H 1.09000 * 109.46711 * 149.97800 * 1 2 3 28 28 H 1.07997 * 119.96539 * 180.02562 * 5 3 2 29 29 H 1.07996 * 120.00936 * 180.30153 * 6 5 3 30 30 H 1.09007 * 110.99998 * 324.20562 * 11 9 8 31 31 H 1.08999 * 111.00892 * 88.01866 * 11 9 8 32 32 H 1.09005 * 110.49748 * 278.45460 * 12 11 9 33 33 H 1.09001 * 110.34753 * 156.05925 * 12 11 9 34 34 H 0.97001 * 119.99988 * 180.02562 * 17 16 14 35 35 H 1.08998 * 109.88334 * 120.70374 * 22 13 12 36 36 H 1.09000 * 109.88176 * 241.71173 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1994 1.1994 0.0000 4 9 1.5231 2.3689 0.0005 5 6 3.5835 1.2012 -0.0005 6 6 4.2778 0.0059 0.0053 7 6 3.5877 -1.1961 -0.0001 8 8 4.2698 -2.3727 0.0003 9 6 5.6924 -2.2978 -0.1125 10 1 5.9845 -1.5066 -0.8030 11 6 6.2800 -3.6621 -0.5609 12 6 7.7160 -3.5861 0.0210 13 7 7.5597 -2.8997 1.3163 14 6 8.4129 -3.0029 2.3823 15 1 8.2120 -2.4533 3.2901 16 6 9.5361 -3.8140 2.2963 17 7 9.7813 -4.4835 1.1899 18 14 10.6997 -3.9555 3.7507 19 1 11.8123 -4.8768 3.4068 20 1 11.2492 -2.6151 4.0772 21 1 9.9622 -4.4873 4.9248 22 6 6.3393 -2.0810 1.2717 23 6 2.1984 -1.1977 -0.0005 24 9 1.5236 -2.3681 -0.0002 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 4.1217 2.1375 -0.0001 29 1 5.3577 0.0085 0.0098 30 1 5.7215 -4.4903 -0.1246 31 1 6.3036 -3.7391 -1.6479 32 1 8.3649 -3.0092 -0.6381 33 1 8.1186 -4.5882 0.1688 34 1 10.5660 -5.0506 1.1300 35 1 5.6517 -2.3976 2.0559 36 1 6.5934 -1.0293 1.4041 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234928240.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:39 Heat of formation + Delta-G solvation = -74.573293 kcal Electronic energy + Delta-G solvation = -22029.435567 eV Core-core repulsion = 18343.895345 eV Total energy + Delta-G solvation = -3685.540222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.03465 -48.88457 -40.15297 -37.98939 -36.22738 -32.79788 -32.39180 -29.93636 -29.08076 -27.71784 -26.94006 -24.65125 -22.86632 -22.28993 -20.36916 -20.13661 -18.32792 -17.69123 -17.59218 -16.93451 -16.28789 -15.75902 -15.45984 -15.19974 -14.80952 -14.59232 -14.46048 -13.92520 -13.64580 -13.36650 -13.30361 -12.92282 -12.63227 -12.51155 -12.10273 -11.93207 -11.74850 -11.46898 -11.29708 -11.05741 -10.83008 -10.54168 -10.31115 -10.13524 -9.91726 -9.68550 -8.99549 -8.74215 -8.12491 -6.96098 -5.74304 -3.17285 0.80212 0.95343 3.10798 3.22659 3.36902 3.41231 3.42523 3.84574 4.25722 4.39492 4.42281 4.57064 4.83932 4.94433 5.14434 5.18149 5.32850 5.37108 5.43012 5.47152 5.61139 5.66543 5.75022 5.86194 5.89949 5.93791 6.16443 6.30078 6.37297 6.42024 6.49450 6.64426 7.34635 7.43459 7.52380 7.73734 8.24748 9.11703 9.71950 10.34322 11.29857 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.030407 B = 0.003750 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.617088 B = 7464.834941 C = 7862.262970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.120 4.120 3 C 0.076 3.924 4 F -0.135 7.135 5 C -0.114 4.114 6 C -0.161 4.161 7 C 0.109 3.891 8 O -0.292 6.292 9 C 0.066 3.934 10 H 0.080 0.920 11 C -0.134 4.134 12 C 0.152 3.848 13 N -0.600 5.600 14 C -0.227 4.227 15 H 0.078 0.922 16 C -0.008 4.008 17 N -0.923 5.923 18 Si 0.918 3.082 19 H -0.289 1.289 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.117 3.883 23 C 0.087 3.913 24 F -0.123 7.123 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.144 0.856 29 H 0.153 0.847 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.018 0.982 33 H 0.116 0.884 34 H 0.255 0.745 35 H 0.036 0.964 36 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.769 9.280 -5.108 18.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.121 4.121 3 C 0.056 3.944 4 F -0.114 7.114 5 C -0.133 4.133 6 C -0.180 4.180 7 C 0.061 3.939 8 O -0.205 6.205 9 C 0.010 3.990 10 H 0.098 0.902 11 C -0.173 4.173 12 C 0.027 3.973 13 N -0.328 5.328 14 C -0.355 4.355 15 H 0.096 0.904 16 C -0.204 4.204 17 N -0.571 5.571 18 Si 0.748 3.252 19 H -0.215 1.215 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.010 4.010 23 C 0.067 3.933 24 F -0.102 7.102 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.162 0.838 29 H 0.171 0.829 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.036 0.964 33 H 0.133 0.867 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -14.681 8.951 -5.033 17.916 hybrid contribution 0.601 0.207 0.730 0.968 sum -14.080 9.158 -4.304 17.339 Atomic orbital electron populations 1.20662 0.88884 1.03867 1.03418 1.19623 0.97742 0.90343 1.04434 1.16962 0.89586 0.80498 1.07330 1.91475 1.80267 1.45363 1.94281 1.20984 0.91887 0.99519 1.00898 1.21193 1.01562 0.90287 1.04910 1.19082 0.90182 0.87171 0.97477 1.86270 1.21665 1.25856 1.86688 1.23811 0.75584 1.01022 0.98539 0.90222 1.23254 0.99662 0.94228 1.00129 1.22080 0.88734 1.01612 0.84843 1.44364 1.23842 1.51589 1.12970 1.19037 1.01427 1.23056 0.91975 0.90365 1.24799 0.98443 0.99428 0.97720 1.69730 1.28732 1.33151 1.25487 0.86105 0.80198 0.77509 0.81400 1.21456 1.21119 1.21038 1.21752 0.90330 0.95094 0.93796 1.16370 0.86536 0.81424 1.08995 1.91502 1.79658 1.44969 1.94063 0.90237 0.90508 0.90473 0.83810 0.82940 0.90594 0.91310 0.96401 0.86668 0.93467 0.94583 0.95490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.66 36.01 0.35 -0.71 16 2 C -0.12 -1.45 5.89 -104.51 -0.62 -2.06 16 3 C 0.08 0.89 7.24 -39.43 -0.29 0.61 16 4 F -0.14 -1.56 16.47 2.25 0.04 -1.52 16 5 C -0.11 -1.28 10.02 -39.52 -0.40 -1.68 16 6 C -0.16 -2.08 8.78 -39.45 -0.35 -2.43 16 7 C 0.11 1.63 6.63 -39.19 -0.26 1.37 16 8 O -0.29 -5.05 9.74 -19.76 -0.19 -5.25 16 9 C 0.07 1.17 2.76 -24.89 -0.07 1.10 16 10 H 0.08 1.24 6.59 -51.93 -0.34 0.90 16 11 C -0.13 -2.52 6.82 -24.46 -0.17 -2.69 16 12 C 0.15 3.57 5.91 -2.41 -0.01 3.55 16 13 N -0.60 -15.13 3.39 -169.93 -0.58 -15.70 16 14 C -0.23 -6.23 10.27 -15.06 -0.15 -6.39 16 15 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 16 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 17 N -0.92 -26.21 10.08 55.49 0.56 -25.65 16 18 Si 0.92 21.67 29.55 -169.99 -5.02 16.65 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 22 C 0.12 2.41 6.51 -3.06 -0.02 2.39 16 23 C 0.09 1.23 7.25 -39.30 -0.28 0.95 16 24 F -0.12 -1.85 16.32 2.25 0.04 -1.82 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.08 0.64 7.64 -51.93 -0.40 0.24 16 27 H 0.08 0.69 7.64 -51.93 -0.40 0.29 16 28 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.15 1.91 5.32 -52.49 -0.28 1.63 16 30 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.12 3.04 5.86 -51.93 -0.30 2.74 16 34 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 36 H 0.03 0.53 7.44 -51.93 -0.39 0.15 16 LS Contribution 305.40 15.07 4.60 4.60 Total: -1.00 -29.29 305.40 -7.10 -36.39 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -4.18 Total: -1.40 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -2.36 Total: -6.31 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: -0.02 Total: -41.35 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.19 Total: -5.25 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.07 Total: -3.34 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.29 -7.10 -36.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234928240.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.181 kcal (2) G-P(sol) polarization free energy of solvation -29.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds