Wall clock time and date at job start Tue Mar 31 2020 06:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38483 * 119.99820 * 2 1 4 4 F 1.35097 * 119.96340 * 0.02562 * 3 2 1 5 5 C 1.38410 * 120.07702 * 179.72537 * 3 2 1 6 6 C 1.38235 * 120.06996 * 0.28002 * 5 3 2 7 7 C 1.38591 * 119.99134 * 0.02562 * 6 5 3 8 8 O 1.36007 * 120.03765 * 180.02562 * 7 6 5 9 9 C 1.42905 * 116.99736 * 6.20443 * 8 7 6 10 10 C 1.53935 * 113.73134 * 255.85133 * 9 8 7 11 11 N 1.48188 * 86.09774 * 221.95744 * 10 9 8 12 12 C 1.46903 * 111.07002 * 137.51841 * 11 10 9 13 13 C 1.50707 * 109.46895 * 70.56587 * 12 11 10 14 14 H 1.07997 * 119.99973 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99831 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00283 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00189 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47514 * 89.99882 * 17 15 13 19 19 H 1.48509 * 109.47003 * 210.00225 * 17 15 13 20 20 H 1.48498 * 109.46826 * 329.99766 * 17 15 13 21 21 C 1.47955 * 90.80252 * 24.60159 * 11 10 9 22 22 C 1.38298 * 120.00074 * 180.28126 * 2 1 3 23 23 F 1.35106 * 120.03258 * 0.02562 * 22 2 1 24 24 H 1.08991 * 109.47207 * 89.99842 * 1 2 3 25 25 H 1.09002 * 109.46608 * 209.99576 * 1 2 3 26 26 H 1.09000 * 109.46588 * 329.98857 * 1 2 3 27 27 H 1.08003 * 119.97049 * 180.29843 * 5 3 2 28 28 H 1.08003 * 120.00396 * 180.02562 * 6 5 3 29 29 H 1.09002 * 112.93793 * 27.41362 * 9 8 7 30 30 H 1.09007 * 113.75746 * 336.23443 * 10 9 8 31 31 H 1.09003 * 113.76064 * 107.60240 * 10 9 8 32 32 H 1.08997 * 109.47037 * 190.56350 * 12 11 10 33 33 H 1.09001 * 109.47549 * 310.56849 * 12 11 10 34 34 H 0.96990 * 120.00506 * 179.97438 * 16 15 13 35 35 H 1.09001 * 113.75722 * 221.08950 * 21 11 10 36 36 H 1.09000 * 113.76181 * 89.71731 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1994 1.1993 0.0000 4 9 1.5231 2.3688 0.0005 5 6 3.5835 1.2012 0.0057 6 6 4.2777 0.0059 0.0056 7 6 3.5878 -1.1960 -0.0007 8 8 4.2699 -2.3727 -0.0003 9 6 5.6897 -2.2993 0.1445 10 6 6.4592 -2.5335 -1.1680 11 7 7.3910 -3.3524 -0.3574 12 6 7.7585 -4.5877 -1.0622 13 6 8.6525 -4.2536 -2.2286 14 1 8.9205 -3.2263 -2.4266 15 6 9.1275 -5.2593 -3.0434 16 7 9.9073 -4.9677 -4.0615 17 14 8.6623 -7.0360 -2.7021 18 1 7.4149 -7.3707 -3.4349 19 1 9.7579 -7.9303 -3.1553 20 1 8.4446 -7.2194 -1.2447 21 6 6.3301 -3.6078 0.6419 22 6 2.1985 -1.1977 -0.0059 23 9 1.5236 -2.3681 -0.0121 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3632 -0.8901 0.5138 26 1 -0.3632 0.8899 0.5140 27 1 4.1217 2.1376 0.0106 28 1 5.3578 0.0086 0.0105 29 1 6.0158 -1.4152 0.6924 30 1 5.9008 -3.1069 -1.9081 31 1 6.9104 -1.6307 -1.5797 32 1 8.2864 -5.2527 -0.3787 33 1 6.8569 -5.0810 -1.4253 34 1 10.2417 -5.6752 -4.6345 35 1 6.6785 -3.5616 1.6737 36 1 5.7340 -4.4959 0.4323 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234928254.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:12 Heat of formation + Delta-G solvation = -82.123040 kcal Electronic energy + Delta-G solvation = -21645.052365 eV Core-core repulsion = 17959.184761 eV Total energy + Delta-G solvation = -3685.867604 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.99256 -49.95910 -41.67419 -40.04441 -38.05191 -34.96141 -33.67480 -31.89889 -30.48529 -28.28696 -27.40175 -26.95556 -24.00040 -23.86033 -22.38212 -20.89648 -19.48590 -19.06485 -18.87146 -18.58088 -17.37726 -17.02011 -16.68271 -16.55347 -16.35172 -16.08783 -15.91205 -15.47539 -15.01293 -14.72388 -14.60226 -14.14961 -14.12598 -13.99518 -13.77216 -13.60898 -13.32633 -12.98048 -12.89846 -12.66440 -12.49495 -12.20245 -11.83463 -11.58056 -11.51666 -11.34729 -10.84723 -9.95116 -9.78331 -9.21420 -8.33374 -6.38267 -0.16122 -0.06978 1.32694 1.33923 1.44708 1.85517 2.23255 2.30615 2.84118 2.98946 3.07241 3.26879 3.29224 3.49315 3.70455 3.74165 3.92856 4.00820 4.19844 4.41083 4.56147 4.58798 4.59578 4.61343 4.74348 4.75202 4.79861 4.84069 4.94096 4.96639 4.97016 5.05189 5.33237 5.54697 5.65133 5.88005 6.19110 6.41345 6.67518 7.25810 8.83049 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.030068 B = 0.003478 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.987731 B = 8047.948058 C = 8377.541749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.118 4.118 3 C 0.076 3.924 4 F -0.132 7.132 5 C -0.103 4.103 6 C -0.157 4.157 7 C 0.084 3.916 8 O -0.311 6.311 9 C 0.065 3.935 10 C -0.001 4.001 11 N -0.480 5.480 12 C 0.141 3.859 13 C -0.523 4.523 14 H 0.039 0.961 15 C 0.010 3.990 16 N -0.945 5.945 17 Si 0.946 3.054 18 H -0.269 1.269 19 H -0.279 1.279 20 H -0.247 1.247 21 C 0.006 3.994 22 C 0.068 3.932 23 F -0.135 7.135 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.175 0.825 28 H 0.168 0.832 29 H 0.139 0.861 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.036 0.964 33 H -0.004 1.004 34 H 0.268 0.732 35 H 0.122 0.878 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.075 11.629 11.822 24.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.120 4.120 3 C 0.057 3.943 4 F -0.110 7.110 5 C -0.121 4.121 6 C -0.176 4.176 7 C 0.038 3.962 8 O -0.224 6.224 9 C 0.009 3.991 10 C -0.130 4.130 11 N -0.204 5.204 12 C 0.013 3.987 13 C -0.561 4.561 14 H 0.057 0.943 15 C -0.188 4.188 16 N -0.585 5.585 17 Si 0.769 3.231 18 H -0.194 1.194 19 H -0.204 1.204 20 H -0.171 1.171 21 C -0.123 4.123 22 C 0.048 3.952 23 F -0.114 7.114 24 H 0.107 0.893 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.192 0.808 28 H 0.185 0.815 29 H 0.156 0.844 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.054 0.946 33 H 0.013 0.987 34 H 0.077 0.923 35 H 0.140 0.860 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.468 11.598 11.866 24.092 hybrid contribution -0.503 -1.296 -0.854 1.632 sum -17.971 10.302 11.012 23.459 Atomic orbital electron populations 1.20766 0.87353 1.04682 1.04270 1.19879 0.99022 0.89884 1.03241 1.17112 0.90092 0.80416 1.06692 1.91497 1.80292 1.45085 1.94164 1.21301 0.91632 1.00320 0.98891 1.21275 1.02143 0.89708 1.04465 1.19289 0.90305 0.87174 0.99474 1.86259 1.21606 1.27628 1.86929 1.24806 0.75737 1.01315 0.97216 1.24333 0.93155 0.99563 0.95916 1.68458 1.26813 1.15555 1.09600 1.20458 0.94885 0.89778 0.93600 1.21173 1.29619 0.94530 1.10775 0.94288 1.25851 0.94503 1.04022 0.94393 1.70035 1.35457 1.34883 1.18130 0.85733 0.78314 0.78977 0.80080 1.19431 1.20439 1.17098 1.24315 0.91678 0.96183 1.00093 1.16647 0.86731 0.81684 1.10166 1.91473 1.79916 1.45708 1.94313 0.89305 0.90240 0.89165 0.80799 0.81460 0.84396 0.92351 0.89000 0.94622 0.98659 0.92285 0.86017 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 9.65 71.24 0.69 -1.09 16 2 C -0.12 -2.41 5.89 -19.79 -0.12 -2.53 16 3 C 0.08 1.43 7.24 22.37 0.16 1.59 16 4 F -0.13 -2.42 16.47 44.97 0.74 -1.68 16 5 C -0.10 -1.68 10.02 22.31 0.22 -1.46 16 6 C -0.16 -3.02 9.00 22.35 0.20 -2.82 16 7 C 0.08 2.10 6.68 22.52 0.15 2.25 16 8 O -0.31 -9.02 10.02 -93.62 -0.94 -9.96 16 9 C 0.07 1.78 3.78 31.24 0.12 1.89 16 10 C 0.00 -0.02 7.32 86.37 0.63 0.61 16 11 N -0.48 -18.94 6.25 -915.74 -5.72 -24.66 16 12 C 0.14 6.65 3.65 85.56 0.31 6.96 16 13 C -0.52 -30.05 9.40 25.60 0.24 -29.81 16 14 H 0.04 2.49 8.04 -2.91 -0.02 2.46 16 15 C 0.01 0.59 5.47 84.65 0.46 1.06 16 16 N -0.94 -58.79 13.96 21.45 0.30 -58.49 16 17 Si 0.95 43.79 27.47 68.60 1.88 45.68 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 21 C 0.01 0.17 7.81 86.41 0.67 0.85 16 22 C 0.07 1.68 7.25 22.45 0.16 1.84 16 23 F -0.14 -3.75 16.32 44.97 0.73 -3.02 16 24 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.08 1.20 7.65 -2.39 -0.02 1.19 16 26 H 0.09 1.16 7.64 -2.39 -0.02 1.14 16 27 H 0.17 1.82 8.06 -2.91 -0.02 1.79 16 28 H 0.17 2.66 5.97 -2.91 -0.02 2.64 16 29 H 0.14 2.87 6.11 -2.39 -0.01 2.86 16 30 H 0.06 2.32 7.79 -2.38 -0.02 2.30 16 31 H 0.09 3.14 8.14 -2.39 -0.02 3.13 16 32 H 0.04 1.67 7.20 -2.39 -0.02 1.66 16 33 H 0.00 -0.20 7.12 -2.39 -0.02 -0.22 16 34 H 0.27 15.53 8.31 -92.72 -0.77 14.76 16 35 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 36 H 0.07 2.23 7.79 -2.39 -0.02 2.21 16 Total: -1.00 -67.89 310.51 1.96 -65.94 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 1.05 Total: 6.84 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 3.91 Total: -20.65 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -5.43 Total: -83.15 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.94 Total: -9.96 kcal Atomic # 9 Polarization: -6.17 SS G_CDS: 1.47 Total: -4.70 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.68 kcal Total: -67.89 1.96 -65.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234928254.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.185 kcal (2) G-P(sol) polarization free energy of solvation -67.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds