Wall clock time and date at job start Tue Mar 31 2020 05:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30859 * 1 3 3 Si 1.86807 * 119.99778 * 2 1 4 4 H 1.48494 * 109.47182 * 275.41619 * 3 2 1 5 5 H 1.48493 * 109.47157 * 35.42194 * 3 2 1 6 6 H 1.48506 * 109.46731 * 155.42095 * 3 2 1 7 7 C 1.39898 * 120.00193 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99851 * 341.71133 * 7 2 1 9 9 C 1.41343 * 120.00211 * 161.72281 * 7 2 1 10 10 C 1.40848 * 120.15531 * 330.16126 * 9 7 2 11 11 C 1.37544 * 120.02544 * 180.02562 * 10 9 7 12 12 C 1.38759 * 120.34953 * 0.02562 * 11 10 9 13 13 F 1.35106 * 119.84507 * 179.97438 * 12 11 10 14 14 C 1.39985 * 120.31520 * 359.97438 * 12 11 10 15 15 C 1.48385 * 120.02100 * 179.97438 * 14 12 11 16 16 C 1.39358 * 120.13010 * 130.00084 * 15 14 12 17 17 C 1.37978 * 119.88082 * 179.70168 * 16 15 14 18 18 C 1.38315 * 120.18929 * 0.25074 * 17 16 15 19 19 C 1.38558 * 120.16073 * 0.02591 * 18 17 16 20 20 C 1.37969 * 120.09016 * 359.96470 * 19 18 17 21 21 C 1.51199 * 108.24278 * 179.97438 * 19 18 17 22 22 N 1.48048 * 105.67336 * 17.53488 * 21 19 18 23 23 C 1.48043 * 103.89714 * 332.33483 * 22 21 19 24 24 C 1.38677 * 119.96635 * 0.23320 * 14 12 11 25 25 H 0.96998 * 120.00037 * 359.97438 * 1 2 3 26 26 H 1.08008 * 119.98419 * 359.97438 * 10 9 7 27 27 H 1.08005 * 119.82915 * 179.97438 * 11 10 9 28 28 H 1.08002 * 120.05910 * 359.97236 * 16 15 14 29 29 H 1.08004 * 119.91053 * 180.27470 * 17 16 15 30 30 H 1.07996 * 120.03579 * 179.97438 * 20 19 18 31 31 H 1.09006 * 110.20907 * 136.58360 * 21 19 18 32 32 H 1.09007 * 110.20926 * 258.40128 * 21 19 18 33 33 H 1.00908 * 110.99547 * 212.96911 * 22 21 19 34 34 H 1.09001 * 110.20448 * 268.60824 * 23 22 21 35 35 H 1.08997 * 110.20233 * 146.71815 * 23 22 21 36 36 H 1.08006 * 120.17371 * 179.72435 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.3756 2.1126 -1.3938 5 1 1.5020 2.6169 0.8114 6 1 3.5927 1.4099 0.5824 7 6 2.0081 -1.2115 -0.0005 8 1 1.5091 -2.1233 0.2925 9 6 3.3681 -1.2422 -0.3844 10 6 3.8612 -0.3092 -1.3172 11 6 5.1849 -0.3419 -1.6893 12 6 6.0414 -1.2914 -1.1506 13 9 7.3397 -1.3146 -1.5237 14 6 5.5667 -2.2256 -0.2224 15 6 6.4882 -3.2385 0.3491 16 6 6.5497 -3.4292 1.7282 17 6 7.4039 -4.3768 2.2537 18 6 8.2027 -5.1340 1.4160 19 6 8.1496 -4.9444 0.0445 20 6 7.2986 -3.9995 -0.4908 21 6 9.1230 -5.9026 -0.6039 22 7 9.4136 -6.9315 0.4203 23 6 9.2128 -6.2220 1.7040 24 6 4.2335 -2.2073 0.1587 25 1 -0.4850 0.8400 0.0004 26 1 3.1994 0.4316 -1.7411 27 1 5.5596 0.3748 -2.4052 28 1 5.9267 -2.8393 2.3842 29 1 7.4488 -4.5281 3.3221 30 1 7.2581 -3.8522 -1.5599 31 1 8.6699 -6.3630 -1.4820 32 1 10.0373 -5.3789 -0.8833 33 1 10.3617 -7.2669 0.3370 34 1 10.1516 -5.7841 2.0430 35 1 8.8232 -6.9078 2.4562 36 1 3.8626 -2.9293 0.8713 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242676224.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:31 Heat of formation + Delta-G solvation = 2.059137 kcal Electronic energy + Delta-G solvation = -20884.378325 eV Core-core repulsion = 17632.930358 eV Total energy + Delta-G solvation = -3251.447966 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.107 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -47.72484 -40.09717 -37.90890 -36.16173 -33.68413 -31.82222 -30.91647 -30.20012 -28.63632 -27.22824 -24.98234 -23.62822 -22.27952 -21.31914 -20.67492 -20.07325 -17.53511 -16.75261 -16.65968 -15.63085 -15.42968 -15.27055 -15.00201 -14.71906 -14.45492 -13.68365 -13.56865 -13.42663 -13.12876 -12.92592 -12.72193 -12.42080 -12.24294 -12.15162 -12.00180 -11.72218 -11.41008 -10.96111 -10.84906 -10.52339 -10.34840 -10.25677 -9.73391 -9.31898 -9.15882 -8.67170 -8.32279 -7.80807 -7.45243 -7.09506 -4.61932 1.32543 1.59605 2.33211 2.40378 3.00568 3.11728 3.21523 3.85503 3.91187 4.10356 4.26426 4.49155 4.55627 5.06524 5.17668 5.19828 5.28850 5.32038 5.43282 5.49120 5.59651 5.69787 5.78856 5.84967 6.07870 6.21346 6.27350 6.32899 6.45763 6.53014 6.58643 6.75735 6.84967 6.93051 7.04243 7.12950 7.18654 7.30632 7.38276 7.63615 7.88471 8.17790 8.43282 8.61836 9.92201 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.030019 B = 0.004228 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.533613 B = 6620.527769 C = 7093.377637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.084 3.916 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.243 1.243 7 C -0.439 4.439 8 H 0.094 0.906 9 C 0.084 3.916 10 C -0.214 4.214 11 C -0.102 4.102 12 C -0.032 4.032 13 F -0.164 7.164 14 C -0.049 4.049 15 C -0.018 4.018 16 C -0.104 4.104 17 C -0.100 4.100 18 C -0.119 4.119 19 C -0.109 4.109 20 C -0.081 4.081 21 C 0.082 3.918 22 N -0.660 5.660 23 C 0.084 3.916 24 C -0.166 4.166 25 H 0.288 0.712 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.130 0.870 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.342 0.658 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.527 -6.041 2.031 14.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.136 4.136 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.215 1.215 6 H -0.166 1.166 7 C -0.467 4.467 8 H 0.112 0.888 9 C 0.081 3.919 10 C -0.234 4.234 11 C -0.121 4.121 12 C -0.052 4.052 13 F -0.144 7.144 14 C -0.050 4.050 15 C -0.018 4.018 16 C -0.122 4.122 17 C -0.119 4.119 18 C -0.120 4.120 19 C -0.109 4.109 20 C -0.099 4.099 21 C -0.047 4.047 22 N -0.288 5.288 23 C -0.045 4.045 24 C -0.186 4.186 25 H 0.098 0.902 26 H 0.128 0.872 27 H 0.126 0.874 28 H 0.148 0.852 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.158 0.842 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 12.641 -6.356 2.009 14.290 hybrid contribution 1.113 1.463 -0.092 1.840 sum 13.753 -4.892 1.917 14.723 Atomic orbital electron populations 1.69698 1.08112 1.30558 1.33952 1.26177 0.94752 1.01810 0.90871 0.86346 0.81421 0.79717 0.79079 1.19412 1.21494 1.16593 1.19487 0.92865 0.96319 1.38041 0.88758 1.17679 0.93234 0.90921 0.90058 1.20947 0.94703 1.04567 1.03137 1.20521 0.93868 0.97661 1.00035 1.17146 0.78414 1.03605 1.06031 1.91309 1.35178 1.96725 1.91164 1.18390 0.93888 0.94962 0.97796 1.18794 0.95130 0.94934 0.92905 1.21209 0.98595 0.97949 0.94429 1.20328 0.96337 0.96155 0.99076 1.20477 0.98846 0.98315 0.94321 1.20343 0.98299 0.97619 0.94649 1.20515 0.94843 0.94665 0.99902 1.21359 0.96756 0.90788 0.95756 1.63489 1.30890 1.32335 1.02117 1.21345 0.96435 0.93486 0.93251 1.20992 0.90667 1.03421 1.03488 0.90177 0.87249 0.87352 0.85205 0.86151 0.85974 0.89289 0.92612 0.84231 0.92806 0.89456 0.86886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.37 13.93 55.54 0.77 -19.59 16 2 C 0.08 2.09 5.40 -17.35 -0.09 2.00 16 3 Si 0.91 19.74 24.51 -169.99 -4.17 15.57 16 4 H -0.27 -5.64 6.70 56.52 0.38 -5.26 16 5 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.24 -5.42 6.87 56.52 0.39 -5.03 16 7 C -0.44 -11.26 9.56 -37.78 -0.36 -11.62 16 8 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 9 C 0.08 2.03 5.10 -106.86 -0.55 1.49 16 10 C -0.21 -4.94 7.16 -38.85 -0.28 -5.22 16 11 C -0.10 -2.20 9.99 -39.64 -0.40 -2.59 16 12 C -0.03 -0.70 7.18 -38.73 -0.28 -0.97 16 13 F -0.16 -3.43 15.85 2.25 0.04 -3.39 16 14 C -0.05 -1.05 5.48 -104.90 -0.57 -1.62 16 15 C -0.02 -0.33 5.31 -104.90 -0.56 -0.89 16 16 C -0.10 -1.72 9.51 -39.26 -0.37 -2.09 16 17 C -0.10 -1.44 10.03 -39.65 -0.40 -1.84 16 18 C -0.12 -1.69 6.26 -104.22 -0.65 -2.34 16 19 C -0.11 -1.64 6.25 -104.36 -0.65 -2.30 16 20 C -0.08 -1.40 8.85 -39.28 -0.35 -1.74 16 21 C 0.08 0.98 7.45 -4.10 -0.03 0.95 16 22 N -0.66 -7.17 7.72 -114.01 -0.88 -8.05 16 23 C 0.08 0.92 7.45 -4.09 -0.03 0.89 16 24 C -0.17 -3.71 9.24 -38.55 -0.36 -4.07 16 25 H 0.29 6.61 8.30 -40.82 -0.34 6.27 16 26 H 0.11 2.48 4.72 -52.48 -0.25 2.23 16 27 H 0.11 2.06 8.06 -52.48 -0.42 1.63 16 28 H 0.13 2.03 8.04 -52.49 -0.42 1.61 16 29 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 30 H 0.12 2.09 7.75 -52.49 -0.41 1.68 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 33 H 0.34 2.72 8.92 -39.29 -0.35 2.37 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.11 2.38 8.04 -52.48 -0.42 1.96 16 LS Contribution 305.41 15.07 4.60 4.60 Total: -1.00 -27.08 305.41 -9.54 -36.62 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -3.98 Total: 6.21 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: -5.92 Total: -31.96 kcal Atomic # 7 Polarization: -27.54 SS G_CDS: -0.11 Total: -27.64 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.04 Total: -3.39 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.17 Total: 15.57 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.08 -9.54 -36.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242676224.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.675 kcal (2) G-P(sol) polarization free energy of solvation -27.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds