Wall clock time and date at job start Tue Mar 31 2020 05:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30797 * 1 3 3 Si 1.86805 * 119.99786 * 2 1 4 4 H 1.48502 * 109.47006 * 239.99862 * 3 2 1 5 5 H 1.48491 * 109.47283 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46762 * 120.00269 * 3 2 1 7 7 C 1.39998 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00693 * 197.96467 * 7 2 1 9 9 C 1.41040 * 119.99793 * 17.96827 * 7 2 1 10 10 C 1.40974 * 120.10345 * 24.70733 * 9 7 2 11 11 C 1.36235 * 119.92612 * 179.97438 * 10 9 7 12 12 C 1.39936 * 120.14044 * 0.02593 * 11 10 9 13 13 C 1.47961 * 119.88856 * 179.97438 * 12 11 10 14 14 C 1.39645 * 120.14840 * 129.97835 * 13 12 11 15 15 C 1.37903 * 119.85059 * 179.97438 * 14 13 12 16 16 C 1.38388 * 120.22163 * 359.97438 * 15 14 13 17 17 C 1.38626 * 120.20190 * 0.02562 * 16 15 14 18 18 C 1.37895 * 120.11604 * 359.72686 * 17 16 15 19 19 C 1.51208 * 108.23428 * 179.97438 * 17 16 15 20 20 N 1.48046 * 105.67043 * 17.54449 * 19 17 16 21 21 C 1.48036 * 103.91316 * 332.31593 * 20 19 17 22 22 C 1.40135 * 120.21206 * 359.97438 * 12 11 10 23 23 F 1.35103 * 119.96551 * 179.72540 * 22 12 11 24 24 C 1.36492 * 120.07290 * 0.02562 * 22 12 11 25 25 H 0.96999 * 120.00192 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.03400 * 359.95975 * 10 9 7 27 27 H 1.07997 * 119.92655 * 179.97438 * 11 10 9 28 28 H 1.07999 * 120.07336 * 359.97438 * 14 13 12 29 29 H 1.07996 * 119.88348 * 179.97438 * 15 14 13 30 30 H 1.08002 * 120.04376 * 180.27743 * 18 17 16 31 31 H 1.09005 * 110.20387 * 136.59183 * 19 17 16 32 32 H 1.08995 * 110.20943 * 258.41127 * 19 17 16 33 33 H 1.00902 * 110.99255 * 212.94055 * 20 19 17 34 34 H 1.08999 * 110.20596 * 268.63528 * 21 20 19 35 35 H 1.08997 * 110.20610 * 146.73939 * 21 20 19 36 36 H 1.08001 * 120.07082 * 179.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 3.0957 1.6965 -1.2125 5 1 1.2770 2.7465 0.0006 6 1 3.0957 1.6964 1.2126 7 6 2.0080 -1.2124 0.0005 8 1 3.0485 -1.2351 0.2890 9 6 1.3545 -2.4042 -0.3757 10 6 0.2269 -2.3559 -1.2205 11 6 -0.4014 -3.5094 -1.5821 12 6 0.0700 -4.7420 -1.1164 13 6 -0.6169 -5.9913 -1.5121 14 6 0.1172 -7.0639 -2.0226 15 6 -0.5292 -8.2256 -2.3890 16 6 -1.9022 -8.3317 -2.2520 17 6 -2.6366 -7.2704 -1.7460 18 6 -2.0010 -6.1055 -1.3713 19 6 -4.0931 -7.6753 -1.7145 20 7 -4.1001 -9.1519 -1.8215 21 6 -2.8582 -9.4607 -2.5657 22 6 1.1903 -4.7968 -0.2764 23 9 1.6378 -5.9890 0.1748 24 6 1.8264 -3.6465 0.0913 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1387 -1.4055 -1.5803 27 1 -1.2654 -3.4724 -2.2289 28 1 1.1889 -6.9838 -2.1301 29 1 0.0380 -9.0553 -2.7842 30 1 -2.5737 -5.2810 -0.9730 31 1 -4.5503 -7.3637 -0.7753 32 1 -4.6251 -7.2331 -2.5567 33 1 -4.9130 -9.4740 -2.3250 34 1 -3.0600 -9.4967 -3.6363 35 1 -2.4432 -10.4103 -2.2280 36 1 2.6896 -3.6887 0.7390 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242676923.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:07 Heat of formation + Delta-G solvation = -1.205987 kcal Electronic energy + Delta-G solvation = -20729.823091 eV Core-core repulsion = 17478.233538 eV Total energy + Delta-G solvation = -3251.589553 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.107 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.81426 -39.90447 -37.67604 -36.01568 -33.84348 -31.51950 -30.63413 -29.37277 -28.63784 -27.33148 -25.34707 -23.19519 -21.57768 -21.35536 -20.75244 -19.79960 -17.79678 -16.68425 -15.80845 -15.50161 -15.27893 -15.13735 -15.11056 -14.67255 -14.36474 -13.62766 -13.48396 -13.39021 -13.04744 -12.75559 -12.49337 -12.19257 -12.07017 -11.95299 -11.80822 -11.36185 -11.25643 -11.08792 -10.72624 -10.60763 -10.33576 -10.18106 -9.65882 -9.43261 -9.01063 -8.47070 -8.12711 -7.65045 -7.24862 -7.04801 -4.61900 1.55757 1.76999 2.55802 2.79311 2.93874 2.95582 3.03870 3.73477 4.07996 4.20410 4.37794 4.65273 4.69112 5.25928 5.32781 5.37332 5.40054 5.53924 5.56066 5.62362 5.71700 5.91298 5.99698 6.10282 6.29772 6.39988 6.42815 6.65891 6.73374 6.79825 6.83143 6.92189 6.94724 7.10921 7.15052 7.33645 7.40805 7.54634 7.79207 7.82095 7.98913 8.35798 8.58329 8.66728 9.88077 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.032816 B = 0.003762 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.038330 B = 7441.085195 C = 8038.091463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.075 3.925 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.444 4.444 8 H 0.085 0.915 9 C 0.136 3.864 10 C -0.176 4.176 11 C -0.055 4.055 12 C -0.237 4.237 13 C 0.019 3.981 14 C -0.117 4.117 15 C -0.096 4.096 16 C -0.135 4.135 17 C -0.105 4.105 18 C -0.102 4.102 19 C 0.082 3.918 20 N -0.661 5.661 21 C 0.086 3.914 22 C 0.144 3.856 23 F -0.162 7.162 24 C -0.267 4.267 25 H 0.287 0.713 26 H 0.124 0.876 27 H 0.098 0.902 28 H 0.122 0.878 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.341 0.659 34 H 0.051 0.949 35 H 0.084 0.916 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.970 -8.218 -5.048 10.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.146 4.146 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.472 4.472 8 H 0.103 0.897 9 C 0.133 3.867 10 C -0.195 4.195 11 C -0.074 4.074 12 C -0.239 4.239 13 C 0.018 3.982 14 C -0.135 4.135 15 C -0.115 4.115 16 C -0.136 4.136 17 C -0.106 4.106 18 C -0.121 4.121 19 C -0.046 4.046 20 N -0.289 5.289 21 C -0.043 4.043 22 C 0.125 3.875 23 F -0.141 7.141 24 C -0.288 4.288 25 H 0.098 0.902 26 H 0.141 0.859 27 H 0.116 0.884 28 H 0.140 0.860 29 H 0.133 0.867 30 H 0.138 0.862 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.156 0.844 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.957 -8.271 -4.312 10.563 hybrid contribution 0.200 0.887 -0.743 1.174 sum -4.757 -7.384 -5.055 10.134 Atomic orbital electron populations 1.69795 1.07814 1.30160 1.31982 1.26042 0.94825 1.01829 0.91900 0.86242 0.80172 0.79416 0.80333 1.18471 1.20038 1.18682 1.19668 0.98469 0.91087 1.37967 0.89729 1.17448 0.90488 0.91281 0.87514 1.21041 0.99770 0.97145 1.01582 1.20298 0.97825 0.91208 0.98079 1.17943 1.01733 0.92197 1.12055 1.18711 0.92022 0.93108 0.94310 1.21232 0.99795 0.92889 0.99563 1.20276 0.92449 0.97778 1.00971 1.20389 0.93957 0.96071 1.03140 1.20334 0.94954 0.94760 1.00556 1.20603 0.93926 0.96521 1.01018 1.21352 0.93429 0.88107 1.01753 1.63473 1.04375 1.10919 1.50120 1.21298 0.89531 0.97480 0.95945 1.17205 0.94146 0.79663 0.96456 1.91352 1.88895 1.45839 1.88008 1.20621 1.06153 0.91742 1.10255 0.90167 0.85853 0.88370 0.86035 0.86688 0.86162 0.89443 0.92778 0.84409 0.93103 0.89770 0.87545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.47 10.96 55.55 0.61 -17.86 16 2 C 0.08 1.74 5.13 -17.33 -0.09 1.65 16 3 Si 0.91 17.20 29.60 -169.99 -5.03 12.17 16 4 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 5 H -0.28 -5.04 7.11 56.52 0.40 -4.64 16 6 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 7 C -0.44 -10.99 9.03 -37.86 -0.34 -11.34 16 8 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 9 C 0.14 3.44 5.57 -106.81 -0.60 2.84 16 10 C -0.18 -4.30 8.63 -39.27 -0.34 -4.63 16 11 C -0.06 -1.24 9.44 -39.67 -0.37 -1.62 16 12 C -0.24 -5.31 5.50 -104.57 -0.58 -5.89 16 13 C 0.02 0.37 5.30 -104.89 -0.56 -0.19 16 14 C -0.12 -2.12 8.86 -39.18 -0.35 -2.47 16 15 C -0.10 -1.52 10.03 -39.65 -0.40 -1.92 16 16 C -0.13 -2.08 6.27 -104.16 -0.65 -2.73 16 17 C -0.11 -1.70 6.25 -104.36 -0.65 -2.35 16 18 C -0.10 -1.86 9.51 -39.20 -0.37 -2.23 16 19 C 0.08 1.05 7.45 -4.10 -0.03 1.02 16 20 N -0.66 -7.79 7.71 -114.01 -0.88 -8.67 16 21 C 0.09 1.04 7.45 -4.09 -0.03 1.01 16 22 C 0.14 3.39 7.10 -39.50 -0.28 3.10 16 23 F -0.16 -3.65 15.87 2.25 0.04 -3.61 16 24 C -0.27 -6.50 9.70 -39.22 -0.38 -6.88 16 25 H 0.29 6.18 8.30 -40.82 -0.34 5.84 16 26 H 0.12 3.05 6.16 -52.49 -0.32 2.72 16 27 H 0.10 1.98 8.04 -52.49 -0.42 1.56 16 28 H 0.12 2.17 7.79 -52.49 -0.41 1.77 16 29 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 30 H 0.12 2.11 8.04 -52.49 -0.42 1.69 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.34 2.99 8.92 -39.29 -0.35 2.64 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.11 2.46 8.06 -52.49 -0.42 2.04 16 LS Contribution 310.53 15.07 4.68 4.68 Total: -1.00 -26.52 310.53 -10.61 -37.14 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -4.01 Total: 8.77 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: -6.02 Total: -32.62 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: -0.27 Total: -26.53 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.04 Total: -3.61 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.17 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -26.52 -10.61 -37.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242676923.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.932 kcal (2) G-P(sol) polarization free energy of solvation -26.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds