Wall clock time and date at job start Tue Mar 31 2020 05:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86794 * 120.00313 * 2 1 4 4 H 1.48502 * 109.47442 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47317 * 300.00599 * 3 2 1 6 6 H 1.48501 * 109.47206 * 60.00298 * 3 2 1 7 7 C 1.40117 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00023 * 180.02562 * 7 2 1 9 9 C 1.41010 * 120.00171 * 359.97438 * 7 2 1 10 10 N 1.33675 * 119.12873 * 180.02562 * 9 7 2 11 11 C 1.31562 * 120.83348 * 180.02562 * 10 9 7 12 12 C 1.40492 * 119.08821 * 0.25269 * 11 10 9 13 13 C 1.47827 * 120.79653 * 179.72552 * 12 11 10 14 14 C 1.40115 * 120.86823 * 359.72024 * 13 12 11 15 15 N 1.32016 * 118.99841 * 179.78598 * 14 13 12 16 16 C 1.32621 * 120.90527 * 0.47875 * 15 14 13 17 17 N 1.38150 * 119.03700 * 179.75008 * 16 15 14 18 18 C 1.47476 * 111.00016 * 264.05223 * 17 16 15 19 19 C 1.53515 * 87.93163 * 138.70351 * 18 17 16 20 20 C 1.47482 * 110.99980 * 0.02562 * 17 16 15 21 21 N 1.32627 * 121.93175 * 359.77060 * 16 15 14 22 22 C 1.32013 * 120.90649 * 359.97438 * 21 16 15 23 23 C 1.40499 * 118.41158 * 359.52880 * 12 11 10 24 24 N 1.31560 * 119.08493 * 0.47177 * 23 12 11 25 25 H 0.97005 * 119.99911 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.45199 * 179.97438 * 11 10 9 27 27 H 1.08001 * 120.50235 * 0.02562 * 14 13 12 28 28 H 1.09007 * 113.47436 * 253.46421 * 18 17 16 29 29 H 1.08996 * 113.48095 * 23.93721 * 18 17 16 30 30 H 1.09005 * 114.16677 * 220.32943 * 19 18 17 31 31 H 1.09000 * 114.34902 * 87.63737 * 19 18 17 32 32 H 1.09007 * 113.47303 * 336.06180 * 20 17 16 33 33 H 1.08998 * 113.47682 * 106.46672 * 20 17 16 34 34 H 1.07995 * 120.50223 * 180.02562 * 22 21 16 35 35 H 1.08003 * 120.45964 * 180.21402 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 3.7008 1.3463 -0.0006 5 1 1.8820 2.3965 -1.2124 6 1 1.8822 2.3963 1.2125 7 6 2.0073 -1.2135 -0.0005 8 1 3.0873 -1.2135 -0.0001 9 6 1.3022 -2.4346 -0.0005 10 7 1.9881 -3.5820 -0.0005 11 6 1.3644 -4.7404 -0.0010 12 6 -0.0403 -4.7599 -0.0070 13 6 -0.7796 -6.0400 -0.0139 14 6 -0.0975 -7.2639 -0.0205 15 7 -0.7946 -8.3851 -0.0221 16 6 -2.1206 -8.3627 -0.0272 17 7 -2.8114 -9.5590 -0.0341 18 6 -3.1940 -9.9405 -1.4063 19 6 -2.8097 -11.3841 -1.0525 20 6 -1.8834 -10.7052 -0.0339 21 7 -2.8030 -7.2254 -0.0263 22 6 -2.1806 -6.0612 -0.0197 23 6 -0.7259 -3.5335 -0.0021 24 7 -0.0344 -2.4143 -0.0015 25 1 -0.4850 0.8401 0.0004 26 1 1.9247 -5.6637 -0.0015 27 1 0.9822 -7.2898 -0.0202 28 1 -4.2567 -9.8122 -1.6124 29 1 -2.5586 -9.4977 -2.1733 30 1 -2.2860 -11.9143 -1.8480 31 1 -3.6149 -11.9666 -0.6047 32 1 -0.8982 -10.4663 -0.4346 33 1 -1.8345 -11.2242 0.9234 34 1 -2.7428 -5.1391 -0.0186 35 1 -1.8057 -3.5098 -0.0029 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242703142.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:53 Heat of formation + Delta-G solvation = 147.713528 kcal Electronic energy + Delta-G solvation = -20583.269287 eV Core-core repulsion = 17390.350082 eV Total energy + Delta-G solvation = -3192.919205 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.113 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.29809 -39.48497 -38.69950 -34.37234 -33.43899 -32.90973 -32.04700 -30.18942 -28.21738 -26.20393 -25.84628 -24.56861 -23.15341 -22.33354 -21.32909 -20.01061 -18.31235 -17.84154 -17.32219 -16.03796 -15.90800 -15.53838 -15.03246 -14.75259 -14.69775 -14.24607 -13.59951 -13.43092 -13.13311 -12.91619 -12.60245 -12.14635 -12.10895 -11.55359 -11.53262 -11.46552 -11.11571 -11.00254 -10.80781 -10.51335 -10.48058 -10.24492 -9.72036 -9.46124 -9.40188 -9.14738 -8.70429 -7.60043 -7.57811 -6.88013 -5.00769 0.98293 1.45863 2.45850 2.75421 2.87984 2.92823 2.94437 3.53495 3.63471 4.02476 4.23229 4.40882 4.50339 4.70855 4.92098 4.98251 5.27289 5.38274 5.39546 5.44089 5.54547 5.60079 5.63446 5.64375 5.65401 5.82416 5.88145 6.01396 6.05070 6.25325 6.57598 6.61036 6.74381 7.01722 7.03661 7.27790 7.52099 7.82324 8.13486 8.21780 8.45409 8.78764 9.75650 9.94412 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.057181 B = 0.003136 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.555878 B = 8926.953475 C = 9295.156493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.687 5.687 2 C 0.055 3.945 3 Si 0.925 3.075 4 H -0.255 1.255 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.360 4.360 8 H 0.100 0.900 9 C 0.373 3.627 10 N -0.589 5.589 11 C 0.194 3.806 12 C -0.330 4.330 13 C -0.066 4.066 14 C 0.124 3.876 15 N -0.531 5.531 16 C 0.396 3.604 17 N -0.412 5.412 18 C 0.021 3.979 19 C -0.148 4.148 20 C 0.013 3.987 21 N -0.496 5.496 22 C 0.126 3.874 23 C 0.187 3.813 24 N -0.505 5.505 25 H 0.282 0.718 26 H 0.133 0.867 27 H 0.164 0.836 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.167 0.833 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.041 -10.837 -2.187 11.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.306 5.306 2 C -0.174 4.174 3 Si 0.747 3.253 4 H -0.178 1.178 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.392 4.392 8 H 0.118 0.882 9 C 0.143 3.857 10 N -0.307 5.307 11 C 0.017 3.983 12 C -0.341 4.341 13 C -0.072 4.072 14 C -0.045 4.045 15 N -0.247 5.247 16 C 0.041 3.959 17 N -0.133 5.133 18 C -0.107 4.107 19 C -0.186 4.186 20 C -0.116 4.116 21 N -0.210 5.210 22 C -0.043 4.043 23 C 0.009 3.991 24 N -0.221 5.221 25 H 0.094 0.906 26 H 0.150 0.850 27 H 0.181 0.819 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.103 0.897 34 H 0.184 0.816 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.651 -10.362 -1.653 11.110 hybrid contribution 0.783 0.739 -0.384 1.143 sum -2.869 -9.624 -2.037 10.247 Atomic orbital electron populations 1.70119 1.07576 1.29085 1.23869 1.26302 0.95231 1.02066 0.93813 0.85962 0.80855 0.79403 0.79034 1.17800 1.19294 1.19285 1.19666 0.95404 0.87846 1.36289 0.88153 1.19966 0.85993 0.90913 0.88855 1.68666 1.40643 0.98396 1.22951 1.22649 0.90254 0.95975 0.89377 1.19417 0.95185 0.92141 1.27389 1.20375 0.94779 0.94832 0.97232 1.23018 1.00146 0.86379 0.94909 1.68038 1.08254 1.32382 1.16055 1.21412 0.85619 0.91371 0.97492 1.66001 1.26227 0.98229 1.22877 1.23669 1.02775 0.94920 0.89329 1.23177 1.00195 0.95824 0.99447 1.23776 0.97185 0.89881 1.00740 1.67830 1.41212 0.97910 1.14060 1.23165 0.91321 0.95244 0.94552 1.23037 0.99110 0.87770 0.89223 1.69361 1.08056 1.26648 1.18015 0.90633 0.84961 0.81935 0.89081 0.91208 0.90170 0.88763 0.88120 0.89668 0.81623 0.84963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -16.50 11.40 55.55 0.63 -15.87 16 2 C 0.06 1.28 5.50 -17.34 -0.10 1.18 16 3 Si 0.92 16.77 29.56 -169.99 -5.02 11.74 16 4 H -0.25 -4.56 7.11 56.52 0.40 -4.16 16 5 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 6 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 7 C -0.36 -9.03 9.35 -37.83 -0.35 -9.38 16 8 H 0.10 2.40 7.85 -52.48 -0.41 1.99 16 9 C 0.37 9.75 7.35 -158.15 -1.16 8.59 16 10 N -0.59 -14.43 10.34 -12.40 -0.13 -14.56 16 11 C 0.19 4.08 10.72 -16.82 -0.18 3.90 16 12 C -0.33 -6.71 5.94 -104.27 -0.62 -7.33 16 13 C -0.07 -1.18 5.91 -104.56 -0.62 -1.79 16 14 C 0.12 2.05 10.73 -16.77 -0.18 1.87 16 15 N -0.53 -8.90 8.16 -13.61 -0.11 -9.01 16 16 C 0.40 6.84 6.76 -322.84 -2.18 4.66 16 17 N -0.41 -6.13 6.50 -184.93 -1.20 -7.34 16 18 C 0.02 0.25 7.66 -7.54 -0.06 0.19 16 19 C -0.15 -1.36 8.47 -26.20 -0.22 -1.58 16 20 C 0.01 0.16 7.35 -7.54 -0.06 0.10 16 21 N -0.50 -8.99 10.45 -13.61 -0.14 -9.13 16 22 C 0.13 2.19 10.73 -16.77 -0.18 2.01 16 23 C 0.19 4.11 10.72 -16.82 -0.18 3.93 16 24 N -0.51 -12.91 7.82 -12.40 -0.10 -13.01 16 25 H 0.28 6.00 8.29 -40.82 -0.34 5.66 16 26 H 0.13 2.27 6.42 -52.49 -0.34 1.94 16 27 H 0.16 2.30 6.42 -52.49 -0.34 1.97 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.87 7.89 -51.93 -0.41 0.46 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 1.27 6.61 -51.92 -0.34 0.93 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.17 2.55 6.42 -52.49 -0.34 2.22 16 35 H 0.13 2.50 6.42 -52.48 -0.34 2.16 16 LS Contribution 301.62 15.07 4.55 4.55 Total: -1.00 -29.29 301.62 -10.95 -40.24 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -3.34 Total: 6.03 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: -6.09 Total: 6.36 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: -1.05 Total: -68.92 kcal Atomic # 14 Polarization: 16.77 SS G_CDS: -5.02 Total: 11.74 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.29 -10.95 -40.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242703142.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.956 kcal (2) G-P(sol) polarization free energy of solvation -29.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds