Wall clock time and date at job start Tue Mar 31 2020 05:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86804 * 120.00135 * 2 1 4 4 H 1.48497 * 109.47152 * 275.40235 * 3 2 1 5 5 H 1.48504 * 109.46782 * 35.40280 * 3 2 1 6 6 H 1.48501 * 109.47212 * 155.39855 * 3 2 1 7 7 C 1.39917 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99885 * 342.10482 * 7 2 1 9 9 C 1.41322 * 120.00438 * 161.83407 * 7 2 1 10 10 C 1.40542 * 120.20105 * 329.91349 * 9 7 2 11 11 C 1.38674 * 119.64666 * 179.80969 * 10 9 7 12 12 C 1.48399 * 119.95884 * 180.20671 * 11 10 9 13 13 C 1.39766 * 120.53651 * 310.23764 * 12 11 10 14 14 C 1.38420 * 118.31102 * 180.02562 * 13 12 11 15 15 C 1.38317 * 119.28479 * 359.97438 * 14 13 12 16 16 N 1.31886 * 121.02347 * 359.97438 * 15 14 13 17 17 C 1.31750 * 121.85749 * 359.74526 * 16 15 14 18 18 C 1.50701 * 119.70273 * 180.28959 * 17 16 15 19 19 C 1.52998 * 117.49952 * 8.86941 * 18 17 16 20 20 C 1.52998 * 117.49809 * 300.24461 * 18 17 16 21 21 C 1.39809 * 120.07708 * 0.44273 * 11 10 9 22 22 C 1.38231 * 120.41952 * 359.78937 * 21 11 10 23 23 C 1.38064 * 120.35021 * 359.97438 * 22 21 11 24 24 F 1.35106 * 120.04487 * 180.02562 * 23 22 21 25 25 H 0.96996 * 119.99995 * 0.02562 * 1 2 3 26 26 H 1.07992 * 120.17616 * 0.02562 * 10 9 7 27 27 H 1.07998 * 120.84508 * 359.97438 * 13 12 11 28 28 H 1.08000 * 120.35922 * 180.02562 * 14 13 12 29 29 H 1.07997 * 119.48665 * 179.97438 * 15 14 13 30 30 H 1.09005 * 115.54591 * 154.58014 * 18 17 16 31 31 H 1.08999 * 117.49890 * 0.02562 * 19 18 17 32 32 H 1.09000 * 117.49611 * 145.01760 * 19 18 17 33 33 H 1.09004 * 117.50183 * 214.97584 * 20 18 17 34 34 H 1.09002 * 117.50032 * 359.97438 * 20 18 17 35 35 H 1.08000 * 119.79203 * 179.76167 * 21 11 10 36 36 H 1.08006 * 119.82401 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.3759 2.1123 -1.3938 5 1 1.5017 2.6170 0.8111 6 1 3.5925 1.4099 0.5829 7 6 2.0081 -1.2117 -0.0005 8 1 1.5073 -2.1245 0.2865 9 6 3.3685 -1.2421 -0.3821 10 6 3.8620 -0.3140 -1.3150 11 6 5.1998 -0.3518 -1.6782 12 6 5.7293 0.6279 -2.6592 13 6 5.0743 0.8397 -3.8755 14 6 5.6086 1.7638 -4.7567 15 6 6.7626 2.4421 -4.4083 16 7 7.3581 2.2215 -3.2524 17 6 6.8836 1.3559 -2.3798 18 6 7.5998 1.1467 -1.0704 19 6 8.7395 2.1080 -0.7272 20 6 9.0507 0.6645 -1.1279 21 6 6.0492 -1.3147 -1.1251 22 6 5.5658 -2.2321 -0.2109 23 6 4.2381 -2.2073 0.1668 24 9 3.7724 -3.1065 1.0612 25 1 -0.4850 0.8400 -0.0004 26 1 3.2037 0.4268 -1.7440 27 1 4.1745 0.2955 -4.1220 28 1 5.1292 1.9538 -5.7056 29 1 7.1826 3.1635 -5.0936 30 1 6.9813 0.7849 -0.2489 31 1 8.9711 2.8919 -1.4482 32 1 8.8710 2.3790 0.3204 33 1 9.3870 -0.0141 -0.3440 34 1 9.4871 0.4981 -2.1128 35 1 7.0894 -1.3424 -1.4141 36 1 6.2304 -2.9721 0.2101 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243687475.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:46 Heat of formation + Delta-G solvation = 23.698686 kcal Electronic energy + Delta-G solvation = -21483.861283 eV Core-core repulsion = 18233.351678 eV Total energy + Delta-G solvation = -3250.509605 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.107 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -47.47192 -40.27985 -37.64169 -36.67309 -33.96449 -32.61142 -31.34837 -30.63596 -28.26744 -25.49043 -24.26236 -23.41372 -22.18885 -21.69026 -20.50947 -20.14188 -17.70249 -16.75523 -16.60212 -16.02708 -15.47794 -15.21997 -14.84877 -14.63436 -14.23778 -13.93599 -13.61766 -13.44937 -13.05365 -12.87208 -12.44938 -12.17503 -12.04184 -11.73891 -11.67545 -11.34960 -10.95477 -10.86035 -10.64195 -10.56047 -10.23896 -10.13530 -9.88794 -9.51458 -9.31113 -9.21263 -8.59909 -7.93156 -7.41770 -7.11210 -4.64818 1.15800 1.44960 2.33561 2.37937 2.99505 3.09367 3.19949 3.76979 3.83776 4.19184 4.31806 4.41882 4.77711 5.01362 5.03505 5.14353 5.18817 5.29378 5.33737 5.50653 5.58760 5.74558 5.77374 5.80065 5.86032 6.02912 6.19398 6.25387 6.32828 6.33401 6.42599 6.45849 6.70285 6.84350 6.95089 7.16382 7.24405 7.41012 7.53093 7.81879 8.16730 8.18921 8.39263 8.57382 9.90293 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.015613 B = 0.006915 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.891833 B = 4047.998744 C = 4880.679139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.087 3.913 3 Si 0.904 3.096 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.242 1.242 7 C -0.436 4.436 8 H 0.097 0.903 9 C 0.066 3.934 10 C -0.199 4.199 11 C -0.025 4.025 12 C -0.066 4.066 13 C -0.068 4.068 14 C -0.179 4.179 15 C 0.086 3.914 16 N -0.485 5.485 17 C 0.164 3.836 18 C -0.109 4.109 19 C -0.165 4.165 20 C -0.160 4.160 21 C -0.197 4.197 22 C -0.113 4.113 23 C -0.004 4.004 24 F -0.155 7.155 25 H 0.288 0.712 26 H 0.110 0.890 27 H 0.137 0.863 28 H 0.132 0.868 29 H 0.151 0.849 30 H 0.129 0.871 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.230 4.534 -5.466 13.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.134 4.134 3 Si 0.730 3.270 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.165 1.165 7 C -0.464 4.464 8 H 0.115 0.885 9 C 0.062 3.938 10 C -0.218 4.218 11 C -0.026 4.026 12 C -0.067 4.067 13 C -0.094 4.094 14 C -0.198 4.198 15 C -0.071 4.071 16 N -0.193 5.193 17 C 0.027 3.973 18 C -0.128 4.128 19 C -0.202 4.202 20 C -0.197 4.197 21 C -0.216 4.216 22 C -0.133 4.133 23 C -0.025 4.025 24 F -0.134 7.134 25 H 0.099 0.901 26 H 0.127 0.873 27 H 0.155 0.845 28 H 0.150 0.850 29 H 0.168 0.832 30 H 0.146 0.854 31 H 0.122 0.878 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.127 0.873 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 11.663 5.055 -5.217 13.740 hybrid contribution -0.877 0.114 -0.228 0.913 sum 10.786 5.169 -5.446 13.142 Atomic orbital electron populations 1.69683 1.08060 1.30574 1.33661 1.26130 0.94760 1.01583 0.90908 0.86399 0.81592 0.79825 0.79223 1.19360 1.21268 1.16466 1.19415 0.92630 0.96537 1.37815 0.88513 1.17605 0.93317 0.91271 0.91622 1.20900 0.94042 1.04044 1.02848 1.18189 0.93492 0.94754 0.96162 1.19787 0.95158 0.96943 0.94861 1.21776 0.98990 0.96160 0.92481 1.22023 0.98290 0.98567 1.00970 1.22587 0.92948 0.98145 0.93380 1.67257 1.32584 1.16657 1.02822 1.20395 0.91737 0.91415 0.93769 1.21023 0.90723 1.05811 0.95206 1.22945 1.01799 0.93530 1.01896 1.22901 0.96358 0.97651 1.02838 1.20240 0.98363 0.99352 1.03675 1.20529 0.93652 0.99767 0.99310 1.17853 0.92179 0.95873 0.96549 1.91321 1.89577 1.66221 1.66326 0.90105 0.87278 0.84510 0.85032 0.83186 0.85357 0.87780 0.88921 0.88475 0.88987 0.87323 0.87226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.70 13.93 55.55 0.77 -19.92 16 2 C 0.09 2.22 5.40 -17.34 -0.09 2.12 16 3 Si 0.90 20.34 24.52 -169.99 -4.17 16.17 16 4 H -0.27 -5.84 6.71 56.52 0.38 -5.47 16 5 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.24 -5.57 6.87 56.52 0.39 -5.18 16 7 C -0.44 -11.65 9.25 -37.78 -0.35 -12.00 16 8 H 0.10 2.76 7.97 -52.49 -0.42 2.34 16 9 C 0.07 1.63 5.10 -106.80 -0.54 1.08 16 10 C -0.20 -4.54 6.64 -38.55 -0.26 -4.80 16 11 C -0.03 -0.51 4.85 -104.96 -0.51 -1.02 16 12 C -0.07 -1.20 5.48 -104.75 -0.57 -1.77 16 13 C -0.07 -1.12 9.66 -38.94 -0.38 -1.49 16 14 C -0.18 -2.41 10.10 -39.49 -0.40 -2.81 16 15 C 0.09 1.18 11.17 -17.50 -0.20 0.98 16 16 N -0.48 -7.73 9.32 -9.20 -0.09 -7.82 16 17 C 0.16 2.82 6.45 -82.23 -0.53 2.29 16 18 C -0.11 -1.70 4.19 -91.77 -0.38 -2.09 16 19 C -0.16 -2.16 10.02 -26.73 -0.27 -2.43 16 20 C -0.16 -2.06 10.03 -26.73 -0.27 -2.33 16 21 C -0.20 -3.79 7.85 -39.00 -0.31 -4.09 16 22 C -0.11 -2.29 9.99 -39.65 -0.40 -2.69 16 23 C 0.00 -0.10 7.31 -38.59 -0.28 -0.38 16 24 F -0.16 -3.72 16.76 2.25 0.04 -3.68 16 25 H 0.29 6.75 8.30 -40.82 -0.34 6.41 16 26 H 0.11 2.51 4.74 -52.49 -0.25 2.26 16 27 H 0.14 2.12 8.06 -52.49 -0.42 1.70 16 28 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 29 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.13 2.18 6.60 -51.93 -0.34 1.84 16 31 H 0.10 1.40 7.57 -51.93 -0.39 1.00 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.11 1.86 7.10 -52.49 -0.37 1.49 16 36 H 0.11 1.92 8.06 -52.48 -0.42 1.50 16 LS Contribution 307.64 15.07 4.64 4.64 Total: -1.00 -27.37 307.64 -8.44 -35.82 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -3.91 Total: 6.21 kcal Atomic # 6 Polarization: -25.69 SS G_CDS: -5.73 Total: -31.42 kcal Atomic # 7 Polarization: -28.43 SS G_CDS: 0.69 Total: -27.74 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.04 Total: -3.68 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.17 Total: 16.17 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.37 -8.44 -35.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243687475.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.517 kcal (2) G-P(sol) polarization free energy of solvation -27.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds