Wall clock time and date at job start Tue Mar 31 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86804 * 120.00135 * 2 1 4 4 H 1.48497 * 109.47152 * 275.40235 * 3 2 1 5 5 H 1.48504 * 109.46782 * 35.40280 * 3 2 1 6 6 H 1.48501 * 109.47212 * 155.39855 * 3 2 1 7 7 C 1.39917 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99885 * 342.10482 * 7 2 1 9 9 C 1.41322 * 120.00438 * 161.83407 * 7 2 1 10 10 C 1.40542 * 120.20105 * 329.91349 * 9 7 2 11 11 C 1.38674 * 119.64666 * 179.80969 * 10 9 7 12 12 C 1.48399 * 119.95884 * 180.20671 * 11 10 9 13 13 C 1.39766 * 120.53651 * 310.23764 * 12 11 10 14 14 C 1.38420 * 118.31102 * 180.02562 * 13 12 11 15 15 C 1.38317 * 119.28479 * 359.97438 * 14 13 12 16 16 N 1.31886 * 121.02347 * 359.97438 * 15 14 13 17 17 C 1.31750 * 121.85749 * 359.74526 * 16 15 14 18 18 C 1.50701 * 119.70273 * 180.28959 * 17 16 15 19 19 C 1.52998 * 117.49952 * 8.86941 * 18 17 16 20 20 C 1.52998 * 117.49809 * 300.24461 * 18 17 16 21 21 C 1.39809 * 120.07708 * 0.44273 * 11 10 9 22 22 C 1.38231 * 120.41952 * 359.78937 * 21 11 10 23 23 C 1.38064 * 120.35021 * 359.97438 * 22 21 11 24 24 F 1.35106 * 120.04487 * 180.02562 * 23 22 21 25 25 H 0.96996 * 119.99995 * 0.02562 * 1 2 3 26 26 H 1.07992 * 120.17616 * 0.02562 * 10 9 7 27 27 H 1.07998 * 120.84508 * 359.97438 * 13 12 11 28 28 H 1.08000 * 120.35922 * 180.02562 * 14 13 12 29 29 H 1.07997 * 119.48665 * 179.97438 * 15 14 13 30 30 H 1.09005 * 115.54591 * 154.58014 * 18 17 16 31 31 H 1.08999 * 117.49890 * 0.02562 * 19 18 17 32 32 H 1.09000 * 117.49611 * 145.01760 * 19 18 17 33 33 H 1.09004 * 117.50183 * 214.97584 * 20 18 17 34 34 H 1.09002 * 117.50032 * 359.97438 * 20 18 17 35 35 H 1.08000 * 119.79203 * 179.76167 * 21 11 10 36 36 H 1.08006 * 119.82401 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.3759 2.1123 -1.3938 5 1 1.5017 2.6170 0.8111 6 1 3.5925 1.4099 0.5829 7 6 2.0081 -1.2117 -0.0005 8 1 1.5073 -2.1245 0.2865 9 6 3.3685 -1.2421 -0.3821 10 6 3.8620 -0.3140 -1.3150 11 6 5.1998 -0.3518 -1.6782 12 6 5.7293 0.6279 -2.6592 13 6 5.0743 0.8397 -3.8755 14 6 5.6086 1.7638 -4.7567 15 6 6.7626 2.4421 -4.4083 16 7 7.3581 2.2215 -3.2524 17 6 6.8836 1.3559 -2.3798 18 6 7.5998 1.1467 -1.0704 19 6 8.7395 2.1080 -0.7272 20 6 9.0507 0.6645 -1.1279 21 6 6.0492 -1.3147 -1.1251 22 6 5.5658 -2.2321 -0.2109 23 6 4.2381 -2.2073 0.1668 24 9 3.7724 -3.1065 1.0612 25 1 -0.4850 0.8400 -0.0004 26 1 3.2037 0.4268 -1.7440 27 1 4.1745 0.2955 -4.1220 28 1 5.1292 1.9538 -5.7056 29 1 7.1826 3.1635 -5.0936 30 1 6.9813 0.7849 -0.2489 31 1 8.9711 2.8919 -1.4482 32 1 8.8710 2.3790 0.3204 33 1 9.3870 -0.0141 -0.3440 34 1 9.4871 0.4981 -2.1128 35 1 7.0894 -1.3424 -1.4141 36 1 6.2304 -2.9721 0.2101 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243687475.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:45 Heat of formation + Delta-G solvation = 10.245280 kcal Electronic energy + Delta-G solvation = -21484.444666 eV Core-core repulsion = 18233.351678 eV Total energy + Delta-G solvation = -3251.092988 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.107 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.33586 -41.50207 -39.31434 -37.74341 -35.78891 -34.02250 -32.69584 -32.27508 -29.77985 -27.28324 -25.48832 -24.78118 -23.41491 -23.16238 -21.82954 -21.58711 -19.50970 -18.37539 -17.94338 -17.42656 -16.95288 -16.79914 -16.35754 -16.10946 -15.92939 -15.25200 -15.06465 -14.83977 -14.63774 -14.27208 -13.89644 -13.85278 -13.67508 -13.39880 -13.09299 -12.77381 -12.35678 -12.27520 -12.26140 -11.97398 -11.72354 -11.61722 -11.33853 -11.10627 -10.79023 -10.42048 -9.85543 -9.71132 -9.04326 -9.00530 -6.62282 -0.13481 0.25831 0.62381 0.71069 1.16964 1.29006 1.38037 2.00185 2.41811 2.67222 3.13153 3.25029 3.32886 3.60797 3.76533 3.83445 3.98867 4.07993 4.12244 4.26234 4.27315 4.37824 4.50637 4.59019 4.62252 4.76227 4.82762 4.86705 5.04391 5.09767 5.16135 5.26815 5.29217 5.37057 5.42866 5.51331 5.63612 5.76873 5.81928 5.98677 6.21200 6.52601 6.64414 7.02152 8.06954 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.015613 B = 0.006915 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.891833 B = 4047.998744 C = 4880.679139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.056 3.944 3 Si 0.955 3.045 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.479 4.479 8 H 0.056 0.944 9 C 0.049 3.951 10 C -0.205 4.205 11 C -0.017 4.017 12 C -0.103 4.103 13 C -0.080 4.080 14 C -0.170 4.170 15 C 0.094 3.906 16 N -0.496 5.496 17 C 0.160 3.840 18 C -0.138 4.138 19 C -0.153 4.153 20 C -0.142 4.142 21 C -0.171 4.171 22 C -0.104 4.104 23 C -0.033 4.033 24 F -0.166 7.166 25 H 0.297 0.703 26 H 0.104 0.896 27 H 0.135 0.865 28 H 0.169 0.831 29 H 0.191 0.809 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.140 0.860 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.834 6.315 -7.297 17.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.160 4.160 3 Si 0.778 3.222 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.177 1.177 7 C -0.508 4.508 8 H 0.074 0.926 9 C 0.045 3.955 10 C -0.224 4.224 11 C -0.018 4.018 12 C -0.105 4.105 13 C -0.106 4.106 14 C -0.189 4.189 15 C -0.063 4.063 16 N -0.205 5.205 17 C 0.023 3.977 18 C -0.157 4.157 19 C -0.190 4.190 20 C -0.179 4.179 21 C -0.190 4.190 22 C -0.123 4.123 23 C -0.053 4.053 24 F -0.145 7.145 25 H 0.108 0.892 26 H 0.122 0.878 27 H 0.153 0.847 28 H 0.186 0.814 29 H 0.208 0.792 30 H 0.127 0.873 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.133 0.867 34 H 0.112 0.888 35 H 0.158 0.842 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 15.271 6.827 -7.049 18.152 hybrid contribution -1.725 -0.456 0.182 1.794 sum 13.546 6.371 -6.867 16.469 Atomic orbital electron populations 1.69703 1.09006 1.31712 1.35979 1.26687 0.95301 1.03639 0.90356 0.85635 0.79866 0.76954 0.79782 1.18151 1.19767 1.17696 1.19297 0.94135 0.95844 1.41538 0.92598 1.17760 0.92861 0.92587 0.92255 1.20921 0.95378 1.03581 1.02553 1.18455 0.92463 0.95033 0.95848 1.19745 0.96903 0.98300 0.95519 1.21966 0.99039 0.96987 0.92614 1.22393 0.97974 0.96913 1.01667 1.23337 0.92378 0.97680 0.92892 1.67359 1.33027 1.16485 1.03587 1.20533 0.91308 0.91308 0.94523 1.20988 0.91728 1.08684 0.94331 1.22997 0.99655 0.93610 1.02750 1.22985 0.93640 0.97795 1.03517 1.20674 0.99546 0.97320 1.01441 1.20891 0.92481 1.00243 0.98683 1.18232 0.93576 0.96093 0.97363 1.91287 1.89923 1.66500 1.66763 0.89213 0.87804 0.84705 0.81380 0.79225 0.87289 0.87980 0.87457 0.86675 0.88788 0.84209 0.83806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.94 13.93 21.82 0.30 -45.64 16 2 C 0.06 3.03 5.40 85.25 0.46 3.49 16 3 Si 0.95 42.96 24.52 68.60 1.68 44.64 16 4 H -0.26 -10.89 6.71 99.48 0.67 -10.23 16 5 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 6 H -0.25 -11.70 6.87 99.48 0.68 -11.02 16 7 C -0.48 -27.42 9.25 23.44 0.22 -27.21 16 8 H 0.06 3.52 7.97 -2.91 -0.02 3.49 16 9 C 0.05 2.50 5.10 -21.27 -0.11 2.39 16 10 C -0.20 -9.46 6.64 22.94 0.15 -9.31 16 11 C -0.02 -0.68 4.85 -20.09 -0.10 -0.77 16 12 C -0.10 -3.55 5.48 -19.94 -0.11 -3.66 16 13 C -0.08 -2.43 9.66 22.68 0.22 -2.22 16 14 C -0.17 -3.90 10.10 22.33 0.23 -3.67 16 15 C 0.09 2.13 11.17 84.70 0.95 3.08 16 16 N -0.50 -14.01 9.32 -183.03 -1.71 -15.72 16 17 C 0.16 5.05 6.45 42.83 0.28 5.33 16 18 C -0.14 -3.95 4.19 -11.54 -0.05 -4.00 16 19 C -0.15 -3.52 10.02 30.59 0.31 -3.21 16 20 C -0.14 -3.12 10.03 30.59 0.31 -2.81 16 21 C -0.17 -6.16 7.85 22.65 0.18 -5.98 16 22 C -0.10 -4.03 9.99 22.23 0.22 -3.81 16 23 C -0.03 -1.56 7.31 22.91 0.17 -1.39 16 24 F -0.17 -8.23 16.76 44.97 0.75 -7.48 16 25 H 0.30 14.52 8.30 -92.71 -0.77 13.75 16 26 H 0.10 4.84 4.74 -2.91 -0.01 4.83 16 27 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 28 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 29 H 0.19 2.73 8.06 -2.91 -0.02 2.70 16 30 H 0.11 3.50 6.60 -2.38 -0.02 3.49 16 31 H 0.10 2.40 7.57 -2.39 -0.02 2.39 16 32 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.12 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.14 4.23 7.10 -2.91 -0.02 4.21 16 36 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -63.12 307.64 5.39 -57.73 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 1.04 Total: 20.21 kcal Atomic # 6 Polarization: -57.06 SS G_CDS: 3.31 Total: -53.75 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -1.40 Total: -61.36 kcal Atomic # 9 Polarization: -8.23 SS G_CDS: 0.75 Total: -7.48 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.68 Total: 44.64 kcal Total: -63.12 5.39 -57.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243687475.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.974 kcal (2) G-P(sol) polarization free energy of solvation -63.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds