Wall clock time and date at job start Tue Mar 31 2020 05:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30855 * 1 3 3 Si 1.86800 * 120.00232 * 2 1 4 4 H 1.48504 * 109.47320 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46995 * 300.00056 * 3 2 1 6 6 H 1.48502 * 109.47181 * 60.00119 * 3 2 1 7 7 C 1.39898 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00558 * 162.52852 * 7 2 1 9 9 C 1.41349 * 119.99532 * 342.51953 * 7 2 1 10 10 C 1.40846 * 120.15255 * 155.02214 * 9 7 2 11 11 C 1.37548 * 120.02282 * 179.70398 * 10 9 7 12 12 C 1.38761 * 120.35060 * 0.02562 * 11 10 9 13 13 F 1.35102 * 119.84482 * 179.97438 * 12 11 10 14 14 C 1.39987 * 120.31286 * 0.02562 * 12 11 10 15 15 C 1.48382 * 120.01976 * 179.97438 * 14 12 11 16 16 C 1.39760 * 120.54154 * 244.72291 * 15 14 12 17 17 C 1.38417 * 118.31715 * 179.79784 * 16 15 14 18 18 C 1.38319 * 119.27656 * 0.45340 * 17 16 15 19 19 N 1.31882 * 121.03356 * 359.79043 * 18 17 16 20 20 C 1.31752 * 121.84989 * 359.97112 * 19 18 17 21 21 C 1.50704 * 119.69998 * 179.97438 * 20 19 18 22 22 C 1.52999 * 117.50046 * 8.77181 * 21 20 19 23 23 C 1.52999 * 117.49770 * 300.11086 * 21 20 19 24 24 C 1.38678 * 119.96959 * 359.97438 * 14 12 11 25 25 H 0.97008 * 119.99691 * 359.97438 * 1 2 3 26 26 H 1.08003 * 119.99211 * 359.72743 * 10 9 7 27 27 H 1.08008 * 119.82636 * 180.02562 * 11 10 9 28 28 H 1.08009 * 120.84394 * 359.97438 * 16 15 14 29 29 H 1.07993 * 120.36303 * 180.21660 * 17 16 15 30 30 H 1.08004 * 119.48314 * 179.76228 * 18 17 16 31 31 H 1.08998 * 115.54905 * 154.44170 * 21 20 19 32 32 H 1.09004 * 117.49362 * 359.97438 * 22 21 20 33 33 H 1.08995 * 117.49863 * 145.01309 * 22 21 20 34 34 H 1.09002 * 117.49576 * 214.97230 * 23 21 20 35 35 H 1.08999 * 117.50265 * 359.97438 * 23 21 20 36 36 H 1.07997 * 120.17067 * 180.02562 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.7027 1.3463 -0.0006 5 1 1.8839 2.3964 -1.2125 6 1 1.8839 2.3964 1.2125 7 6 2.0081 -1.2115 -0.0005 8 1 3.0506 -1.2331 -0.2813 9 6 1.3502 -2.4075 0.3666 10 6 1.8211 -3.6479 -0.1062 11 6 1.1825 -4.8105 0.2577 12 6 0.0731 -4.7701 1.0902 13 9 -0.5466 -5.9183 1.4407 14 6 -0.4078 -3.5452 1.5676 15 6 -1.5950 -3.5095 2.4569 16 6 -2.7786 -2.8959 2.0372 17 6 -3.8591 -2.8930 2.9023 18 6 -3.7311 -3.4836 4.1465 19 7 -2.5995 -4.0507 4.5167 20 6 -1.5462 -4.0821 3.7259 21 6 -0.2769 -4.7427 4.1987 22 6 -0.3364 -5.5313 5.5085 23 6 0.3843 -4.1817 5.4592 24 6 0.2259 -2.3649 1.2090 25 1 -0.4850 0.8401 0.0004 26 1 2.6841 -3.6862 -0.7544 27 1 1.5466 -5.7600 -0.1063 28 1 -2.8492 -2.4381 1.0615 29 1 -4.7907 -2.4313 2.6105 30 1 -4.5710 -3.4798 4.8256 31 1 0.3772 -5.1207 3.4130 32 1 -1.2936 -5.5718 6.0284 33 1 0.2787 -6.4278 5.5846 34 1 1.4734 -4.1911 5.5030 35 1 -0.0985 -3.3345 5.9463 36 1 -0.1421 -1.4181 1.5757 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243688991.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:05 Heat of formation + Delta-G solvation = 23.074465 kcal Electronic energy + Delta-G solvation = -21580.347242 eV Core-core repulsion = 18329.810568 eV Total energy + Delta-G solvation = -3250.536673 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.107 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -47.57408 -39.96395 -37.39894 -36.46297 -33.85706 -32.58881 -31.16457 -29.48397 -28.44372 -25.21631 -24.13624 -23.33058 -22.00461 -21.20009 -20.39701 -20.16752 -17.58512 -16.63808 -16.22351 -15.84331 -15.44996 -15.08132 -14.78185 -14.49020 -14.20983 -13.76012 -13.41967 -13.18230 -12.86169 -12.62003 -12.13834 -12.04398 -11.93620 -11.39829 -11.21367 -11.19111 -11.08604 -10.93531 -10.56941 -10.40912 -10.14844 -10.05217 -9.72682 -9.32379 -9.23961 -9.03975 -8.36322 -7.61115 -7.41972 -6.94161 -4.52113 1.43825 1.69072 2.48773 2.68619 2.98842 3.01349 3.04639 3.80681 3.96054 4.34477 4.48311 4.59614 4.97351 5.19943 5.28242 5.35099 5.38795 5.47223 5.54095 5.68949 5.74321 5.94502 5.98809 6.00622 6.04415 6.20450 6.45058 6.50044 6.57849 6.64011 6.71828 6.80214 6.94928 7.02672 7.10082 7.27776 7.54154 7.65947 7.82396 8.01289 8.35149 8.39704 8.66649 8.69974 9.99750 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.016121 B = 0.006077 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.421643 B = 4606.521333 C = 5123.755464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.454 4.454 8 H 0.083 0.917 9 C 0.102 3.898 10 C -0.200 4.200 11 C -0.117 4.117 12 C -0.032 4.032 13 F -0.167 7.167 14 C -0.064 4.064 15 C -0.058 4.058 16 C -0.060 4.060 17 C -0.182 4.182 18 C 0.085 3.915 19 N -0.488 5.488 20 C 0.170 3.830 21 C -0.107 4.107 22 C -0.163 4.163 23 C -0.161 4.161 24 C -0.120 4.120 25 H 0.283 0.717 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.137 0.863 29 H 0.130 0.870 30 H 0.149 0.851 31 H 0.127 0.873 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.094 -2.539 5.379 6.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.483 4.483 8 H 0.101 0.899 9 C 0.099 3.901 10 C -0.220 4.220 11 C -0.136 4.136 12 C -0.052 4.052 13 F -0.147 7.147 14 C -0.066 4.066 15 C -0.060 4.060 16 C -0.086 4.086 17 C -0.202 4.202 18 C -0.072 4.072 19 N -0.197 5.197 20 C 0.033 3.967 21 C -0.126 4.126 22 C -0.200 4.200 23 C -0.199 4.199 24 C -0.139 4.139 25 H 0.094 0.906 26 H 0.122 0.878 27 H 0.121 0.879 28 H 0.155 0.845 29 H 0.148 0.852 30 H 0.166 0.834 31 H 0.144 0.856 32 H 0.122 0.878 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.279 -2.789 6.198 7.546 hybrid contribution 0.003 1.082 -1.035 1.497 sum -3.275 -1.707 5.164 6.349 Atomic orbital electron populations 1.69801 1.07638 1.29533 1.34456 1.25935 0.94785 1.01553 0.92067 0.86236 0.81052 0.80681 0.78715 1.18227 1.19851 1.19582 1.19610 0.98153 0.90889 1.39645 0.89914 1.17580 0.91148 0.92371 0.88957 1.20899 1.03508 0.91970 1.05633 1.20460 0.95682 0.98282 0.99182 1.17176 0.98781 0.80144 1.09068 1.91306 1.82874 1.48750 1.91724 1.18283 0.95551 0.93059 0.99673 1.19624 0.94467 0.97563 0.94323 1.21756 0.91467 0.95472 0.99866 1.21984 0.99703 1.02746 0.95775 1.22543 0.95093 0.94876 0.94694 1.67238 0.99603 1.17113 1.35717 1.20376 0.92638 0.94186 0.89500 1.21001 0.95513 1.03669 0.92380 1.22903 1.02614 0.94570 0.99918 1.22899 0.99349 0.97590 1.00062 1.21280 0.98327 0.95239 0.99081 0.90623 0.87839 0.87860 0.84479 0.85242 0.83391 0.85563 0.87843 0.89073 0.88573 0.89007 0.85406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.99 10.97 55.54 0.61 -18.38 16 2 C 0.08 1.76 5.14 -17.35 -0.09 1.67 16 3 Si 0.91 17.59 29.59 -169.99 -5.03 12.56 16 4 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 5 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 6 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.45 -11.17 9.04 -37.78 -0.34 -11.51 16 8 H 0.08 1.95 7.90 -52.49 -0.41 1.54 16 9 C 0.10 2.53 5.57 -106.86 -0.59 1.94 16 10 C -0.20 -4.57 9.78 -38.85 -0.38 -4.95 16 11 C -0.12 -2.55 9.99 -39.64 -0.40 -2.94 16 12 C -0.03 -0.72 5.79 -38.73 -0.22 -0.94 16 13 F -0.17 -3.71 15.69 2.25 0.04 -3.68 16 14 C -0.06 -1.46 4.64 -104.90 -0.49 -1.94 16 15 C -0.06 -1.21 5.00 -104.75 -0.52 -1.73 16 16 C -0.06 -1.12 9.89 -38.95 -0.39 -1.50 16 17 C -0.18 -2.82 10.10 -39.49 -0.40 -3.22 16 18 C 0.08 1.32 11.17 -17.50 -0.20 1.13 16 19 N -0.49 -8.85 9.32 -9.20 -0.09 -8.93 16 20 C 0.17 3.35 6.33 -82.23 -0.52 2.83 16 21 C -0.11 -1.96 5.21 -91.77 -0.48 -2.44 16 22 C -0.16 -2.47 10.03 -26.69 -0.27 -2.74 16 23 C -0.16 -2.53 10.24 -26.69 -0.27 -2.81 16 24 C -0.12 -2.92 8.37 -38.55 -0.32 -3.24 16 25 H 0.28 6.19 8.30 -40.82 -0.34 5.85 16 26 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 27 H 0.10 1.98 8.06 -52.48 -0.42 1.56 16 28 H 0.14 2.52 8.06 -52.48 -0.42 2.09 16 29 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.15 1.76 8.06 -52.48 -0.42 1.33 16 31 H 0.13 2.51 5.43 -51.93 -0.28 2.22 16 32 H 0.10 1.58 7.57 -51.93 -0.39 1.19 16 33 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.13 3.25 6.18 -52.49 -0.32 2.92 16 LS Contribution 313.27 15.07 4.72 4.72 Total: -1.00 -26.40 313.27 -9.56 -35.96 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -3.93 Total: 10.16 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: -5.88 Total: -32.42 kcal Atomic # 7 Polarization: -27.84 SS G_CDS: 0.52 Total: -27.31 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.04 Total: -3.68 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.56 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -26.40 -9.56 -35.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243688991.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.034 kcal (2) G-P(sol) polarization free energy of solvation -26.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds