Wall clock time and date at job start Tue Mar 31 2020 05:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30798 * 1 3 3 Si 1.86802 * 120.00126 * 2 1 4 4 H 1.48504 * 109.47125 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46895 * 299.99615 * 3 2 1 6 6 H 1.48503 * 109.46828 * 59.99655 * 3 2 1 7 7 C 1.40049 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00504 * 197.58484 * 7 2 1 9 9 C 1.40826 * 119.99557 * 17.58714 * 7 2 1 10 10 C 1.40791 * 120.30370 * 24.93942 * 9 7 2 11 11 C 1.36348 * 120.01925 * 179.97438 * 10 9 7 12 12 C 1.39208 * 120.65324 * 0.02562 * 11 10 9 13 13 F 1.35097 * 119.69614 * 179.70434 * 12 11 10 14 14 C 1.38399 * 120.60686 * 359.97438 * 12 11 10 15 15 C 1.39048 * 119.96144 * 0.02562 * 14 12 11 16 16 C 1.47894 * 120.32206 * 179.97438 * 15 14 12 17 17 C 1.40055 * 120.56195 * 64.76277 * 16 15 14 18 18 C 1.38325 * 118.28993 * 179.75997 * 17 16 15 19 19 C 1.38385 * 119.30793 * 0.49336 * 18 17 16 20 20 N 1.31929 * 121.09166 * 359.77090 * 19 18 17 21 21 C 1.31682 * 121.88048 * 359.97430 * 20 19 18 22 22 C 1.50704 * 119.72651 * 179.97438 * 21 20 19 23 23 C 1.53003 * 117.49296 * 8.77019 * 22 21 20 24 24 C 1.53000 * 117.49555 * 300.11433 * 22 21 20 25 25 H 0.96996 * 119.99738 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.98484 * 359.95144 * 10 9 7 27 27 H 1.08007 * 119.67374 * 180.02562 * 11 10 9 28 28 H 1.07998 * 120.01968 * 180.02562 * 14 12 11 29 29 H 1.08008 * 120.85586 * 359.97438 * 17 16 15 30 30 H 1.07996 * 120.35139 * 180.22153 * 18 17 16 31 31 H 1.08005 * 119.45335 * 179.74537 * 19 18 17 32 32 H 1.08999 * 115.55353 * 154.43722 * 22 21 20 33 33 H 1.08998 * 117.50192 * 359.97438 * 23 22 21 34 34 H 1.09002 * 117.49298 * 145.02207 * 23 22 21 35 35 H 1.09004 * 117.49217 * 214.97442 * 24 22 21 36 36 H 1.09001 * 117.49956 * 359.97070 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.7021 1.3463 0.0006 5 1 1.8833 2.3964 -1.2126 6 1 1.8832 2.3964 1.2125 7 6 2.0083 -1.2128 0.0005 8 1 3.0504 -1.2346 0.2831 9 6 1.3535 -2.4041 -0.3674 10 6 0.2251 -2.3638 -1.2085 11 6 -0.4042 -3.5208 -1.5615 12 6 0.0572 -4.7496 -1.0979 13 9 -0.5846 -5.8835 -1.4550 14 6 1.1640 -4.8199 -0.2699 15 6 1.8250 -3.6559 0.1061 16 6 3.0082 -3.7217 0.9910 17 6 4.1836 -4.3516 0.5628 18 6 5.2635 -4.3815 1.4266 19 6 5.1459 -3.8029 2.6782 20 7 4.0242 -3.2209 3.0571 21 6 2.9706 -3.1622 2.2694 22 6 1.7134 -2.4858 2.7522 23 6 1.7884 -1.7140 4.0711 24 6 1.0449 -3.0504 4.0073 25 1 -0.4849 0.8400 -0.0004 26 1 -0.1424 -1.4162 -1.5737 27 1 -1.2691 -3.4834 -2.2073 28 1 1.5140 -5.7784 0.0839 29 1 4.2463 -4.7994 -0.4181 30 1 6.1872 -4.8553 1.1293 31 1 5.9863 -3.8286 3.3562 32 1 1.0645 -2.0875 1.9722 33 1 2.7469 -1.6957 4.5898 34 1 1.1886 -0.8081 4.1589 35 1 -0.0439 -3.0232 4.0530 36 1 1.5141 -3.9114 4.4835 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243689130.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:54 Heat of formation + Delta-G solvation = 23.152569 kcal Electronic energy + Delta-G solvation = -21863.506103 eV Core-core repulsion = 18612.972816 eV Total energy + Delta-G solvation = -3250.533286 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.107 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.54472 -39.85073 -37.45197 -36.15720 -33.83878 -32.43307 -31.01376 -29.58197 -28.50391 -25.30305 -23.86131 -23.16445 -21.73981 -21.16569 -20.28070 -19.92469 -17.54427 -16.70590 -16.09890 -15.66588 -15.41983 -14.74560 -14.58678 -14.28430 -14.27795 -13.91443 -13.36715 -13.11567 -12.78337 -12.52162 -12.20919 -12.08288 -11.82125 -11.43050 -11.24505 -11.11733 -10.93750 -10.74241 -10.44982 -10.17909 -10.07946 -9.80725 -9.68931 -9.31619 -9.11890 -8.83443 -8.14144 -7.63496 -7.41448 -7.01904 -4.56589 1.64238 1.85148 2.49604 2.68884 2.97336 3.00298 3.03701 3.77295 4.19625 4.32533 4.73063 4.87264 5.22987 5.26754 5.39545 5.48180 5.65461 5.68272 5.79022 5.84265 5.94944 5.97856 6.07583 6.17665 6.32622 6.44503 6.47525 6.63138 6.73986 6.76140 6.88013 6.92611 6.99631 7.14255 7.25448 7.32231 7.52898 7.69840 7.78152 7.97861 8.33278 8.58054 8.60294 8.66850 9.88642 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.010080 B = 0.010059 C = 0.006576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.192656 B = 2782.883233 C = 4257.208457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.079 3.921 3 Si 0.904 3.096 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.435 4.435 8 H 0.081 0.919 9 C 0.122 3.878 10 C -0.138 4.138 11 C -0.122 4.122 12 C -0.047 4.047 13 F -0.174 7.174 14 C -0.092 4.092 15 C -0.166 4.166 16 C -0.022 4.022 17 C -0.084 4.084 18 C -0.184 4.184 19 C 0.075 3.925 20 N -0.489 5.489 21 C 0.178 3.822 22 C -0.096 4.096 23 C -0.166 4.166 24 C -0.172 4.172 25 H 0.286 0.714 26 H 0.129 0.871 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.144 0.856 32 H 0.151 0.849 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.328 -1.711 2.631 5.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.463 4.463 8 H 0.100 0.900 9 C 0.119 3.881 10 C -0.157 4.157 11 C -0.142 4.142 12 C -0.067 4.067 13 F -0.153 7.153 14 C -0.111 4.111 15 C -0.168 4.168 16 C -0.024 4.024 17 C -0.110 4.110 18 C -0.204 4.204 19 C -0.082 4.082 20 N -0.198 5.198 21 C 0.041 3.959 22 C -0.114 4.114 23 C -0.203 4.203 24 C -0.209 4.209 25 H 0.097 0.903 26 H 0.147 0.853 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.145 0.855 30 H 0.142 0.858 31 H 0.161 0.839 32 H 0.168 0.832 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.068 -1.211 3.470 5.483 hybrid contribution 0.374 0.127 -0.965 1.043 sum 4.443 -1.084 2.505 5.214 Atomic orbital electron populations 1.69775 1.07590 1.29920 1.32945 1.25944 0.94724 1.01531 0.91908 0.86286 0.81313 0.80722 0.78885 1.18186 1.19465 1.19544 1.19528 0.98236 0.90713 1.37833 0.90044 1.17509 0.90831 0.90959 0.88786 1.20944 0.98393 0.96705 0.99702 1.20493 1.00268 0.91882 1.01517 1.17141 0.98755 0.81411 1.09412 1.91289 1.81850 1.50416 1.91743 1.20455 0.95326 0.97147 0.98180 1.18102 0.99834 0.93100 1.05768 1.19410 0.93845 0.95540 0.93604 1.21737 0.92133 0.97756 0.99340 1.21886 0.99416 1.03189 0.95913 1.22472 0.95368 0.95693 0.94653 1.67238 0.99758 1.16343 1.36452 1.20550 0.92425 0.93618 0.89348 1.21315 0.95673 1.02043 0.92412 1.22831 1.02061 0.94553 1.00854 1.22866 0.98912 0.97481 1.01685 0.90300 0.85330 0.88123 0.88139 0.85467 0.85833 0.83889 0.83163 0.88312 0.89375 0.89058 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.70 10.96 55.55 0.61 -17.10 16 2 C 0.08 1.78 5.14 -17.31 -0.09 1.69 16 3 Si 0.90 17.45 29.60 -169.99 -5.03 12.42 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 6 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.44 -10.24 6.29 -37.92 -0.24 -10.48 16 8 H 0.08 1.98 7.08 -52.49 -0.37 1.61 16 9 C 0.12 2.89 4.53 -106.55 -0.48 2.41 16 10 C -0.14 -3.25 8.63 -39.30 -0.34 -3.59 16 11 C -0.12 -2.74 9.94 -39.90 -0.40 -3.14 16 12 C -0.05 -1.07 7.31 -39.16 -0.29 -1.36 16 13 F -0.17 -3.82 17.26 2.25 0.04 -3.78 16 14 C -0.09 -2.02 9.71 -39.22 -0.38 -2.40 16 15 C -0.17 -3.70 4.67 -104.24 -0.49 -4.19 16 16 C -0.02 -0.45 4.38 -104.75 -0.46 -0.91 16 17 C -0.08 -1.51 9.90 -38.87 -0.38 -1.89 16 18 C -0.18 -2.86 10.10 -39.50 -0.40 -3.26 16 19 C 0.07 1.22 11.17 -17.46 -0.20 1.02 16 20 N -0.49 -9.35 9.32 -9.12 -0.08 -9.44 16 21 C 0.18 3.67 5.91 -82.14 -0.49 3.18 16 22 C -0.10 -1.96 4.93 -91.77 -0.45 -2.41 16 23 C -0.17 -2.96 10.03 -26.69 -0.27 -3.23 16 24 C -0.17 -3.03 10.24 -26.69 -0.27 -3.31 16 25 H 0.29 5.93 8.29 -40.82 -0.34 5.59 16 26 H 0.13 3.06 6.17 -52.49 -0.32 2.74 16 27 H 0.10 2.05 8.06 -52.48 -0.42 1.62 16 28 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 29 H 0.13 2.09 8.06 -52.48 -0.42 1.66 16 30 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.14 1.83 8.06 -52.48 -0.42 1.41 16 32 H 0.15 3.49 5.08 -51.93 -0.26 3.23 16 33 H 0.10 1.74 7.57 -51.93 -0.39 1.34 16 34 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 LS Contribution 310.24 15.07 4.68 4.68 Total: -1.00 -24.91 310.24 -9.28 -34.19 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -3.87 Total: 10.90 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: -5.62 Total: -31.87 kcal Atomic # 7 Polarization: -27.06 SS G_CDS: 0.52 Total: -26.53 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.04 Total: -3.78 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.42 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -24.91 -9.28 -34.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243689130.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.339 kcal (2) G-P(sol) polarization free energy of solvation -24.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds