Wall clock time and date at job start Tue Mar 31 2020 05:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86796 * 119.99790 * 2 1 4 4 H 1.48504 * 109.47454 * 270.00337 * 3 2 1 5 5 H 1.48504 * 109.47340 * 30.00410 * 3 2 1 6 6 H 1.48501 * 109.47029 * 150.00362 * 3 2 1 7 7 C 1.39925 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99723 * 162.78969 * 7 2 1 9 9 C 1.41421 * 120.00226 * 342.78466 * 7 2 1 10 10 C 1.40749 * 120.17286 * 334.77565 * 9 7 2 11 11 C 1.37897 * 119.96690 * 179.97438 * 10 9 7 12 12 F 1.35093 * 119.83864 * 179.97438 * 11 10 9 13 13 C 1.38671 * 120.32666 * 359.97438 * 11 10 9 14 14 C 1.39648 * 120.35031 * 0.04274 * 13 11 10 15 15 C 1.48418 * 119.98424 * 179.97438 * 14 13 11 16 16 C 1.39760 * 120.53550 * 130.32280 * 15 14 13 17 17 C 1.38414 * 118.30969 * 180.23604 * 16 15 14 18 18 C 1.38314 * 119.28503 * 359.46105 * 17 16 15 19 19 N 1.31882 * 121.02187 * 0.25881 * 18 17 16 20 20 C 1.31743 * 121.85666 * 0.02562 * 19 18 17 21 21 C 1.50700 * 119.70224 * 179.97438 * 20 19 18 22 22 C 1.53000 * 117.50142 * 8.61811 * 21 20 19 23 23 C 1.53000 * 117.49599 * 299.99521 * 21 20 19 24 24 C 1.38776 * 120.02801 * 0.23427 * 14 13 11 25 25 H 0.97002 * 119.99656 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.01730 * 359.97438 * 10 9 7 27 27 H 1.08000 * 119.82144 * 180.02562 * 13 11 10 28 28 H 1.07996 * 120.84177 * 0.02562 * 16 15 14 29 29 H 1.08005 * 120.35702 * 179.74181 * 17 16 15 30 30 H 1.07996 * 119.48419 * 180.27516 * 18 17 16 31 31 H 1.09004 * 115.55067 * 154.33000 * 21 20 19 32 32 H 1.09000 * 117.49608 * 359.97438 * 22 21 20 33 33 H 1.08993 * 117.49741 * 145.02449 * 22 21 20 34 34 H 1.09006 * 117.49792 * 214.98483 * 23 21 20 35 35 H 1.09002 * 117.49870 * 359.97438 * 23 21 20 36 36 H 1.08000 * 120.15894 * 179.72682 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0466 -1.4001 5 1 1.4398 2.6527 0.7001 6 1 3.5399 1.4402 0.7000 7 6 2.0079 -1.2118 -0.0005 8 1 3.0517 -1.2326 -0.2773 9 6 1.3484 -2.4093 0.3614 10 6 0.2194 -2.3691 1.2010 11 6 -0.4208 -3.5393 1.5508 12 9 -1.5039 -3.4978 2.3571 13 6 0.0416 -4.7585 1.0789 14 6 1.1607 -4.8140 0.2454 15 6 1.6491 -6.1233 -0.2545 16 6 1.9118 -6.3111 -1.6143 17 6 2.3608 -7.5523 -2.0309 18 6 2.5442 -8.5544 -1.0953 19 7 2.2932 -8.3455 0.1825 20 6 1.8592 -7.1829 0.6248 21 6 1.5873 -6.9979 2.0955 22 6 2.0226 -8.1192 3.0411 23 6 0.5378 -7.9060 2.7396 24 6 1.8197 -3.6459 -0.1112 25 1 -0.4850 0.8401 0.0004 26 1 -0.1453 -1.4223 1.5710 27 1 -0.4663 -5.6699 1.3576 28 1 1.7649 -5.5090 -2.3225 29 1 2.5701 -7.7350 -3.0746 30 1 2.8987 -9.5227 -1.4161 31 1 1.6597 -5.9738 2.4618 32 1 2.5053 -8.9910 2.5993 33 1 2.3816 -7.8329 4.0296 34 1 -0.0800 -7.4794 3.5299 35 1 0.0438 -8.6370 2.0995 36 1 2.6880 -3.6867 -0.7521 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243692526.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:09 Heat of formation + Delta-G solvation = 20.353942 kcal Electronic energy + Delta-G solvation = -21119.146595 eV Core-core repulsion = 17868.491951 eV Total energy + Delta-G solvation = -3250.654644 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.107 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.71202 -40.18170 -37.40902 -36.58900 -34.11990 -32.30051 -31.20993 -29.72506 -28.18681 -25.65874 -24.20773 -23.44744 -22.11850 -20.85997 -20.53440 -20.37535 -17.69293 -16.72025 -15.98663 -15.87619 -15.09166 -14.97342 -14.87117 -14.61378 -14.38329 -14.23216 -13.66231 -13.40721 -13.01288 -12.79149 -12.25629 -12.02175 -11.77076 -11.42264 -11.27850 -11.18579 -11.16225 -10.79085 -10.55942 -10.44377 -10.19179 -10.13286 -9.85134 -9.55040 -9.26101 -9.12661 -8.50688 -7.59023 -7.32258 -6.93140 -4.59027 1.26162 1.52930 2.56325 2.68477 2.99057 3.00762 3.07188 3.80358 3.85822 4.31405 4.41804 4.48655 4.85916 5.09247 5.12801 5.25689 5.33262 5.36933 5.45011 5.59454 5.70311 5.86155 5.87135 5.95712 6.10698 6.26553 6.33541 6.40473 6.47746 6.54096 6.55674 6.76566 6.87472 6.97741 7.05713 7.34778 7.55696 7.62232 7.76962 8.04378 8.25641 8.38782 8.65636 8.67656 10.00310 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.019337 B = 0.005042 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.677219 B = 5552.500858 C = 6398.882673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.456 4.456 8 H 0.083 0.917 9 C 0.128 3.872 10 C -0.194 4.194 11 C 0.105 3.895 12 F -0.166 7.166 13 C -0.253 4.253 14 C -0.011 4.011 15 C -0.058 4.058 16 C -0.068 4.068 17 C -0.180 4.180 18 C 0.084 3.916 19 N -0.485 5.485 20 C 0.164 3.836 21 C -0.106 4.106 22 C -0.165 4.165 23 C -0.162 4.162 24 C -0.207 4.207 25 H 0.284 0.716 26 H 0.130 0.870 27 H 0.105 0.895 28 H 0.136 0.864 29 H 0.130 0.870 30 H 0.149 0.851 31 H 0.129 0.871 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.967 -9.105 -0.377 9.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.484 4.484 8 H 0.101 0.899 9 C 0.125 3.875 10 C -0.214 4.214 11 C 0.086 3.914 12 F -0.145 7.145 13 C -0.273 4.273 14 C -0.012 4.012 15 C -0.060 4.060 16 C -0.094 4.094 17 C -0.199 4.199 18 C -0.073 4.073 19 N -0.194 5.194 20 C 0.027 3.973 21 C -0.124 4.124 22 C -0.202 4.202 23 C -0.199 4.199 24 C -0.227 4.227 25 H 0.096 0.904 26 H 0.147 0.853 27 H 0.124 0.876 28 H 0.154 0.846 29 H 0.148 0.852 30 H 0.167 0.833 31 H 0.147 0.853 32 H 0.122 0.878 33 H 0.110 0.890 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.852 -9.621 0.220 10.037 hybrid contribution -0.070 1.527 -0.749 1.703 sum 2.782 -8.093 -0.529 8.574 Atomic orbital electron populations 1.69808 1.07704 1.29771 1.33729 1.25968 0.94771 1.01631 0.92020 0.86263 0.80662 0.80228 0.79394 1.19313 1.19920 1.18262 1.19584 0.98055 0.90834 1.39964 0.89855 1.17267 0.90175 0.92093 0.87983 1.21362 1.00799 0.96027 1.03207 1.17543 0.85414 0.94969 0.93447 1.91343 1.53681 1.97556 1.71875 1.20268 1.02517 0.95351 1.09169 1.17863 0.95462 0.90100 0.97767 1.19775 0.98273 0.94719 0.93268 1.21737 0.95324 0.97109 0.95198 1.22003 1.02591 0.94418 1.00937 1.22561 0.97491 0.98959 0.88315 1.67245 1.12216 1.23021 1.16912 1.20393 0.94404 0.88110 0.94426 1.21007 1.05334 0.97646 0.88450 1.22938 0.97252 1.00591 0.99423 1.22900 0.92130 1.02087 1.02805 1.21074 1.03576 0.91509 1.06545 0.90447 0.85269 0.87648 0.84568 0.85179 0.83326 0.85342 0.87844 0.88982 0.88528 0.89067 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.50 10.96 55.55 0.61 -18.89 16 2 C 0.08 1.79 5.14 -17.34 -0.09 1.70 16 3 Si 0.91 17.70 29.59 -169.99 -5.03 12.67 16 4 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 6 H -0.26 -5.00 7.11 56.52 0.40 -4.59 16 7 C -0.46 -11.33 9.05 -37.74 -0.34 -11.67 16 8 H 0.08 1.97 7.90 -52.48 -0.41 1.56 16 9 C 0.13 3.20 5.56 -106.88 -0.59 2.61 16 10 C -0.19 -4.90 8.66 -38.76 -0.34 -5.24 16 11 C 0.11 2.50 7.28 -39.55 -0.29 2.21 16 12 F -0.17 -3.82 17.26 2.25 0.04 -3.78 16 13 C -0.25 -5.51 7.82 -38.90 -0.30 -5.82 16 14 C -0.01 -0.23 4.86 -104.98 -0.51 -0.74 16 15 C -0.06 -1.08 5.48 -104.74 -0.57 -1.66 16 16 C -0.07 -1.10 9.67 -38.95 -0.38 -1.48 16 17 C -0.18 -2.41 10.10 -39.49 -0.40 -2.81 16 18 C 0.08 1.15 11.17 -17.50 -0.20 0.96 16 19 N -0.49 -7.88 9.32 -9.21 -0.09 -7.97 16 20 C 0.16 2.88 6.45 -82.24 -0.53 2.35 16 21 C -0.11 -1.73 4.18 -91.77 -0.38 -2.11 16 22 C -0.16 -2.27 10.02 -26.73 -0.27 -2.53 16 23 C -0.16 -2.29 10.02 -26.73 -0.27 -2.56 16 24 C -0.21 -4.73 9.27 -38.52 -0.36 -5.08 16 25 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 26 H 0.13 3.41 6.18 -52.49 -0.32 3.09 16 27 H 0.11 2.16 7.06 -52.49 -0.37 1.79 16 28 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16 29 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 30 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 31 H 0.13 2.30 6.58 -51.93 -0.34 1.95 16 32 H 0.10 1.44 7.57 -51.93 -0.39 1.04 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.10 2.16 8.04 -52.49 -0.42 1.73 16 LS Contribution 313.40 15.07 4.72 4.72 Total: -1.00 -26.47 313.40 -9.50 -35.97 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -3.94 Total: 9.16 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: -5.81 Total: -31.88 kcal Atomic # 7 Polarization: -27.38 SS G_CDS: 0.52 Total: -26.86 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.04 Total: -3.78 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -26.47 -9.50 -35.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243692526.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.323 kcal (2) G-P(sol) polarization free energy of solvation -26.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds