Wall clock time and date at job start Tue Mar 31 2020 05:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30785 * 1 3 3 Si 1.86799 * 120.00148 * 2 1 4 4 H 1.48499 * 109.46949 * 269.99767 * 3 2 1 5 5 H 1.48500 * 109.46872 * 30.00090 * 3 2 1 6 6 H 1.48506 * 109.47026 * 149.99888 * 3 2 1 7 7 C 1.40063 * 119.99645 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00136 * 197.35464 * 7 2 1 9 9 C 1.40864 * 120.00184 * 17.35952 * 7 2 1 10 10 C 1.40755 * 120.33404 * 25.01842 * 9 7 2 11 11 C 1.36420 * 119.99282 * 180.25659 * 10 9 7 12 12 C 1.38949 * 120.68847 * 0.03986 * 11 10 9 13 13 C 1.38059 * 120.67795 * 359.96232 * 12 11 10 14 14 C 1.39192 * 119.98706 * 0.02562 * 13 12 11 15 15 C 1.47812 * 120.34395 * 179.97438 * 14 13 12 16 16 C 1.39989 * 120.57257 * 65.02090 * 15 14 13 17 17 C 1.38371 * 118.31168 * 180.02562 * 16 15 14 18 18 C 1.50700 * 120.30635 * 179.97438 * 17 16 15 19 19 C 1.53001 * 117.49920 * 188.62206 * 18 17 16 20 20 C 1.52997 * 60.00072 * 252.51029 * 19 18 17 21 21 C 1.38326 * 119.38352 * 359.97438 * 17 16 15 22 22 N 1.31966 * 121.13194 * 0.02562 * 21 17 16 23 23 C 1.31892 * 121.84445 * 359.69242 * 22 21 17 24 24 F 1.35093 * 119.76055 * 180.29613 * 23 22 21 25 25 H 0.96999 * 119.99489 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.00306 * 0.27425 * 10 9 7 27 27 H 1.07995 * 119.65383 * 180.02562 * 11 10 9 28 28 H 1.08002 * 119.65758 * 179.97438 * 12 11 10 29 29 H 1.08004 * 120.00421 * 179.97438 * 13 12 11 30 30 H 1.07997 * 120.84669 * 359.97438 * 16 15 14 31 31 H 1.08998 * 115.55673 * 334.32799 * 18 17 16 32 32 H 1.09007 * 117.50023 * 359.97438 * 19 18 17 33 33 H 1.09004 * 117.50135 * 145.02177 * 19 18 17 34 34 H 1.09000 * 117.50025 * 252.50588 * 20 19 18 35 35 H 1.09002 * 117.50088 * 107.48732 * 20 19 18 36 36 H 1.08005 * 119.43546 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.4894 2.0463 -1.4001 5 1 1.4393 2.6526 0.7001 6 1 3.5395 1.4401 0.7001 7 6 2.0081 -1.2130 0.0005 8 1 3.0512 -1.2343 0.2795 9 6 1.3519 -2.4053 -0.3629 10 6 0.2218 -2.3677 -1.2012 11 6 -0.4115 -3.5261 -1.5446 12 6 0.0463 -4.7509 -1.0743 13 6 1.1519 -4.8204 -0.2505 14 6 1.8198 -3.6559 0.1174 15 6 3.0040 -3.7211 0.9995 16 6 4.1771 -4.3535 0.5709 17 6 5.2574 -4.3878 1.4349 18 6 6.5421 -5.0573 1.0199 19 6 7.6222 -5.2374 2.0885 20 6 7.8068 -4.1972 0.9818 21 6 5.1471 -3.8017 2.6830 22 7 4.0298 -3.2115 3.0633 23 6 2.9739 -3.1469 2.2756 24 9 1.8533 -2.5271 2.7057 25 1 -0.4849 0.8401 0.0004 26 1 -0.1437 -1.4217 -1.5728 27 1 -1.2778 -3.4909 -2.1884 28 1 -0.4681 -5.6577 -1.3563 29 1 1.4982 -5.7782 0.1091 30 1 4.2372 -4.8039 -0.4088 31 1 6.4429 -5.8397 0.2675 32 1 7.4037 -4.8711 3.0917 33 1 8.2336 -6.1384 2.0394 34 1 8.5397 -4.4138 0.2047 35 1 7.7096 -3.1469 1.2569 36 1 5.9900 -3.8276 3.3579 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243861763.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:50 Heat of formation + Delta-G solvation = 30.841414 kcal Electronic energy + Delta-G solvation = -21439.672447 eV Core-core repulsion = 18189.472574 eV Total energy + Delta-G solvation = -3250.199873 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.107 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -47.97471 -39.85192 -37.67807 -36.76782 -33.79848 -32.66133 -30.77128 -29.64256 -28.26723 -25.44664 -24.02156 -23.26457 -22.33674 -21.22253 -20.93405 -19.45232 -17.46466 -17.25591 -16.77462 -15.74461 -15.56503 -15.10168 -14.88744 -14.57054 -14.07339 -13.44986 -13.25206 -12.86331 -12.70800 -12.59612 -12.45156 -12.35089 -11.77627 -11.62184 -11.48587 -11.29670 -11.16734 -10.81738 -10.80776 -10.52886 -10.42002 -9.87211 -9.70697 -9.28196 -9.10236 -9.05410 -8.09107 -7.51406 -7.39918 -6.87540 -4.47410 1.41173 1.64906 2.69202 2.87931 3.02440 3.06577 3.18101 3.74174 3.86123 4.17264 4.27979 4.52096 4.63516 4.83427 4.97447 5.10869 5.19074 5.30518 5.51934 5.56925 5.60877 5.78876 5.99279 6.02646 6.10824 6.16165 6.31295 6.36824 6.50119 6.60181 6.68070 6.94653 7.11154 7.23896 7.26060 7.45752 7.77327 7.89379 8.00537 8.14727 8.19725 8.49119 8.74044 8.83877 10.04388 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.014825 B = 0.006556 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.204713 B = 4269.860154 C = 5236.003067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.080 3.920 3 Si 0.905 3.095 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.445 4.445 8 H 0.075 0.925 9 C 0.137 3.863 10 C -0.158 4.158 11 C -0.097 4.097 12 C -0.246 4.246 13 C -0.063 4.063 14 C -0.201 4.201 15 C -0.037 4.037 16 C -0.055 4.055 17 C -0.124 4.124 18 C -0.103 4.103 19 C -0.179 4.179 20 C -0.171 4.171 21 C 0.104 3.896 22 N -0.518 5.518 23 C 0.313 3.687 24 F -0.098 7.098 25 H 0.284 0.716 26 H 0.120 0.880 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.137 0.863 31 H 0.113 0.887 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.927 -5.753 0.599 11.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.474 4.474 8 H 0.093 0.907 9 C 0.135 3.865 10 C -0.177 4.177 11 C -0.116 4.116 12 C -0.265 4.265 13 C -0.081 4.081 14 C -0.203 4.203 15 C -0.040 4.040 16 C -0.080 4.080 17 C -0.126 4.126 18 C -0.122 4.122 19 C -0.216 4.216 20 C -0.208 4.208 21 C -0.053 4.053 22 N -0.232 5.232 23 C 0.160 3.840 24 F -0.076 7.076 25 H 0.095 0.905 26 H 0.137 0.863 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.155 0.845 31 H 0.131 0.869 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 9.596 -5.169 1.468 10.998 hybrid contribution 0.078 0.571 -0.652 0.871 sum 9.674 -4.598 0.816 10.742 Atomic orbital electron populations 1.69796 1.07632 1.29625 1.33138 1.25926 0.94712 1.01416 0.91920 0.86340 0.80783 0.80522 0.79462 1.19016 1.19955 1.18469 1.19469 0.97829 0.91186 1.38884 0.90733 1.17459 0.90479 0.90665 0.87936 1.21043 0.98851 0.97141 1.00641 1.20490 0.98404 0.93323 0.99359 1.20238 1.01681 0.96295 1.08283 1.20476 0.95423 0.95239 0.96971 1.18211 1.00166 0.94390 1.07582 1.19524 0.95533 0.96446 0.92532 1.21461 0.90356 0.97151 0.99082 1.19920 0.95189 1.01869 0.95663 1.20833 0.87315 1.01766 1.02310 1.23056 1.02105 1.01277 0.95126 1.23042 0.98970 0.97313 1.01490 1.22093 0.93965 0.94928 0.94280 1.66887 1.00107 1.19205 1.37009 1.18475 0.82935 0.93283 0.89352 1.91646 1.46852 1.79277 1.89853 0.90518 0.86257 0.89354 0.89289 0.89288 0.84529 0.86864 0.88367 0.88491 0.88515 0.88508 0.82983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.73 10.97 55.55 0.61 -19.13 16 2 C 0.08 2.00 5.14 -17.31 -0.09 1.91 16 3 Si 0.90 18.84 29.59 -169.99 -5.03 13.81 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 6 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 7 C -0.45 -11.60 7.48 -37.90 -0.28 -11.89 16 8 H 0.07 1.96 7.08 -52.49 -0.37 1.59 16 9 C 0.14 3.56 5.47 -106.55 -0.58 2.98 16 10 C -0.16 -3.99 8.63 -39.29 -0.34 -4.33 16 11 C -0.10 -2.23 9.96 -39.97 -0.40 -2.63 16 12 C -0.25 -5.37 10.03 -39.38 -0.40 -5.77 16 13 C -0.06 -1.39 9.74 -39.29 -0.38 -1.77 16 14 C -0.20 -4.79 5.09 -104.23 -0.53 -5.32 16 15 C -0.04 -0.80 4.40 -104.68 -0.46 -1.26 16 16 C -0.06 -0.98 9.61 -38.88 -0.37 -1.36 16 17 C -0.12 -1.92 5.62 -104.54 -0.59 -2.51 16 18 C -0.10 -1.21 6.06 -91.77 -0.56 -1.76 16 19 C -0.18 -1.69 9.86 -26.73 -0.26 -1.96 16 20 C -0.17 -1.74 10.17 -26.73 -0.27 -2.02 16 21 C 0.10 1.71 10.46 -17.46 -0.18 1.53 16 22 N -0.52 -10.57 10.36 -13.20 -0.14 -10.71 16 23 C 0.31 7.08 7.63 -16.88 -0.13 6.95 16 24 F -0.10 -2.44 16.16 2.25 0.04 -2.41 16 25 H 0.28 6.53 8.29 -40.82 -0.34 6.19 16 26 H 0.12 3.09 6.19 -52.49 -0.32 2.76 16 27 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 28 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 30 H 0.14 2.19 8.06 -52.49 -0.42 1.77 16 31 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.10 0.90 6.19 -51.92 -0.32 0.58 16 33 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.15 1.99 6.02 -52.48 -0.32 1.68 16 LS Contribution 312.32 15.07 4.71 4.71 Total: -1.00 -27.97 312.32 -9.49 -37.46 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -3.85 Total: 5.46 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: -5.83 Total: -29.20 kcal Atomic # 7 Polarization: -30.31 SS G_CDS: 0.47 Total: -29.84 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.41 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.97 -9.49 -37.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243861763.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.303 kcal (2) G-P(sol) polarization free energy of solvation -27.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds