Wall clock time and date at job start Tue Mar 31 2020 05:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30780 * 1 3 3 Si 1.86796 * 120.00266 * 2 1 4 4 H 1.48507 * 109.47389 * 239.99935 * 3 2 1 5 5 H 1.48504 * 109.47115 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47606 * 119.99636 * 3 2 1 7 7 C 1.40062 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00571 * 167.68133 * 7 2 1 9 9 C 1.40878 * 119.99712 * 347.68377 * 7 2 1 10 10 C 1.41118 * 120.71959 * 333.48991 * 9 7 2 11 11 C 1.36882 * 118.39556 * 180.26320 * 10 9 7 12 12 C 1.38862 * 119.80999 * 359.73155 * 11 10 9 13 13 N 1.31745 * 121.50736 * 359.97438 * 12 11 10 14 14 C 1.32603 * 121.71640 * 0.02562 * 13 12 11 15 15 C 1.47749 * 119.99512 * 180.02562 * 14 13 12 16 16 C 1.39944 * 120.16555 * 123.28681 * 15 14 13 17 17 F 1.35095 * 120.11010 * 359.97438 * 16 15 14 18 18 C 1.38190 * 119.77764 * 179.72653 * 16 15 14 19 19 C 1.38329 * 120.12729 * 0.24961 * 18 16 15 20 20 C 1.38428 * 120.34158 * 0.02562 * 19 18 16 21 21 C 1.37905 * 120.21783 * 359.97285 * 20 19 18 22 22 C 1.50695 * 120.06668 * 180.02562 * 21 20 19 23 23 C 1.53000 * 117.49884 * 3.53465 * 22 21 20 24 24 C 1.53004 * 117.49968 * 294.87446 * 22 21 20 25 25 H 0.96996 * 119.99838 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.80052 * 359.97438 * 10 9 7 27 27 H 1.08000 * 120.09510 * 179.70740 * 11 10 9 28 28 H 1.08001 * 119.24821 * 179.97438 * 12 11 10 29 29 H 1.07997 * 119.93787 * 180.23168 * 18 16 15 30 30 H 1.08004 * 119.83081 * 179.97438 * 19 18 16 31 31 H 1.07997 * 119.89266 * 180.02562 * 20 19 18 32 32 H 1.08997 * 115.55008 * 149.20319 * 22 21 20 33 33 H 1.09000 * 117.50012 * 359.97438 * 23 22 21 34 34 H 1.09004 * 117.50196 * 145.02037 * 23 22 21 35 35 H 1.08990 * 117.49532 * 214.98202 * 24 22 21 36 36 H 1.09003 * 117.49293 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 3.0957 1.6963 -1.2125 5 1 1.2769 2.7465 -0.0006 6 1 3.0956 1.6964 1.2125 7 6 2.0082 -1.2129 0.0005 8 1 3.0695 -1.2239 -0.1990 9 6 1.3281 -2.4188 0.2613 10 6 0.1508 -2.4288 1.0393 11 6 -0.4685 -3.6280 1.2676 12 6 0.0641 -4.7930 0.7316 13 7 1.1603 -4.7764 0.0011 14 6 1.8086 -3.6490 -0.2577 15 6 3.0345 -3.6743 -1.0820 16 6 3.1169 -2.8984 -2.2438 17 9 2.0750 -2.1233 -2.6164 18 6 4.2694 -2.9239 -3.0057 19 6 5.3364 -3.7175 -2.6245 20 6 5.2583 -4.4913 -1.4794 21 6 4.1149 -4.4767 -0.7085 22 6 4.0338 -5.3200 0.5377 23 6 5.2823 -6.1075 0.9404 24 6 4.0673 -6.8400 0.3656 25 1 -0.4850 0.8400 -0.0004 26 1 -0.2493 -1.5129 1.4487 27 1 -1.3685 -3.6680 1.8632 28 1 -0.4317 -5.7343 0.9177 29 1 4.3372 -2.3233 -3.9007 30 1 6.2347 -3.7340 -3.2239 31 1 6.0958 -5.1079 -1.1884 32 1 3.4127 -4.9177 1.3380 33 1 6.1622 -6.0159 0.3036 34 1 5.4824 -6.2236 2.0056 35 1 3.4685 -7.4375 1.0528 36 1 4.1476 -7.2299 -0.6491 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244115964.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:51 Heat of formation + Delta-G solvation = 28.469507 kcal Electronic energy + Delta-G solvation = -22007.153634 eV Core-core repulsion = 18756.850907 eV Total energy + Delta-G solvation = -3250.302727 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.107 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.83280 -39.26844 -37.91405 -36.06488 -34.14051 -31.88170 -30.56172 -29.66284 -28.58338 -25.63769 -23.64705 -22.82936 -21.98844 -21.47163 -20.29321 -19.72738 -17.41282 -16.78430 -16.02771 -15.71160 -15.49861 -14.86135 -14.65797 -14.38106 -14.09835 -13.89969 -13.63903 -12.85510 -12.56118 -12.28884 -12.02394 -11.82894 -11.57221 -11.54012 -11.48853 -11.29195 -11.06069 -10.92744 -10.69602 -10.43411 -10.15277 -9.95188 -9.79481 -9.44166 -8.50140 -8.08278 -8.02102 -7.94532 -7.39130 -6.87874 -4.54042 1.69802 1.80475 2.61450 2.93116 2.98157 3.01698 3.18325 3.81529 4.02685 4.44575 4.57053 4.86628 5.11876 5.25895 5.33670 5.37453 5.46628 5.54457 5.63505 5.77301 5.94214 5.97206 6.15815 6.20954 6.26612 6.41165 6.44865 6.58949 6.65959 6.69662 6.82793 6.88530 6.90134 7.00669 7.13820 7.26270 7.52686 7.70618 7.81404 7.90149 8.35807 8.59854 8.66805 9.56989 9.99431 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.014900 B = 0.008051 C = 0.006228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.698109 B = 3477.139653 C = 4494.403189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.077 3.923 3 Si 0.910 3.090 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.428 4.428 8 H 0.080 0.920 9 C 0.089 3.911 10 C -0.131 4.131 11 C -0.148 4.148 12 C -0.038 4.038 13 N -0.439 5.439 14 C 0.007 3.993 15 C -0.001 4.001 16 C 0.124 3.876 17 F -0.122 7.122 18 C -0.172 4.172 19 C -0.108 4.108 20 C -0.143 4.143 21 C -0.019 4.019 22 C -0.087 4.087 23 C -0.191 4.191 24 C -0.157 4.157 25 H 0.285 0.715 26 H 0.129 0.871 27 H 0.097 0.903 28 H 0.120 0.880 29 H 0.126 0.874 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.374 -4.188 -0.732 8.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.456 4.456 8 H 0.098 0.902 9 C 0.084 3.916 10 C -0.156 4.156 11 C -0.169 4.169 12 C -0.199 4.199 13 N -0.147 5.147 14 C -0.131 4.131 15 C -0.002 4.002 16 C 0.103 3.897 17 F -0.100 7.100 18 C -0.191 4.191 19 C -0.126 4.126 20 C -0.161 4.161 21 C -0.020 4.020 22 C -0.105 4.105 23 C -0.228 4.228 24 C -0.194 4.194 25 H 0.096 0.904 26 H 0.147 0.853 27 H 0.116 0.884 28 H 0.137 0.863 29 H 0.144 0.856 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.129 0.871 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.420 -4.755 -1.088 8.880 hybrid contribution -0.417 1.827 0.245 1.890 sum 7.004 -2.928 -0.843 7.638 Atomic orbital electron populations 1.69735 1.07674 1.29812 1.33544 1.25969 0.94815 1.01569 0.91925 0.86306 0.80226 0.79731 0.80360 1.18551 1.20028 1.18552 1.19457 0.96415 0.90315 1.39459 0.90172 1.18288 0.91839 0.92387 0.89046 1.21452 0.97726 0.96976 0.99484 1.21430 0.99682 0.94576 1.01173 1.21626 0.96815 0.96494 1.05007 1.67056 1.06707 1.29625 1.11262 1.19127 0.98226 0.89800 1.05960 1.18274 0.93657 0.95469 0.92842 1.17805 0.85230 0.92611 0.94011 1.91546 1.55944 1.72012 1.90476 1.20941 0.93340 1.03317 1.01478 1.20752 0.97782 0.97082 0.97021 1.20843 0.97825 1.01526 0.95946 1.19040 0.92283 0.95886 0.94825 1.20746 1.00253 0.92345 0.97185 1.23103 0.92660 1.05895 1.01097 1.22831 1.00420 0.94170 1.01931 0.90386 0.85321 0.88443 0.86279 0.85645 0.86080 0.86149 0.87053 0.88800 0.89044 0.88960 0.89064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.56 10.81 55.55 0.60 -18.96 16 2 C 0.08 1.88 5.26 -17.32 -0.09 1.78 16 3 Si 0.91 18.40 29.58 -169.99 -5.03 13.37 16 4 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 7 C -0.43 -11.00 6.72 -37.90 -0.25 -11.25 16 8 H 0.08 2.05 6.90 -52.49 -0.36 1.69 16 9 C 0.09 2.33 5.37 -106.41 -0.57 1.76 16 10 C -0.13 -3.31 8.73 -38.98 -0.34 -3.65 16 11 C -0.15 -3.40 10.03 -39.84 -0.40 -3.80 16 12 C -0.04 -0.87 11.16 -17.36 -0.19 -1.06 16 13 N -0.44 -10.63 9.38 -9.18 -0.09 -10.72 16 14 C 0.01 0.17 5.08 -82.25 -0.42 -0.24 16 15 C 0.00 -0.01 4.84 -104.84 -0.51 -0.52 16 16 C 0.12 2.70 6.21 -38.96 -0.24 2.46 16 17 F -0.12 -2.96 15.25 2.25 0.03 -2.93 16 18 C -0.17 -3.04 10.01 -39.57 -0.40 -3.44 16 19 C -0.11 -1.67 10.04 -39.48 -0.40 -2.06 16 20 C -0.14 -2.32 9.35 -39.63 -0.37 -2.69 16 21 C -0.02 -0.37 5.63 -104.21 -0.59 -0.96 16 22 C -0.09 -1.55 4.93 -91.77 -0.45 -2.00 16 23 C -0.19 -2.62 9.87 -26.69 -0.26 -2.89 16 24 C -0.16 -2.36 10.22 -26.69 -0.27 -2.63 16 25 H 0.29 6.47 8.29 -40.82 -0.34 6.14 16 26 H 0.13 3.30 6.21 -52.49 -0.33 2.97 16 27 H 0.10 1.94 8.06 -52.49 -0.42 1.51 16 28 H 0.12 2.37 8.06 -52.49 -0.42 1.94 16 29 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 30 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 31 H 0.12 1.60 5.93 -52.49 -0.31 1.29 16 32 H 0.11 2.26 7.34 -51.93 -0.38 1.88 16 33 H 0.09 1.15 6.10 -51.93 -0.32 0.83 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 307.21 15.07 4.63 4.63 Total: -1.00 -27.77 307.21 -9.40 -37.16 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -3.79 Total: 8.64 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: -5.76 Total: -31.20 kcal Atomic # 7 Polarization: -30.19 SS G_CDS: 0.51 Total: -29.68 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.03 Total: -2.93 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.77 -9.40 -37.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244115964.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.632 kcal (2) G-P(sol) polarization free energy of solvation -27.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds