Wall clock time and date at job start Tue Mar 31 2020 05:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86799 * 119.99890 * 2 1 4 4 H 1.48504 * 109.47158 * 270.00058 * 3 2 1 5 5 H 1.48500 * 109.47167 * 30.00110 * 3 2 1 6 6 H 1.48499 * 109.46645 * 150.00341 * 3 2 1 7 7 C 1.40046 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99511 * 164.28758 * 7 2 1 9 9 C 1.41529 * 119.99929 * 344.29182 * 7 2 1 10 10 C 1.41152 * 120.98256 * 155.06650 * 9 7 2 11 11 C 1.37725 * 119.07647 * 180.02562 * 10 9 7 12 12 N 1.31930 * 121.15984 * 359.71172 * 11 10 9 13 13 C 1.32807 * 122.20256 * 0.58014 * 12 11 10 14 14 C 1.48318 * 119.61553 * 179.70096 * 13 12 11 15 15 C 1.39597 * 120.13355 * 132.45858 * 14 13 12 16 16 F 1.35098 * 120.09335 * 0.04309 * 15 14 13 17 17 C 1.38260 * 119.81612 * 180.29911 * 15 14 13 18 18 C 1.38288 * 120.09513 * 359.47025 * 17 15 14 19 19 C 1.38329 * 120.27620 * 0.25819 * 18 17 15 20 20 C 1.38023 * 120.18151 * 0.02562 * 19 18 17 21 21 C 1.50699 * 120.04971 * 180.02562 * 20 19 18 22 22 C 1.52999 * 117.49997 * 3.79109 * 21 20 19 23 23 C 1.52999 * 117.49812 * 295.12661 * 21 20 19 24 24 C 1.38929 * 120.76770 * 359.42618 * 13 12 11 25 25 H 0.96998 * 119.99740 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.46338 * 359.97438 * 10 9 7 27 27 H 1.07998 * 119.41931 * 180.02562 * 11 10 9 28 28 H 1.07999 * 119.94871 * 179.74952 * 17 15 14 29 29 H 1.07994 * 119.85872 * 180.22967 * 18 17 15 30 30 H 1.08005 * 119.90741 * 179.97438 * 19 18 17 31 31 H 1.09002 * 115.54994 * 149.45823 * 21 20 19 32 32 H 1.08998 * 117.49792 * 359.97438 * 22 21 20 33 33 H 1.09001 * 117.49923 * 145.02239 * 22 21 20 34 34 H 1.08994 * 117.49668 * 214.97862 * 23 21 20 35 35 H 1.08994 * 117.49851 * 359.97438 * 23 21 20 36 36 H 1.07996 * 120.62152 * 180.25021 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4388 2.6527 0.7001 6 1 3.5390 1.4401 0.7000 7 6 2.0076 -1.2129 -0.0005 8 1 3.0573 -1.2302 -0.2538 9 6 1.3395 -2.4158 0.3308 10 6 1.8094 -3.6611 -0.1391 11 6 1.1286 -4.8072 0.2069 12 7 0.0540 -4.7585 0.9707 13 6 -0.4333 -3.6135 1.4347 14 6 -1.6493 -3.6250 2.2838 15 6 -1.6796 -2.8968 3.4744 16 9 -0.6012 -2.1784 3.8567 17 6 -2.8144 -2.9171 4.2640 18 6 -3.9203 -3.6478 3.8700 19 6 -3.8966 -4.3663 2.6882 20 6 -2.7677 -4.3588 1.8941 21 6 -2.7454 -5.1421 0.6068 22 6 -4.0343 -5.8534 0.1902 23 6 -2.8434 -6.6657 0.7053 24 6 0.1860 -2.4057 1.1386 25 1 -0.4850 0.8400 0.0004 26 1 2.6901 -3.7144 -0.7619 27 1 1.4835 -5.7630 -0.1491 28 1 -2.8387 -2.3577 5.1876 29 1 -4.8060 -3.6580 4.4879 30 1 -4.7636 -4.9353 2.3864 31 1 -2.1206 -4.7280 -0.1846 32 1 -4.8983 -5.7552 0.8474 33 1 -4.2573 -5.9077 -0.8754 34 1 -2.2835 -7.2540 -0.0217 35 1 -2.9236 -7.1016 1.7010 36 1 -0.2100 -1.4763 1.5205 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244119993.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:59 Heat of formation + Delta-G solvation = 25.708360 kcal Electronic energy + Delta-G solvation = -21560.103722 eV Core-core repulsion = 18309.681263 eV Total energy + Delta-G solvation = -3250.422459 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.107 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.28508 -39.43374 -37.94579 -36.19876 -34.15878 -31.96627 -30.53142 -29.86906 -28.27600 -25.98920 -23.72084 -23.05529 -22.01711 -21.57474 -20.39174 -19.92482 -17.65479 -16.71377 -16.19287 -15.69534 -15.28556 -15.10550 -14.91587 -14.32981 -14.16131 -14.10543 -13.79383 -13.03004 -12.71062 -12.46668 -12.38706 -11.98462 -11.80976 -11.63343 -11.46051 -11.19292 -11.06539 -10.93470 -10.63556 -10.33627 -10.24920 -10.01887 -9.84524 -9.43984 -8.66454 -8.19863 -8.00925 -7.99269 -7.34024 -6.86870 -4.61372 1.44113 1.54381 2.70998 2.79953 3.01678 3.06006 3.21482 3.84470 3.85893 4.33660 4.57812 4.66451 4.92132 5.09507 5.15938 5.23872 5.35880 5.41623 5.53051 5.65319 5.78022 5.87719 5.97789 6.10851 6.22406 6.36508 6.40908 6.44350 6.54221 6.64226 6.71555 6.84954 6.90743 6.95174 7.11146 7.24241 7.33299 7.42014 7.82466 8.06222 8.39463 8.69438 8.71347 9.51981 10.05351 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.017465 B = 0.006126 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.839733 B = 4569.477236 C = 5384.611689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.077 3.923 3 Si 0.912 3.088 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.454 4.454 8 H 0.082 0.918 9 C 0.124 3.876 10 C -0.271 4.271 11 C 0.099 3.901 12 N -0.549 5.549 13 C 0.130 3.870 14 C -0.031 4.031 15 C 0.111 3.889 16 F -0.131 7.131 17 C -0.166 4.166 18 C -0.100 4.100 19 C -0.141 4.141 20 C -0.003 4.003 21 C -0.088 4.088 22 C -0.192 4.192 23 C -0.151 4.151 24 C -0.174 4.174 25 H 0.284 0.716 26 H 0.101 0.899 27 H 0.122 0.878 28 H 0.130 0.870 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.116 0.884 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.468 -4.825 3.699 9.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.485 4.485 8 H 0.100 0.900 9 C 0.116 3.884 10 C -0.294 4.294 11 C -0.057 4.057 12 N -0.264 5.264 13 C 0.000 4.000 14 C -0.033 4.033 15 C 0.091 3.909 16 F -0.110 7.110 17 C -0.184 4.184 18 C -0.118 4.118 19 C -0.159 4.159 20 C -0.004 4.004 21 C -0.106 4.106 22 C -0.229 4.229 23 C -0.188 4.188 24 C -0.197 4.197 25 H 0.095 0.905 26 H 0.119 0.881 27 H 0.140 0.860 28 H 0.148 0.852 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.134 0.866 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.060 -5.429 3.926 10.481 hybrid contribution 1.085 1.829 -0.238 2.140 sum -6.975 -3.599 3.689 8.672 Atomic orbital electron populations 1.69751 1.07721 1.29700 1.33852 1.25981 0.94791 1.01602 0.91908 0.86252 0.80658 0.80219 0.79334 1.19308 1.19889 1.18282 1.19587 0.97503 0.90613 1.40840 0.89961 1.17767 0.90574 0.92455 0.87594 1.21920 1.04813 0.94045 1.08609 1.21820 0.92067 0.96641 0.95169 1.67416 1.14963 1.27927 1.16056 1.18970 0.93461 0.90260 0.97349 1.18603 0.94447 0.97061 0.93188 1.17713 0.84466 0.94503 0.94189 1.91513 1.53404 1.75351 1.90700 1.20948 0.92974 1.03554 1.00966 1.20822 0.97502 0.96926 0.96564 1.20957 0.98124 1.01549 0.95231 1.18997 0.91769 0.95001 0.94599 1.20781 0.99756 0.93663 0.96418 1.23133 0.92431 1.05972 1.01361 1.22802 1.00563 0.93253 1.02213 1.22235 0.99092 0.96966 1.01382 0.90504 0.88090 0.86048 0.85198 0.85600 0.85660 0.86585 0.88857 0.88910 0.88795 0.89145 0.85334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.16 10.93 55.55 0.61 -19.55 16 2 C 0.08 1.91 5.21 -17.34 -0.09 1.82 16 3 Si 0.91 18.44 29.59 -169.99 -5.03 13.41 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 7 C -0.45 -11.91 9.12 -37.65 -0.34 -12.26 16 8 H 0.08 2.05 7.89 -52.49 -0.41 1.64 16 9 C 0.12 3.31 5.59 -106.56 -0.60 2.72 16 10 C -0.27 -6.57 9.90 -38.66 -0.38 -6.95 16 11 C 0.10 2.25 11.15 -17.70 -0.20 2.05 16 12 N -0.55 -12.95 8.63 -9.95 -0.09 -13.03 16 13 C 0.13 3.17 5.45 -83.04 -0.45 2.72 16 14 C -0.03 -0.67 5.61 -104.84 -0.59 -1.26 16 15 C 0.11 2.23 7.12 -39.07 -0.28 1.95 16 16 F -0.13 -2.86 15.65 2.25 0.04 -2.83 16 17 C -0.17 -2.63 10.02 -39.55 -0.40 -3.03 16 18 C -0.10 -1.39 10.04 -39.53 -0.40 -1.78 16 19 C -0.14 -2.10 9.35 -39.63 -0.37 -2.47 16 20 C 0.00 -0.05 5.61 -104.30 -0.59 -0.64 16 21 C -0.09 -1.53 4.70 -91.77 -0.43 -1.96 16 22 C -0.19 -2.56 9.87 -26.69 -0.26 -2.83 16 23 C -0.15 -2.21 10.21 -26.69 -0.27 -2.48 16 24 C -0.17 -4.61 7.52 -38.35 -0.29 -4.90 16 25 H 0.28 6.63 8.29 -40.82 -0.34 6.29 16 26 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 27 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 28 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 29 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.13 1.52 5.94 -52.48 -0.31 1.21 16 31 H 0.12 2.37 7.08 -51.93 -0.37 2.00 16 32 H 0.09 1.08 6.10 -51.93 -0.32 0.77 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.13 3.56 5.73 -52.49 -0.30 3.26 16 LS Contribution 310.29 15.07 4.68 4.68 Total: -1.00 -28.29 310.29 -9.54 -37.83 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -3.80 Total: 8.80 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -5.93 Total: -29.30 kcal Atomic # 7 Polarization: -33.10 SS G_CDS: 0.52 Total: -32.58 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.29 -9.54 -37.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244119993.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.536 kcal (2) G-P(sol) polarization free energy of solvation -28.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds