Wall clock time and date at job start Tue Mar 31 2020 05:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86799 * 119.99890 * 2 1 4 4 H 1.48504 * 109.47158 * 270.00058 * 3 2 1 5 5 H 1.48500 * 109.47167 * 30.00110 * 3 2 1 6 6 H 1.48499 * 109.46645 * 150.00341 * 3 2 1 7 7 C 1.40046 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99511 * 164.28758 * 7 2 1 9 9 C 1.41529 * 119.99929 * 344.29182 * 7 2 1 10 10 C 1.41152 * 120.98256 * 155.06650 * 9 7 2 11 11 C 1.37725 * 119.07647 * 180.02562 * 10 9 7 12 12 N 1.31930 * 121.15984 * 359.71172 * 11 10 9 13 13 C 1.32807 * 122.20256 * 0.58014 * 12 11 10 14 14 C 1.48318 * 119.61553 * 179.70096 * 13 12 11 15 15 C 1.39597 * 120.13355 * 132.45858 * 14 13 12 16 16 F 1.35098 * 120.09335 * 0.04309 * 15 14 13 17 17 C 1.38260 * 119.81612 * 180.29911 * 15 14 13 18 18 C 1.38288 * 120.09513 * 359.47025 * 17 15 14 19 19 C 1.38329 * 120.27620 * 0.25819 * 18 17 15 20 20 C 1.38023 * 120.18151 * 0.02562 * 19 18 17 21 21 C 1.50699 * 120.04971 * 180.02562 * 20 19 18 22 22 C 1.52999 * 117.49997 * 3.79109 * 21 20 19 23 23 C 1.52999 * 117.49812 * 295.12661 * 21 20 19 24 24 C 1.38929 * 120.76770 * 359.42618 * 13 12 11 25 25 H 0.96998 * 119.99740 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.46338 * 359.97438 * 10 9 7 27 27 H 1.07998 * 119.41931 * 180.02562 * 11 10 9 28 28 H 1.07999 * 119.94871 * 179.74952 * 17 15 14 29 29 H 1.07994 * 119.85872 * 180.22967 * 18 17 15 30 30 H 1.08005 * 119.90741 * 179.97438 * 19 18 17 31 31 H 1.09002 * 115.54994 * 149.45823 * 21 20 19 32 32 H 1.08998 * 117.49792 * 359.97438 * 22 21 20 33 33 H 1.09001 * 117.49923 * 145.02239 * 22 21 20 34 34 H 1.08994 * 117.49668 * 214.97862 * 23 21 20 35 35 H 1.08994 * 117.49851 * 359.97438 * 23 21 20 36 36 H 1.07996 * 120.62152 * 180.25021 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4388 2.6527 0.7001 6 1 3.5390 1.4401 0.7000 7 6 2.0076 -1.2129 -0.0005 8 1 3.0573 -1.2302 -0.2538 9 6 1.3395 -2.4158 0.3308 10 6 1.8094 -3.6611 -0.1391 11 6 1.1286 -4.8072 0.2069 12 7 0.0540 -4.7585 0.9707 13 6 -0.4333 -3.6135 1.4347 14 6 -1.6493 -3.6250 2.2838 15 6 -1.6796 -2.8968 3.4744 16 9 -0.6012 -2.1784 3.8567 17 6 -2.8144 -2.9171 4.2640 18 6 -3.9203 -3.6478 3.8700 19 6 -3.8966 -4.3663 2.6882 20 6 -2.7677 -4.3588 1.8941 21 6 -2.7454 -5.1421 0.6068 22 6 -4.0343 -5.8534 0.1902 23 6 -2.8434 -6.6657 0.7053 24 6 0.1860 -2.4057 1.1386 25 1 -0.4850 0.8400 0.0004 26 1 2.6901 -3.7144 -0.7619 27 1 1.4835 -5.7630 -0.1491 28 1 -2.8387 -2.3577 5.1876 29 1 -4.8060 -3.6580 4.4879 30 1 -4.7636 -4.9353 2.3864 31 1 -2.1206 -4.7280 -0.1846 32 1 -4.8983 -5.7552 0.8474 33 1 -4.2573 -5.9077 -0.8754 34 1 -2.2835 -7.2540 -0.0217 35 1 -2.9236 -7.1016 1.7010 36 1 -0.2100 -1.4763 1.5205 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244119993.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:58 Heat of formation + Delta-G solvation = 12.169703 kcal Electronic energy + Delta-G solvation = -21560.690802 eV Core-core repulsion = 18309.681263 eV Total energy + Delta-G solvation = -3251.009539 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.107 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.85521 -40.88988 -39.63859 -37.40834 -36.05224 -33.55139 -32.42411 -31.15351 -29.90925 -27.92311 -25.04973 -24.56496 -23.41800 -23.16908 -22.01745 -21.27522 -19.43107 -18.14254 -17.71650 -17.29766 -16.88411 -16.71019 -16.24148 -16.11915 -15.91262 -15.62187 -15.11843 -14.47036 -14.42098 -14.15987 -13.99521 -13.39834 -13.24161 -13.17498 -12.96247 -12.82728 -12.70503 -12.19673 -12.05235 -12.03003 -11.66223 -11.42870 -11.29107 -11.19959 -10.25469 -9.95366 -9.85520 -9.48016 -9.05543 -8.74472 -6.61012 0.00893 0.24509 0.94778 0.95516 1.32897 1.46614 1.52065 2.13465 2.55735 2.72597 3.12095 3.33168 3.50806 3.63936 3.75242 4.00527 4.07007 4.14622 4.24435 4.31630 4.41721 4.50001 4.73202 4.81680 4.88689 4.92331 4.97464 5.06986 5.12463 5.15693 5.19729 5.29751 5.32418 5.34981 5.43333 5.48666 5.69272 5.86356 5.99288 6.14256 6.45189 6.74033 6.75913 7.63239 8.20360 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.017465 B = 0.006126 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.839733 B = 4569.477236 C = 5384.611689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.035 3.965 3 Si 0.987 3.013 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.257 1.257 7 C -0.489 4.489 8 H 0.085 0.915 9 C 0.093 3.907 10 C -0.288 4.288 11 C 0.097 3.903 12 N -0.549 5.549 13 C 0.136 3.864 14 C -0.081 4.081 15 C 0.077 3.923 16 F -0.155 7.155 17 C -0.162 4.162 18 C -0.076 4.076 19 C -0.132 4.132 20 C -0.010 4.010 21 C -0.125 4.125 22 C -0.158 4.158 23 C -0.145 4.145 24 C -0.206 4.206 25 H 0.291 0.709 26 H 0.115 0.885 27 H 0.159 0.841 28 H 0.158 0.842 29 H 0.179 0.821 30 H 0.165 0.835 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.072 -5.650 4.657 12.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.182 4.182 3 Si 0.807 3.193 4 H -0.180 1.180 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.520 4.520 8 H 0.103 0.897 9 C 0.085 3.915 10 C -0.310 4.310 11 C -0.058 4.058 12 N -0.263 5.263 13 C 0.004 3.996 14 C -0.083 4.083 15 C 0.057 3.943 16 F -0.134 7.134 17 C -0.180 4.180 18 C -0.094 4.094 19 C -0.150 4.150 20 C -0.011 4.011 21 C -0.144 4.144 22 C -0.194 4.194 23 C -0.182 4.182 24 C -0.229 4.229 25 H 0.102 0.898 26 H 0.133 0.867 27 H 0.176 0.824 28 H 0.175 0.825 29 H 0.197 0.803 30 H 0.182 0.818 31 H 0.090 0.910 32 H 0.140 0.860 33 H 0.122 0.878 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.664 -6.276 4.875 13.299 hybrid contribution 1.767 1.952 -0.516 2.683 sum -8.897 -4.324 4.358 10.810 Atomic orbital electron populations 1.69831 1.09309 1.30978 1.34157 1.26919 0.95545 1.04970 0.90771 0.85128 0.79037 0.75268 0.79880 1.17983 1.18991 1.18061 1.19889 0.97866 0.91707 1.42532 0.89710 1.18217 0.91273 0.93837 0.88162 1.22144 1.05688 0.93894 1.09310 1.22416 0.91413 0.97761 0.94241 1.67571 1.15052 1.27562 1.16139 1.19434 0.94090 0.89578 0.96456 1.18764 0.94721 1.00504 0.94304 1.18231 0.85467 0.95326 0.95231 1.91442 1.54902 1.76103 1.90923 1.21346 0.91879 1.03613 1.01195 1.21446 0.97991 0.93912 0.96050 1.21404 0.97693 1.01138 0.94754 1.19242 0.91950 0.94488 0.95405 1.20624 1.02904 0.95371 0.95483 1.23270 0.91626 1.01898 1.02638 1.22864 1.01256 0.91185 1.02892 1.22125 1.00455 0.97088 1.03217 0.89847 0.86691 0.82369 0.82461 0.80335 0.81766 0.91045 0.85990 0.87844 0.88857 0.88162 0.87546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.21 10.93 21.84 0.24 -43.97 16 2 C 0.03 1.79 5.21 85.29 0.44 2.23 16 3 Si 0.99 38.81 29.59 68.60 2.03 40.84 16 4 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 5 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 6 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 7 C -0.49 -27.11 9.12 23.52 0.21 -26.90 16 8 H 0.08 4.45 7.89 -2.91 -0.02 4.43 16 9 C 0.09 5.29 5.59 -21.12 -0.12 5.17 16 10 C -0.29 -14.64 9.90 22.86 0.23 -14.41 16 11 C 0.10 4.55 11.15 84.56 0.94 5.49 16 12 N -0.55 -26.94 8.63 -185.39 -1.60 -28.54 16 13 C 0.14 7.01 5.45 41.85 0.23 7.24 16 14 C -0.08 -3.61 5.61 -20.00 -0.11 -3.72 16 15 C 0.08 3.18 7.12 22.60 0.16 3.34 16 16 F -0.15 -7.21 15.65 44.97 0.70 -6.51 16 17 C -0.16 -4.80 10.02 22.29 0.22 -4.57 16 18 C -0.08 -1.76 10.04 22.30 0.22 -1.54 16 19 C -0.13 -3.43 9.35 22.24 0.21 -3.23 16 20 C -0.01 -0.36 5.61 -19.65 -0.11 -0.47 16 21 C -0.13 -4.31 4.70 -11.54 -0.05 -4.36 16 22 C -0.16 -3.70 9.87 30.62 0.30 -3.40 16 23 C -0.15 -3.94 10.21 30.62 0.31 -3.63 16 24 C -0.21 -11.75 7.52 23.07 0.17 -11.58 16 25 H 0.29 14.19 8.29 -92.71 -0.77 13.42 16 26 H 0.12 5.33 8.06 -2.91 -0.02 5.31 16 27 H 0.16 6.06 8.06 -2.91 -0.02 6.03 16 28 H 0.16 3.70 8.06 -2.91 -0.02 3.68 16 29 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 30 H 0.17 2.95 5.94 -2.91 -0.02 2.93 16 31 H 0.07 3.07 7.08 -2.39 -0.02 3.06 16 32 H 0.12 2.15 6.10 -2.39 -0.01 2.14 16 33 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.09 2.50 8.14 -2.39 -0.02 2.49 16 35 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.11 6.42 5.73 -2.91 -0.02 6.40 16 Total: -1.00 -68.59 310.29 5.75 -62.84 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: 1.11 Total: 29.66 kcal Atomic # 6 Polarization: -57.59 SS G_CDS: 3.27 Total: -54.33 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -1.36 Total: -72.51 kcal Atomic # 9 Polarization: -7.21 SS G_CDS: 0.70 Total: -6.51 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -68.59 5.75 -62.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244119993.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.012 kcal (2) G-P(sol) polarization free energy of solvation -68.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds