Wall clock time and date at job start Tue Mar 31 2020 05:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30799 * 1 3 3 Si 1.86804 * 119.99666 * 2 1 4 4 H 1.48504 * 109.46925 * 275.52205 * 3 2 1 5 5 H 1.48499 * 109.47298 * 35.52120 * 3 2 1 6 6 H 1.48503 * 109.47103 * 155.52507 * 3 2 1 7 7 C 1.40041 * 120.00315 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99908 * 339.87040 * 7 2 1 9 9 C 1.40824 * 120.00282 * 159.87001 * 7 2 1 10 10 C 1.40789 * 120.29706 * 332.58686 * 9 7 2 11 11 C 1.36354 * 120.01956 * 180.02562 * 10 9 7 12 12 C 1.39208 * 120.64801 * 359.97438 * 11 10 9 13 13 F 1.35101 * 119.69109 * 180.02562 * 12 11 10 14 14 C 1.38402 * 120.60847 * 359.72602 * 12 11 10 15 15 C 1.39036 * 119.95719 * 0.55085 * 14 12 11 16 16 C 1.47900 * 120.31693 * 179.72154 * 15 14 12 17 17 C 1.39636 * 120.56635 * 64.70904 * 16 15 14 18 18 N 1.31660 * 120.56177 * 180.02562 * 17 16 15 19 19 C 1.31959 * 121.87667 * 359.97438 * 18 17 16 20 20 C 1.38341 * 121.08967 * 359.72142 * 19 18 17 21 21 C 1.38369 * 119.31363 * 0.55334 * 20 19 18 22 22 C 1.50705 * 120.85412 * 179.73534 * 21 20 19 23 23 C 1.52999 * 117.52002 * 351.00611 * 22 21 20 24 24 C 1.52996 * 60.00108 * 107.48435 * 23 22 21 25 25 H 0.96996 * 120.00372 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.99341 * 0.04721 * 10 9 7 27 27 H 1.08002 * 119.67648 * 179.97438 * 11 10 9 28 28 H 1.08004 * 120.02174 * 180.27452 * 14 12 11 29 29 H 1.08010 * 119.72034 * 359.97438 * 17 16 15 30 30 H 1.07999 * 119.45415 * 180.02562 * 19 18 17 31 31 H 1.07998 * 120.34318 * 180.29188 * 20 19 18 32 32 H 1.09001 * 115.54652 * 205.30189 * 22 21 20 33 33 H 1.09003 * 117.49472 * 214.97467 * 23 22 21 34 34 H 1.08997 * 117.49702 * 359.97438 * 23 22 21 35 35 H 1.09004 * 117.49707 * 252.51016 * 24 23 22 36 36 H 1.08991 * 117.50115 * 107.49086 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 2.3727 2.1138 -1.3936 5 1 1.5025 2.6162 0.8134 6 1 3.5930 1.4094 0.5801 7 6 2.0083 -1.2128 0.0005 8 1 1.5178 -2.1194 0.3228 9 6 3.3520 -1.2502 -0.4191 10 6 3.8344 -0.3031 -1.3424 11 6 5.1363 -0.3449 -1.7453 12 6 6.0009 -1.3180 -1.2520 13 9 7.2874 -1.3412 -1.6640 14 6 5.5563 -2.2581 -0.3387 15 6 4.2322 -2.2425 0.0849 16 6 3.7471 -3.2471 1.0559 17 6 4.2523 -3.2787 2.3573 18 7 3.8207 -4.1733 3.2215 19 6 2.9042 -5.0668 2.9004 20 6 2.3495 -5.0976 1.6335 21 6 2.7730 -4.1824 0.6861 22 6 2.1965 -4.1886 -0.7064 23 6 1.2937 -5.3619 -1.0925 24 6 0.6876 -3.9787 -0.8473 25 1 -0.4850 0.8400 -0.0004 26 1 3.1731 0.4571 -1.7315 27 1 5.5004 0.3841 -2.4541 28 1 6.2364 -3.0062 0.0412 29 1 5.0041 -2.5636 2.6573 30 1 2.5783 -5.7826 3.6405 31 1 1.5967 -5.8312 1.3852 32 1 2.8375 -3.7700 -1.4823 33 1 1.3408 -5.7153 -2.1226 34 1 1.1169 -6.1299 -0.3396 35 1 0.1116 -3.8366 0.0672 36 1 0.3358 -3.4222 -1.7158 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244281293.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:29 Heat of formation + Delta-G solvation = 15.970144 kcal Electronic energy + Delta-G solvation = -21890.054133 eV Core-core repulsion = 18639.209394 eV Total energy + Delta-G solvation = -3250.844740 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.107 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.37025 -41.37621 -39.28346 -38.02910 -35.51513 -33.87016 -32.34810 -32.03988 -30.21986 -26.85674 -25.47731 -24.78239 -23.24498 -23.12322 -21.93599 -21.35341 -19.41643 -18.49031 -17.71112 -17.41430 -16.93630 -16.60761 -16.11201 -15.99050 -15.71578 -15.51488 -15.02155 -14.85497 -14.55366 -14.48574 -14.26020 -13.80053 -13.54257 -13.08086 -12.71543 -12.55176 -12.48509 -12.35157 -12.16667 -12.00557 -11.71401 -11.45164 -11.11428 -11.04936 -10.43752 -9.98227 -9.94153 -9.52215 -9.21701 -8.95039 -6.42106 0.16582 0.38507 0.60120 0.77405 1.25419 1.38290 1.46377 2.07736 2.46043 2.84038 3.19168 3.38409 3.61161 3.68641 3.78449 3.97345 4.03824 4.12895 4.17403 4.24007 4.34825 4.36752 4.48165 4.69629 4.78692 4.83531 4.91000 4.96324 5.01476 5.15956 5.21418 5.31261 5.35034 5.35589 5.53515 5.64951 5.65257 5.88827 5.95859 6.18747 6.38256 6.69110 6.79457 7.13763 8.07698 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.012020 B = 0.008828 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.941016 B = 3170.796312 C = 4150.846771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.059 3.941 3 Si 0.942 3.058 4 H -0.257 1.257 5 H -0.281 1.281 6 H -0.257 1.257 7 C -0.442 4.442 8 H 0.102 0.898 9 C 0.090 3.910 10 C -0.231 4.231 11 C -0.097 4.097 12 C -0.059 4.059 13 F -0.167 7.167 14 C -0.085 4.085 15 C -0.144 4.144 16 C -0.057 4.057 17 C 0.087 3.913 18 N -0.507 5.507 19 C 0.080 3.920 20 C -0.174 4.174 21 C -0.005 4.005 22 C -0.120 4.120 23 C -0.154 4.154 24 C -0.146 4.146 25 H 0.295 0.705 26 H 0.110 0.890 27 H 0.128 0.872 28 H 0.123 0.877 29 H 0.153 0.847 30 H 0.184 0.816 31 H 0.159 0.841 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.082 0.918 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.975 -6.490 -0.074 6.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.160 4.160 3 Si 0.767 3.233 4 H -0.183 1.183 5 H -0.208 1.208 6 H -0.181 1.181 7 C -0.469 4.469 8 H 0.120 0.880 9 C 0.087 3.913 10 C -0.250 4.250 11 C -0.116 4.116 12 C -0.078 4.078 13 F -0.146 7.146 14 C -0.104 4.104 15 C -0.147 4.147 16 C -0.059 4.059 17 C -0.069 4.069 18 N -0.216 5.216 19 C -0.076 4.076 20 C -0.193 4.193 21 C -0.013 4.013 22 C -0.138 4.138 23 C -0.191 4.191 24 C -0.183 4.183 25 H 0.106 0.894 26 H 0.128 0.872 27 H 0.146 0.854 28 H 0.141 0.859 29 H 0.170 0.830 30 H 0.201 0.799 31 H 0.176 0.824 32 H 0.110 0.890 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.101 0.899 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.061 -6.404 0.786 6.538 hybrid contribution 0.054 1.239 -1.040 1.618 sum 1.114 -5.165 -0.254 5.290 Atomic orbital electron populations 1.69674 1.08783 1.31608 1.33671 1.26716 0.95160 1.03545 0.90607 0.85846 0.80057 0.77987 0.79434 1.18293 1.20792 1.18071 1.19821 0.94135 0.96947 1.36000 0.88044 1.17776 0.92625 0.90917 0.89986 1.20697 0.95915 1.04284 1.04098 1.20601 0.93505 0.97578 0.99893 1.17195 0.79314 1.03922 1.07395 1.91316 1.36126 1.96878 1.90278 1.20787 0.95370 0.97605 0.96667 1.18254 0.92285 1.01020 1.03105 1.19501 0.97029 0.94782 0.94594 1.22955 0.98833 0.96400 0.88759 1.67569 1.13193 1.04721 1.36136 1.23175 0.92470 0.96336 0.95630 1.22176 1.02464 1.00562 0.94147 1.19859 0.93568 0.92983 0.94851 1.20748 0.93856 1.05351 0.93872 1.23272 1.01209 0.90966 1.03652 1.22687 0.93445 0.99506 1.02664 0.89374 0.87235 0.85392 0.85890 0.82964 0.79894 0.82373 0.89038 0.87141 0.86637 0.89924 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.44 13.93 21.84 0.30 -39.13 16 2 C 0.06 2.82 5.39 85.28 0.46 3.28 16 3 Si 0.94 39.40 24.51 68.60 1.68 41.09 16 4 H -0.26 -10.21 6.67 99.48 0.66 -9.55 16 5 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.26 -11.26 6.89 99.48 0.69 -10.58 16 7 C -0.44 -21.37 8.16 23.34 0.19 -21.18 16 8 H 0.10 5.03 4.00 -2.91 -0.01 5.02 16 9 C 0.09 4.16 4.63 -21.12 -0.10 4.06 16 10 C -0.23 -10.22 7.16 22.45 0.16 -10.06 16 11 C -0.10 -3.99 9.94 22.06 0.22 -3.77 16 12 C -0.06 -2.43 7.31 22.54 0.16 -2.27 16 13 F -0.17 -6.67 17.26 44.97 0.78 -5.90 16 14 C -0.09 -3.48 9.71 22.50 0.22 -3.26 16 15 C -0.14 -6.19 4.41 -19.62 -0.09 -6.27 16 16 C -0.06 -2.27 4.67 -19.95 -0.09 -2.36 16 17 C 0.09 3.27 10.92 85.06 0.93 4.20 16 18 N -0.51 -17.84 10.35 -194.67 -2.01 -19.86 16 19 C 0.08 2.37 11.17 84.70 0.95 3.32 16 20 C -0.17 -5.18 9.37 22.33 0.21 -4.97 16 21 C 0.00 -0.18 4.67 -19.40 -0.09 -0.27 16 22 C -0.12 -4.16 4.16 -11.54 -0.05 -4.21 16 23 C -0.15 -4.01 9.88 30.59 0.30 -3.70 16 24 C -0.15 -4.88 8.42 30.59 0.26 -4.62 16 25 H 0.30 13.03 8.30 -92.71 -0.77 12.26 16 26 H 0.11 4.77 4.54 -2.91 -0.01 4.76 16 27 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 28 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 29 H 0.15 5.43 8.06 -2.91 -0.02 5.41 16 30 H 0.18 3.87 8.06 -2.91 -0.02 3.85 16 31 H 0.16 3.61 6.17 -2.91 -0.02 3.59 16 32 H 0.09 3.59 7.27 -2.39 -0.02 3.58 16 33 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.12 2.44 6.27 -2.39 -0.01 2.43 16 35 H 0.08 2.94 8.06 -2.39 -0.02 2.92 16 36 H 0.09 3.04 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -53.70 299.81 5.45 -48.25 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 1.06 Total: 27.65 kcal Atomic # 6 Polarization: -55.74 SS G_CDS: 3.64 Total: -52.10 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: -1.71 Total: -58.99 kcal Atomic # 9 Polarization: -6.67 SS G_CDS: 0.78 Total: -5.90 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 1.68 Total: 41.09 kcal Total: -53.70 5.45 -48.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244281293.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.222 kcal (2) G-P(sol) polarization free energy of solvation -53.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds