Wall clock time and date at job start Tue Mar 31 2020 06:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47446 * 2 1 4 4 H 1.08998 * 109.46996 * 184.42096 * 3 2 1 5 5 C 1.50700 * 109.46920 * 304.41967 * 3 2 1 6 6 H 1.08008 * 119.99698 * 115.15932 * 5 3 2 7 7 C 1.37873 * 120.00235 * 295.15891 * 5 3 2 8 8 N 1.31511 * 119.99922 * 352.99060 * 7 5 3 9 9 Si 1.86800 * 120.00060 * 172.98821 * 7 5 3 10 10 H 1.48505 * 109.47204 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47011 * 299.99933 * 9 7 5 12 12 H 1.48500 * 109.46955 * 59.99811 * 9 7 5 13 13 N 1.46899 * 109.47223 * 64.42118 * 3 2 1 14 14 C 1.46907 * 110.99863 * 85.23338 * 13 3 2 15 15 C 1.50698 * 109.47065 * 185.44514 * 14 13 3 16 16 O 1.21278 * 119.99793 * 359.97438 * 15 14 13 17 17 C 1.46975 * 119.99985 * 180.02562 * 15 14 13 18 18 C 1.39943 * 120.18543 * 359.71533 * 17 15 14 19 19 C 1.37983 * 119.82922 * 179.79182 * 18 17 15 20 20 F 1.35088 * 119.90618 * 180.25441 * 19 18 17 21 21 C 1.38718 * 120.19345 * 0.49454 * 19 18 17 22 22 C 1.38209 * 120.37869 * 359.73778 * 21 19 18 23 23 C 1.38272 * 120.17164 * 0.02562 * 22 21 19 24 24 F 1.35091 * 120.10248 * 179.97438 * 23 22 21 25 25 H 1.08997 * 109.47624 * 185.53619 * 1 2 3 26 26 H 1.09005 * 109.46765 * 305.53832 * 1 2 3 27 27 H 1.09001 * 109.46678 * 65.53055 * 1 2 3 28 28 H 1.08998 * 109.46951 * 239.99372 * 2 1 3 29 29 H 1.09008 * 109.46683 * 119.99759 * 2 1 3 30 30 H 0.96997 * 120.00125 * 356.27173 * 8 7 5 31 31 H 1.00899 * 111.00104 * 209.18254 * 13 3 2 32 32 H 1.08997 * 109.47204 * 305.44474 * 14 13 3 33 33 H 1.09004 * 109.46986 * 65.44623 * 14 13 3 34 34 H 1.08004 * 120.09025 * 0.02705 * 18 17 15 35 35 H 1.07998 * 119.81613 * 179.72120 * 21 19 18 36 36 H 1.07996 * 119.91958 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1272 1.4434 -0.0792 5 6 1.4504 2.1838 -1.1721 6 1 0.7762 3.0107 -1.0041 7 6 1.7714 1.8064 -2.4587 8 7 2.6951 0.8933 -2.6650 9 14 0.8942 2.5919 -3.9089 10 1 1.4182 2.0180 -5.1743 11 1 -0.5632 2.3247 -3.8097 12 1 1.1308 4.0579 -3.8954 13 7 1.6396 2.1035 1.2492 14 6 2.6071 1.8335 2.3213 15 6 2.0973 2.4131 3.6156 16 8 1.0332 2.9942 3.6422 17 6 2.8903 2.2751 4.8453 18 6 4.1165 1.6010 4.8200 19 6 4.8569 1.4795 5.9779 20 9 6.0432 0.8336 5.9541 21 6 4.3845 2.0143 7.1675 22 6 3.1724 2.6774 7.2030 23 6 2.4201 2.8124 6.0508 24 9 1.2353 3.4604 6.0872 25 1 -0.3634 -1.0228 0.0991 26 1 -0.3633 0.5974 0.8363 27 1 -0.3633 0.4257 -0.9354 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.1885 0.5245 -1.9157 31 1 1.5205 3.0959 1.1112 32 1 2.7364 0.7569 2.4313 33 1 3.5643 2.2908 2.0705 34 1 4.4841 1.1803 3.8957 35 1 4.9670 1.9117 8.0711 36 1 2.8115 3.0905 8.1333 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162335.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:35 Heat of formation + Delta-G solvation = -121.875420 kcal Electronic energy + Delta-G solvation = -21728.845798 eV Core-core repulsion = 18041.254401 eV Total energy + Delta-G solvation = -3687.591397 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.08997 -50.01313 -41.00777 -39.25059 -38.13759 -34.70091 -33.19489 -32.47316 -31.13794 -29.06205 -26.78038 -25.49762 -24.99432 -23.54672 -21.52614 -20.98845 -19.27932 -18.76726 -18.34847 -18.26700 -17.20746 -16.73620 -16.60270 -16.44790 -16.33945 -15.77838 -15.58905 -15.46152 -15.31990 -15.03833 -14.80395 -14.20651 -13.90451 -13.69973 -13.55575 -13.35669 -13.09671 -12.98894 -12.62640 -12.60351 -12.02656 -11.95837 -11.90314 -11.62598 -10.86264 -10.59000 -10.46301 -10.39045 -9.76896 -9.20147 -8.56558 -6.27285 -0.74624 -0.17710 1.15448 1.54995 1.61064 1.80432 2.28148 2.51865 2.61314 2.94694 3.03718 3.21865 3.40171 3.54941 3.75898 3.91148 4.10044 4.25249 4.33705 4.43114 4.46052 4.55299 4.71274 4.73469 4.78261 4.83695 4.90304 5.01016 5.17172 5.36914 5.49906 5.56931 5.68159 5.86300 6.06541 6.33882 6.47946 6.56073 6.76186 7.48911 8.81171 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.024673 B = 0.003832 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.570979 B = 7304.195466 C = 7867.073163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.101 4.101 3 C 0.208 3.792 4 H -0.025 1.025 5 C -0.601 4.601 6 H 0.044 0.956 7 C -0.018 4.018 8 N -0.931 5.931 9 Si 1.105 2.895 10 H -0.285 1.285 11 H -0.276 1.276 12 H -0.274 1.274 13 N -0.674 5.674 14 C 0.015 3.985 15 C 0.396 3.604 16 O -0.459 6.459 17 C -0.188 4.188 18 C -0.079 4.079 19 C 0.075 3.925 20 F -0.134 7.134 21 C -0.075 4.075 22 C -0.125 4.125 23 C 0.124 3.876 24 F -0.132 7.132 25 H 0.042 0.958 26 H 0.049 0.951 27 H 0.033 0.967 28 H 0.037 0.963 29 H 0.042 0.958 30 H 0.261 0.739 31 H 0.335 0.665 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.163 0.837 35 H 0.189 0.811 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.796 1.013 21.508 22.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.140 4.140 3 C 0.100 3.900 4 H -0.007 1.007 5 C -0.639 4.639 6 H 0.062 0.938 7 C -0.218 4.218 8 N -0.569 5.569 9 Si 0.928 3.072 10 H -0.210 1.210 11 H -0.202 1.202 12 H -0.200 1.200 13 N -0.304 5.304 14 C -0.115 4.115 15 C 0.274 3.726 16 O -0.334 6.334 17 C -0.190 4.190 18 C -0.098 4.098 19 C 0.055 3.945 20 F -0.112 7.112 21 C -0.093 4.093 22 C -0.143 4.143 23 C 0.104 3.896 24 F -0.110 7.110 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.152 0.848 32 H 0.131 0.869 33 H 0.090 0.910 34 H 0.180 0.820 35 H 0.206 0.794 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 4.681 0.780 20.056 20.610 hybrid contribution 0.905 0.490 0.993 1.430 sum 5.585 1.270 21.049 21.814 Atomic orbital electron populations 1.21319 0.95712 0.98910 1.00870 1.21404 0.97035 0.97289 0.98256 1.19125 0.91772 0.92462 0.86656 1.00738 1.22189 1.30590 1.18212 0.92957 0.93779 1.26875 0.96344 0.95783 1.02753 1.70904 1.22452 1.28341 1.35155 0.83068 0.75430 0.75585 0.73080 1.21019 1.20186 1.20000 1.60296 1.46931 1.16353 1.06856 1.22336 0.95500 1.03013 0.90613 1.22605 0.84517 0.76066 0.89446 1.90570 1.21897 1.33215 1.87684 1.20380 0.98334 1.06063 0.94254 1.21437 0.91990 0.96602 0.99797 1.17630 0.83410 0.98506 0.94932 1.91552 1.43324 1.79144 1.97193 1.21626 0.95367 0.94122 0.98195 1.21327 0.94257 1.00872 0.97869 1.18357 0.82552 0.94144 0.94563 1.91563 1.44084 1.78310 1.97055 0.93892 0.93189 0.94772 0.94444 0.93962 0.92888 0.84758 0.86884 0.90995 0.81990 0.79392 0.79873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.93 9.43 71.98 0.68 -4.25 16 2 C -0.10 -4.68 5.51 30.59 0.17 -4.51 16 3 C 0.21 10.16 1.93 44.17 0.09 10.24 16 4 H -0.02 -1.29 7.22 -2.39 -0.02 -1.30 16 5 C -0.60 -32.82 7.13 25.60 0.18 -32.64 16 6 H 0.04 2.46 7.67 -2.91 -0.02 2.43 16 7 C -0.02 -0.99 5.26 84.65 0.45 -0.55 16 8 N -0.93 -54.62 12.94 21.45 0.28 -54.34 16 9 Si 1.11 50.03 29.91 68.60 2.05 52.08 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 13 N -0.67 -28.78 5.17 -499.45 -2.58 -31.36 16 14 C 0.02 0.50 4.55 85.56 0.39 0.89 16 15 C 0.40 12.71 7.16 27.98 0.20 12.91 16 16 O -0.46 -18.21 15.31 -3.02 -0.05 -18.26 16 17 C -0.19 -4.58 5.87 -20.12 -0.12 -4.70 16 18 C -0.08 -1.51 9.44 22.62 0.21 -1.29 16 19 C 0.07 1.16 7.29 22.32 0.16 1.32 16 20 F -0.13 -2.24 17.26 44.97 0.78 -1.47 16 21 C -0.07 -0.79 10.01 22.38 0.22 -0.56 16 22 C -0.12 -1.63 10.01 22.27 0.22 -1.40 16 23 C 0.12 2.77 7.29 22.73 0.17 2.94 16 24 F -0.13 -3.74 15.55 44.97 0.70 -3.04 16 25 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.05 2.23 7.59 -2.38 -0.02 2.21 16 27 H 0.03 1.65 7.31 -2.39 -0.02 1.63 16 28 H 0.04 1.89 6.35 -2.39 -0.02 1.88 16 29 H 0.04 1.72 7.32 -2.38 -0.02 1.71 16 30 H 0.26 15.31 6.03 -92.71 -0.56 14.75 16 31 H 0.33 15.02 8.15 -89.69 -0.73 14.29 16 32 H 0.11 3.41 7.23 -2.39 -0.02 3.40 16 33 H 0.07 2.18 8.09 -2.39 -0.02 2.16 16 34 H 0.16 2.76 7.05 -2.91 -0.02 2.74 16 35 H 0.19 0.59 8.06 -2.91 -0.02 0.57 16 36 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -67.92 312.62 4.80 -63.12 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.60 Total: 14.86 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: 3.02 Total: -21.60 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -2.31 Total: -85.71 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.05 Total: -18.26 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 1.48 Total: -4.51 kcal Atomic # 14 Polarization: 50.03 SS G_CDS: 2.05 Total: 52.08 kcal Total: -67.92 4.80 -63.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162335.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.751 kcal (2) G-P(sol) polarization free energy of solvation -67.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds