Wall clock time and date at job start Tue Mar 31 2020 05:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38257 * 119.99964 * 2 1 4 4 C 1.38220 * 119.99675 * 179.78669 * 3 2 1 5 5 C 1.38255 * 119.99724 * 0.43643 * 4 3 2 6 6 C 1.38208 * 120.00141 * 359.81359 * 5 4 3 7 7 C 1.38212 * 119.99842 * 180.26216 * 2 1 3 8 8 C 1.50702 * 120.00061 * 359.97438 * 7 2 1 9 9 F 1.39895 * 109.47007 * 189.95273 * 8 7 2 10 10 F 1.39905 * 109.46472 * 309.94827 * 8 7 2 11 11 C 1.50700 * 109.47438 * 69.94802 * 8 7 2 12 12 O 1.21279 * 119.99590 * 20.27330 * 11 8 7 13 13 N 1.34777 * 119.99831 * 200.27295 * 11 8 7 14 14 C 1.46501 * 120.00003 * 0.02562 * 13 11 8 15 15 C 1.46501 * 119.99924 * 180.02562 * 13 11 8 16 16 C 1.50701 * 109.47026 * 89.99864 * 15 13 11 17 17 H 1.07996 * 120.00334 * 359.97438 * 16 15 13 18 18 C 1.37875 * 119.99901 * 180.02562 * 16 15 13 19 19 N 1.31510 * 120.00488 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99859 * 359.97438 * 18 16 15 21 21 H 1.48508 * 109.47202 * 90.00240 * 20 18 16 22 22 H 1.48498 * 109.47383 * 209.99972 * 20 18 16 23 23 H 1.48495 * 109.47188 * 330.00370 * 20 18 16 24 24 H 1.09000 * 109.47410 * 269.73417 * 1 2 3 25 25 H 1.09004 * 109.46852 * 29.73377 * 1 2 3 26 26 H 1.09001 * 109.46745 * 149.72790 * 1 2 3 27 27 H 1.08001 * 120.00481 * 359.97438 * 3 2 1 28 28 H 1.07996 * 120.00087 * 180.26991 * 4 3 2 29 29 H 1.08008 * 119.99245 * 179.83562 * 5 4 3 30 30 H 1.08002 * 119.99625 * 180.02562 * 6 5 4 31 31 H 1.08992 * 109.47352 * 90.00429 * 14 13 11 32 32 H 1.09003 * 109.46951 * 210.00374 * 14 13 11 33 33 H 1.08997 * 109.47150 * 329.99574 * 14 13 11 34 34 H 1.08998 * 109.47030 * 210.00014 * 15 13 11 35 35 H 1.09000 * 109.46585 * 329.99618 * 15 13 11 36 36 H 0.96998 * 120.00410 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0045 5 6 4.2717 -0.0001 -0.0002 6 6 3.5806 -1.1970 -0.0054 7 6 2.1981 -1.1970 -0.0055 8 6 1.4445 -2.5021 -0.0109 9 9 2.3365 -3.5564 0.2122 10 9 0.4783 -2.4867 1.0008 11 6 0.7709 -2.6878 -1.3461 12 8 1.1628 -2.0708 -2.3139 13 7 -0.2669 -3.5395 -1.4646 14 6 -0.7404 -4.2843 -0.2953 15 6 -0.9213 -3.7204 -2.7627 16 6 -0.2449 -4.8374 -3.5150 17 1 0.5894 -5.3599 -3.0708 18 6 -0.6904 -5.1916 -4.7708 19 7 -0.0998 -6.1659 -5.4275 20 14 -2.1330 -4.2873 -5.5394 21 1 -1.6315 -3.1255 -6.3168 22 1 -2.8689 -5.2072 -6.4435 23 1 -3.0452 -3.8102 -4.4692 24 1 -0.3634 -0.0048 1.0276 25 1 -0.3633 0.8924 -0.5097 26 1 -0.3633 -0.8876 -0.5181 27 1 1.6584 2.1327 -0.0004 28 1 4.1205 2.1325 0.0089 29 1 5.3518 0.0000 0.0006 30 1 4.1206 -2.1323 -0.0087 31 1 -1.5094 -3.7061 0.2168 32 1 -1.1572 -5.2388 -0.6169 33 1 0.0931 -4.4624 0.3840 34 1 -1.9712 -3.9698 -2.6087 35 1 -0.8477 -2.7978 -3.3384 36 1 -0.4135 -6.4153 -6.3109 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319612970.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:32 Heat of formation + Delta-G solvation = -92.221917 kcal Electronic energy + Delta-G solvation = -23101.441700 eV Core-core repulsion = 19415.136175 eV Total energy + Delta-G solvation = -3686.305524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.19646 -47.11537 -39.70367 -38.77625 -35.25717 -33.00152 -32.59381 -31.77665 -28.99550 -27.58739 -26.71998 -25.59683 -23.03796 -22.01379 -21.15592 -19.57807 -17.79528 -17.59588 -17.16623 -16.96533 -15.93617 -15.36011 -15.02098 -14.80161 -14.62878 -14.39444 -13.91862 -13.73353 -13.64903 -13.36050 -13.15064 -12.92715 -12.59512 -12.51833 -12.38995 -12.16628 -12.07813 -11.91228 -11.51620 -11.17139 -11.08842 -10.97217 -10.60293 -10.23707 -9.64084 -9.36102 -9.00893 -8.73199 -8.65143 -7.94872 -6.14243 -4.14741 1.10538 1.31956 2.69521 3.08698 3.25344 3.30977 3.33065 3.57019 3.88727 4.09136 4.33848 4.59289 4.73885 4.83817 4.87093 5.03422 5.18043 5.21672 5.44856 5.53678 5.58878 5.61821 5.70983 5.82507 5.87231 6.11253 6.14263 6.30212 6.38830 6.45156 6.51080 6.76180 6.85700 7.05369 7.50065 7.86315 8.31301 8.51137 8.89021 9.43980 10.98887 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.022904 B = 0.005371 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.224382 B = 5212.104346 C = 5367.781452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.038 4.038 3 C -0.125 4.125 4 C -0.099 4.099 5 C -0.129 4.129 6 C -0.076 4.076 7 C -0.135 4.135 8 C 0.330 3.670 9 F -0.178 7.178 10 F -0.184 7.184 11 C 0.482 3.518 12 O -0.494 6.494 13 N -0.576 5.576 14 C 0.074 3.926 15 C 0.214 3.786 16 C -0.535 4.535 17 H 0.076 0.924 18 C 0.075 3.925 19 N -0.893 5.893 20 Si 0.875 3.125 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.265 1.265 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.128 0.872 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.038 0.962 35 H 0.040 0.960 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.480 12.441 14.460 19.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.038 4.038 3 C -0.143 4.143 4 C -0.117 4.117 5 C -0.147 4.147 6 C -0.094 4.094 7 C -0.137 4.137 8 C 0.290 3.710 9 F -0.159 7.159 10 F -0.164 7.164 11 C 0.263 3.737 12 O -0.369 6.369 13 N -0.307 5.307 14 C -0.070 4.070 15 C 0.095 3.905 16 C -0.573 4.573 17 H 0.095 0.905 18 C -0.128 4.128 19 N -0.531 5.531 20 Si 0.702 3.298 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.190 1.190 24 H 0.098 0.902 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.146 0.854 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.151 0.849 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.636 12.603 13.768 18.851 hybrid contribution -0.619 0.007 -0.374 0.723 sum 2.016 12.611 13.395 18.507 Atomic orbital electron populations 1.20992 0.90739 1.03567 1.02720 1.19599 0.96325 0.91999 0.95874 1.20964 0.94304 0.97067 1.01948 1.21235 0.94261 0.98175 0.98015 1.21067 1.00053 0.91972 1.01625 1.20975 0.92570 0.99388 0.96446 1.19651 0.94642 0.92132 1.07226 1.19873 0.80402 0.84854 0.85864 1.93031 1.68606 1.58991 1.95238 1.93030 1.63771 1.96758 1.62890 1.20234 0.82439 0.82402 0.88673 1.90762 1.62156 1.46733 1.37215 1.47908 1.31060 1.39634 1.12132 1.21975 0.99887 0.97501 0.87591 1.19833 0.92845 0.98380 0.79483 1.21276 1.17832 1.16600 1.01603 0.90542 1.24838 0.96695 0.94751 0.96503 1.69887 1.41090 1.28766 1.13386 0.86863 0.82871 0.80128 0.79931 1.19800 1.20874 1.18982 0.90242 0.90855 0.91403 0.85435 0.85634 0.85400 0.84923 0.92476 0.89965 0.91713 0.94429 0.94225 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.65 8.64 36.01 0.31 -1.33 16 2 C -0.04 -0.55 5.71 -104.62 -0.60 -1.15 16 3 C -0.12 -1.50 9.70 -39.58 -0.38 -1.89 16 4 C -0.10 -1.09 10.05 -39.58 -0.40 -1.49 16 5 C -0.13 -1.54 10.05 -39.59 -0.40 -1.94 16 6 C -0.08 -1.10 9.42 -39.59 -0.37 -1.48 16 7 C -0.14 -2.20 4.38 -104.63 -0.46 -2.66 16 8 C 0.33 5.85 1.26 -29.03 -0.04 5.81 16 9 F -0.18 -3.19 15.25 2.25 0.03 -3.15 16 10 F -0.18 -2.87 12.54 2.25 0.03 -2.84 16 11 C 0.48 10.28 5.04 -10.99 -0.06 10.22 16 12 O -0.49 -12.15 15.71 5.56 0.09 -12.06 16 13 N -0.58 -12.26 2.86 -182.96 -0.52 -12.79 16 14 C 0.07 1.24 9.15 59.85 0.55 1.78 16 15 C 0.21 5.21 4.23 -5.19 -0.02 5.19 16 16 C -0.53 -15.36 9.94 -34.44 -0.34 -15.70 16 17 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 18 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 19 N -0.89 -27.43 13.96 55.43 0.77 -26.65 16 20 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 24 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 26 H 0.07 1.07 5.10 -51.93 -0.26 0.80 16 27 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 28 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 29 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 30 H 0.13 1.82 7.21 -52.49 -0.38 1.45 16 31 H 0.06 0.80 8.01 -51.93 -0.42 0.38 16 32 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 33 H 0.06 1.02 5.83 -51.93 -0.30 0.72 16 34 H 0.04 0.85 7.13 -51.93 -0.37 0.48 16 35 H 0.04 1.01 6.85 -51.93 -0.36 0.65 16 36 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 306.54 15.07 4.62 4.62 Total: -1.00 -33.25 306.54 -6.16 -39.41 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -4.21 Total: -0.54 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -2.30 Total: -2.55 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.25 Total: -39.44 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 9 Polarization: -6.06 SS G_CDS: 0.06 Total: -6.00 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.25 -6.16 -39.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319612970.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.811 kcal (2) G-P(sol) polarization free energy of solvation -33.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds