Wall clock time and date at job start Tue Mar 31 2020 05:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31587 * 1 3 3 Si 1.86795 * 119.99594 * 2 1 4 4 H 1.48501 * 109.47444 * 240.00366 * 3 2 1 5 5 H 1.48501 * 109.47474 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47125 * 120.00352 * 3 2 1 7 7 C 1.38615 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99798 * 179.97438 * 7 2 1 9 9 O 1.34815 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.35796 * 116.99679 * 185.05697 * 9 7 2 11 11 C 1.38897 * 119.99787 * 354.45650 * 10 9 7 12 12 C 1.38011 * 120.00721 * 180.02562 * 11 10 9 13 13 C 1.38942 * 119.99256 * 0.02562 * 12 11 10 14 14 N 1.39786 * 120.00303 * 179.97438 * 13 12 11 15 15 C 1.46500 * 119.99924 * 180.02562 * 14 13 12 16 16 C 1.53781 * 113.62065 * 105.86041 * 15 14 13 17 17 C 1.53952 * 87.02069 * 89.22742 * 16 15 14 18 18 C 1.53002 * 113.66604 * 139.93428 * 17 16 15 19 19 F 1.39904 * 109.46806 * 202.44296 * 18 17 16 20 20 F 1.39900 * 109.47083 * 322.44195 * 18 17 16 21 21 C 1.53782 * 113.61516 * 203.46990 * 15 14 13 22 22 C 1.38942 * 119.99339 * 0.24839 * 13 12 11 23 23 C 1.38020 * 119.99041 * 359.49225 * 22 13 12 24 24 H 0.96997 * 119.99960 * 359.97438 * 1 2 3 25 25 H 1.08000 * 119.99752 * 359.97438 * 11 10 9 26 26 H 1.07999 * 120.00066 * 179.97438 * 12 11 10 27 27 H 0.97002 * 120.00407 * 359.97438 * 14 13 12 28 28 H 1.09004 * 112.85137 * 334.66408 * 15 14 13 29 29 H 1.08992 * 113.61740 * 203.75025 * 16 15 14 30 30 H 1.09009 * 113.61039 * 334.65288 * 16 15 14 31 31 H 1.08997 * 113.61543 * 270.80929 * 17 16 15 32 32 H 1.09000 * 109.46663 * 82.44355 * 18 17 16 33 33 H 1.08995 * 113.61548 * 25.34342 * 21 15 14 34 34 H 1.09001 * 113.61290 * 156.16344 * 21 15 14 35 35 H 1.07998 * 120.01308 * 179.74505 * 22 13 12 36 36 H 1.07997 * 120.00038 * 180.27386 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1034 1.6966 -1.2125 5 1 1.2847 2.7465 0.0006 6 1 3.1035 1.6964 1.2125 7 6 2.0090 -1.2004 -0.0005 8 1 3.0890 -1.2004 -0.0010 9 8 1.3349 -2.3680 -0.0005 10 6 2.0706 -3.5045 0.1056 11 6 3.4579 -3.4375 0.0918 12 6 4.2057 -4.5925 0.1991 13 6 3.5707 -5.8223 0.3204 14 7 4.3279 -6.9923 0.4285 15 6 3.6583 -8.2891 0.5559 16 6 3.7124 -9.1389 -0.7246 17 6 5.0376 -9.7132 -0.1914 18 6 5.1986 -11.2150 -0.4358 19 9 6.1175 -11.7403 0.4791 20 9 3.9626 -11.8493 -0.2717 21 6 4.5290 -9.3696 1.2187 22 6 2.1829 -5.8897 0.3285 23 6 1.4355 -4.7339 0.2265 24 1 -0.4850 0.8400 0.0004 25 1 3.9514 -2.4817 -0.0038 26 1 5.2844 -4.5404 0.1879 27 1 5.2968 -6.9458 0.4185 28 1 2.6594 -8.2094 0.9850 29 1 2.9131 -9.8767 -0.7932 30 1 3.8256 -8.5501 -1.6349 31 1 5.9143 -9.1391 -0.4911 32 1 5.5605 -11.3811 -1.4504 33 1 5.3004 -8.9668 1.8750 34 1 3.9532 -10.1698 1.6836 35 1 1.6890 -6.8459 0.4186 36 1 0.3568 -4.7856 0.2372 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325635003.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:25 Heat of formation + Delta-G solvation = -78.401023 kcal Electronic energy + Delta-G solvation = -21171.920308 eV Core-core repulsion = 17486.214103 eV Total energy + Delta-G solvation = -3685.706205 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.21950 -47.21113 -39.72550 -38.64986 -36.54836 -33.18554 -31.96429 -30.24233 -28.61681 -26.85075 -25.97514 -25.10868 -23.27656 -21.81744 -20.98317 -19.31683 -17.95191 -17.69401 -17.45511 -17.35676 -16.80862 -16.11563 -15.59027 -14.71416 -14.37265 -14.13812 -13.91272 -13.66251 -13.63727 -13.53383 -13.23736 -13.01016 -12.73877 -12.56791 -12.44524 -12.34968 -11.61245 -11.58191 -11.39761 -11.10485 -10.99061 -10.71071 -10.62479 -10.42542 -10.25137 -9.25420 -9.20689 -8.47126 -8.19486 -6.44494 -6.33498 -3.90979 2.18291 2.53245 3.17983 3.19145 3.21767 3.50572 3.67517 3.88009 3.94887 4.05091 4.19226 4.52229 4.55631 4.76569 4.87293 4.95081 5.18797 5.29944 5.44974 5.46593 5.58665 5.62056 5.75095 5.79595 5.81693 5.88213 6.20785 6.25195 6.51673 6.84118 6.89262 7.11514 7.30284 7.42644 7.61578 7.93534 8.10716 8.18472 9.12303 9.86296 10.85169 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.055335 B = 0.002732 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.891212 B =10246.653021 C =10572.938273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.037 3.963 3 Si 0.938 3.062 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.388 4.388 8 H 0.088 0.912 9 O -0.187 6.187 10 C 0.115 3.885 11 C -0.192 4.192 12 C -0.140 4.140 13 C 0.121 3.879 14 N -0.740 5.740 15 C 0.145 3.855 16 C -0.151 4.151 17 C -0.167 4.167 18 C 0.269 3.731 19 F -0.207 7.207 20 F -0.204 7.204 21 C -0.140 4.140 22 C -0.143 4.143 23 C -0.151 4.151 24 H 0.268 0.732 25 H 0.127 0.873 26 H 0.105 0.895 27 H 0.391 0.609 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.115 0.885 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.521 -18.919 -0.735 21.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.166 4.166 3 Si 0.763 3.237 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.105 0.895 9 O -0.092 6.092 10 C 0.063 3.937 11 C -0.211 4.211 12 C -0.162 4.162 13 C 0.024 3.976 14 N -0.374 5.374 15 C 0.037 3.963 16 C -0.191 4.191 17 C -0.186 4.186 18 C 0.215 3.785 19 F -0.188 7.188 20 F -0.185 7.185 21 C -0.178 4.178 22 C -0.165 4.165 23 C -0.171 4.171 24 H 0.078 0.922 25 H 0.145 0.855 26 H 0.123 0.877 27 H 0.224 0.776 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.099 0.901 31 H 0.133 0.867 32 H 0.125 0.875 33 H 0.097 0.903 34 H 0.114 0.886 35 H 0.131 0.869 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.924 -18.813 -0.711 21.282 hybrid contribution 1.029 0.684 0.011 1.235 sum 10.953 -18.129 -0.700 21.193 Atomic orbital electron populations 1.70039 1.05849 1.27426 1.47198 1.25216 0.95799 0.98625 0.97007 0.85835 0.78670 0.80181 0.79017 1.19673 1.20406 1.19671 1.21189 0.91560 0.81117 1.52607 0.89489 1.83988 1.33822 1.11133 1.80271 1.19254 0.90147 0.88250 0.96089 1.20984 0.93730 0.98281 1.08142 1.20221 0.98181 0.90965 1.06801 1.17358 0.90694 0.85627 1.03970 1.43892 1.06583 1.01983 1.84971 1.21442 0.97118 0.83030 0.94711 1.23648 0.95283 0.99818 1.00339 1.23812 1.01452 0.92758 1.00576 1.21760 0.73750 0.90395 0.92561 1.92977 1.66875 1.88360 1.70636 1.92957 1.44824 1.83964 1.96780 1.23317 1.00221 0.99293 0.94981 1.20227 0.91591 0.97360 1.07319 1.20044 0.99350 0.89954 1.07742 0.92216 0.85494 0.87650 0.77555 0.88755 0.88608 0.90081 0.86663 0.87463 0.90318 0.88642 0.86946 0.86475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.93 13.67 55.48 0.76 -25.17 16 2 C 0.04 1.02 5.49 -17.52 -0.10 0.93 16 3 Si 0.94 20.82 29.55 -169.99 -5.02 15.80 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.39 -10.99 9.48 30.87 0.29 -10.69 16 8 H 0.09 2.27 5.20 -52.48 -0.27 2.00 16 9 O -0.19 -5.41 9.76 -0.05 0.00 -5.41 16 10 C 0.12 2.79 6.65 -39.09 -0.26 2.53 16 11 C -0.19 -4.14 9.16 -39.42 -0.36 -4.50 16 12 C -0.14 -2.51 9.89 -39.40 -0.39 -2.90 16 13 C 0.12 2.00 6.66 -83.71 -0.56 1.44 16 14 N -0.74 -9.17 5.45 -51.33 -0.28 -9.45 16 15 C 0.15 1.51 4.08 -67.12 -0.27 1.23 16 16 C -0.15 -1.34 7.33 -25.83 -0.19 -1.53 16 17 C -0.17 -1.27 3.96 -89.71 -0.36 -1.62 16 18 C 0.27 2.02 5.33 37.16 0.20 2.21 16 19 F -0.21 -1.95 17.20 2.25 0.04 -1.92 16 20 F -0.20 -1.91 15.79 2.25 0.04 -1.87 16 21 C -0.14 -1.21 7.17 -25.92 -0.19 -1.40 16 22 C -0.14 -2.52 9.25 -39.40 -0.36 -2.88 16 23 C -0.15 -3.18 9.98 -39.42 -0.39 -3.57 16 24 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.13 2.75 5.63 -52.49 -0.30 2.46 16 26 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 27 H 0.39 4.19 8.72 -40.82 -0.36 3.84 16 28 H 0.09 1.05 6.21 -51.93 -0.32 0.72 16 29 H 0.10 0.82 7.14 -51.93 -0.37 0.44 16 30 H 0.08 0.79 8.14 -51.92 -0.42 0.36 16 31 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.82 7.89 -51.93 -0.41 0.41 16 35 H 0.11 1.67 6.08 -52.49 -0.32 1.36 16 36 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 311.03 15.07 4.69 4.69 Total: -1.00 -31.41 311.03 -6.74 -38.15 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -4.02 Total: 5.93 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: -2.94 Total: -20.75 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.48 Total: -34.62 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: 0.00 Total: -5.41 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.07 Total: -3.79 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.41 -6.74 -38.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325635003.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.254 kcal (2) G-P(sol) polarization free energy of solvation -31.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds