Wall clock time and date at job start Tue Mar 31 2020 05:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86805 * 120.00115 * 2 1 4 4 H 1.48495 * 109.47237 * 87.22178 * 3 2 1 5 5 H 1.48498 * 109.47138 * 207.22264 * 3 2 1 6 6 H 1.48504 * 109.46514 * 327.22090 * 3 2 1 7 7 C 1.40279 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99787 * 10.50571 * 7 2 1 9 9 C 1.40885 * 119.99934 * 190.51200 * 7 2 1 10 10 C 1.40714 * 120.33020 * 36.32229 * 9 7 2 11 11 C 1.37596 * 119.88143 * 179.97438 * 10 9 7 12 12 C 1.38827 * 120.57166 * 0.02562 * 11 10 9 13 13 C 1.38223 * 120.67436 * 0.02562 * 12 11 10 14 14 C 1.39227 * 120.09019 * 359.69359 * 13 12 11 15 15 C 1.47437 * 120.27694 * 180.27968 * 14 13 12 16 16 O 1.21607 * 119.99890 * 175.70774 * 15 14 13 17 17 N 1.34775 * 120.00283 * 355.71167 * 15 14 13 18 18 C 1.46500 * 119.99983 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.46923 * 179.97438 * 18 17 15 20 20 C 1.53004 * 109.47132 * 179.97438 * 19 18 17 21 21 C 1.52994 * 109.47398 * 180.02562 * 20 19 18 22 22 F 1.39897 * 109.47270 * 175.00102 * 21 20 19 23 23 F 1.39898 * 109.47194 * 295.00159 * 21 20 19 24 24 H 0.96995 * 120.00424 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.05633 * 359.95638 * 10 9 7 26 26 H 1.08000 * 119.71122 * 180.02562 * 11 10 9 27 27 H 1.08002 * 119.66173 * 179.97438 * 12 11 10 28 28 H 1.08002 * 119.94745 * 179.97438 * 13 12 11 29 29 H 0.97001 * 119.99734 * 359.97438 * 17 15 14 30 30 H 1.09001 * 109.46722 * 299.99508 * 18 17 15 31 31 H 1.09001 * 109.47263 * 59.99392 * 18 17 15 32 32 H 1.09001 * 109.47351 * 299.99529 * 19 18 17 33 33 H 1.09001 * 109.47316 * 59.99830 * 19 18 17 34 34 H 1.09001 * 109.46791 * 300.00084 * 20 19 18 35 35 H 1.09001 * 109.46985 * 59.99840 * 20 19 18 36 36 H 1.09001 * 109.46881 * 55.00001 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4291 2.0804 1.3984 5 1 3.5660 1.4239 -0.6405 6 1 1.4683 2.6349 -0.7581 7 6 2.0077 -1.2149 0.0005 8 1 1.4812 -2.1423 -0.1696 9 6 3.3988 -1.2250 0.2231 10 6 3.9796 -0.3209 1.1316 11 6 5.3392 -0.3392 1.3423 12 6 6.1466 -1.2431 0.6653 13 6 5.6008 -2.1407 -0.2330 14 6 4.2278 -2.1504 -0.4632 15 6 3.6405 -3.1103 -1.4159 16 8 2.4338 -3.1676 -1.5552 17 7 4.4409 -3.9242 -2.1322 18 6 3.8574 -4.8775 -3.0792 19 6 4.9753 -5.6730 -3.7563 20 6 4.3658 -6.6691 -4.7449 21 6 5.4836 -7.4649 -5.4215 22 9 4.9239 -8.4522 -6.2396 23 9 6.2650 -6.6032 -6.1987 24 1 -0.4850 0.8400 -0.0004 25 1 3.3594 0.3863 1.6623 26 1 5.7821 0.3556 2.0405 27 1 7.2121 -1.2443 0.8416 28 1 6.2399 -2.8385 -0.7537 29 1 5.4035 -3.8783 -2.0213 30 1 3.1964 -5.5609 -2.5460 31 1 3.2877 -4.3366 -3.8349 32 1 5.6360 -4.9894 -4.2896 33 1 5.5453 -6.2139 -3.0009 34 1 3.7054 -7.3526 -4.2113 35 1 3.7956 -6.1285 -5.5004 36 1 6.1074 -7.9341 -4.6607 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334411763.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:59 Heat of formation + Delta-G solvation = -134.703498 kcal Electronic energy + Delta-G solvation = -21314.772424 eV Core-core repulsion = 17626.624760 eV Total energy + Delta-G solvation = -3688.147664 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.17209 -47.18372 -39.11802 -37.19151 -35.65446 -33.77216 -32.90878 -30.48589 -30.24482 -27.92754 -25.39158 -23.65736 -22.23149 -21.77703 -20.90304 -19.48324 -17.85260 -17.65308 -17.36793 -16.63932 -16.51187 -15.52221 -15.35498 -15.03744 -14.16438 -14.12204 -14.08852 -13.83264 -13.58733 -13.54889 -13.07255 -12.70443 -12.52823 -12.41175 -12.13527 -11.96586 -11.79401 -11.52246 -11.08845 -11.00893 -10.94744 -10.71633 -10.46186 -10.18500 -9.82703 -9.27446 -8.51659 -8.45833 -7.84235 -7.61333 -6.92052 -4.50669 2.08131 2.58209 3.07174 3.16182 3.27347 3.45861 3.82052 3.93063 3.99053 4.02686 4.30567 4.37066 4.57857 4.86079 4.99600 5.10632 5.35444 5.38018 5.47125 5.66578 5.75570 5.86189 5.98906 6.02253 6.13507 6.37934 6.48706 6.77368 7.04115 7.07836 7.20966 7.36958 7.56587 7.73396 7.99405 8.27711 8.45826 8.61839 8.84440 9.32747 10.04650 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.024233 B = 0.003585 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.181348 B = 7807.466115 C = 8552.281107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.079 3.921 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.242 1.242 6 H -0.288 1.288 7 C -0.402 4.402 8 H 0.124 0.876 9 C 0.117 3.883 10 C -0.226 4.226 11 C -0.065 4.065 12 C -0.255 4.255 13 C -0.041 4.041 14 C -0.251 4.251 15 C 0.560 3.440 16 O -0.528 6.528 17 N -0.750 5.750 18 C 0.127 3.873 19 C -0.132 4.132 20 C -0.168 4.168 21 C 0.262 3.738 22 F -0.209 7.209 23 F -0.206 7.206 24 H 0.287 0.713 25 H 0.105 0.895 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.392 0.608 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.524 -9.269 -6.145 15.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.166 1.166 6 H -0.216 1.216 7 C -0.429 4.429 8 H 0.141 0.859 9 C 0.112 3.888 10 C -0.245 4.245 11 C -0.084 4.084 12 C -0.274 4.274 13 C -0.060 4.060 14 C -0.255 4.255 15 C 0.354 3.646 16 O -0.405 6.405 17 N -0.405 5.405 18 C 0.003 3.997 19 C -0.170 4.170 20 C -0.207 4.207 21 C 0.208 3.792 22 F -0.190 7.190 23 F -0.188 7.188 24 H 0.098 0.902 25 H 0.122 0.878 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.226 0.774 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.319 -9.228 -6.307 14.553 hybrid contribution 0.811 0.789 -0.055 1.133 sum 10.131 -8.439 -6.362 14.640 Atomic orbital electron populations 1.69565 1.08224 1.30383 1.33401 1.26388 0.94872 1.01667 0.91248 0.86389 0.81340 0.79772 0.79212 1.19398 1.16554 1.21567 1.20206 0.90884 0.96629 1.35141 0.85852 1.17546 0.93133 0.89473 0.88630 1.21162 0.94720 1.04981 1.03607 1.20742 0.93736 0.96674 0.97249 1.20288 0.97880 1.03176 1.06096 1.20769 0.93522 0.96044 0.95655 1.19401 0.92770 1.07055 1.06321 1.18359 0.86247 0.79991 0.80041 1.90730 1.14244 1.68605 1.66947 1.45969 1.09946 1.40374 1.44257 1.21055 0.94877 0.91516 0.92275 1.21731 0.98974 0.98045 0.98200 1.22590 0.97819 0.99800 1.00475 1.21967 0.90371 0.81135 0.85727 1.92984 1.86655 1.63300 1.76101 1.92990 1.76310 1.71412 1.78080 0.90227 0.87766 0.88560 0.88527 0.88708 0.77410 0.91890 0.91866 0.90381 0.90722 0.88292 0.88990 0.87235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.49 13.92 55.56 0.77 -20.71 16 2 C 0.08 2.10 5.47 -17.30 -0.09 2.00 16 3 Si 0.91 20.66 24.51 -169.99 -4.17 16.49 16 4 H -0.27 -5.80 6.76 56.52 0.38 -5.42 16 5 H -0.24 -5.65 6.72 56.52 0.38 -5.27 16 6 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.40 -11.24 8.31 -37.81 -0.31 -11.56 16 8 H 0.12 3.82 5.96 -52.49 -0.31 3.51 16 9 C 0.12 2.99 5.03 -106.54 -0.54 2.45 16 10 C -0.23 -5.30 7.00 -38.88 -0.27 -5.57 16 11 C -0.07 -1.34 10.01 -39.60 -0.40 -1.74 16 12 C -0.26 -4.92 10.03 -39.37 -0.39 -5.32 16 13 C -0.04 -0.80 9.52 -39.22 -0.37 -1.17 16 14 C -0.25 -5.79 5.92 -104.37 -0.62 -6.41 16 15 C 0.56 12.49 7.72 -12.51 -0.10 12.40 16 16 O -0.53 -13.88 13.54 5.27 0.07 -13.80 16 17 N -0.75 -12.28 5.51 -61.38 -0.34 -12.61 16 18 C 0.13 1.72 5.67 -4.04 -0.02 1.69 16 19 C -0.13 -1.18 5.24 -26.73 -0.14 -1.32 16 20 C -0.17 -1.32 5.44 -26.73 -0.15 -1.47 16 21 C 0.26 2.05 5.29 37.15 0.20 2.24 16 22 F -0.21 -2.06 17.34 2.25 0.04 -2.02 16 23 F -0.21 -2.10 17.02 2.25 0.04 -2.06 16 24 H 0.29 6.98 8.29 -40.82 -0.34 6.64 16 25 H 0.10 2.41 5.00 -52.49 -0.26 2.15 16 26 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 27 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 28 H 0.09 1.47 6.42 -52.49 -0.34 1.13 16 29 H 0.39 5.30 6.52 -40.82 -0.27 5.04 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.71 7.94 -51.93 -0.41 0.30 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 308.20 15.07 4.64 4.64 Total: -1.00 -31.17 308.20 -6.30 -37.46 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -4.15 Total: 6.38 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -3.21 Total: -13.76 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.44 Total: -33.33 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.07 Total: -13.80 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.08 Total: -4.08 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.17 Total: 16.49 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.17 -6.30 -37.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334411763.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.241 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds