Wall clock time and date at job start Tue Mar 31 2020 05:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30656 * 1 3 3 Si 1.86803 * 119.99594 * 2 1 4 4 H 1.48503 * 109.47047 * 274.66455 * 3 2 1 5 5 H 1.48504 * 109.47089 * 34.66159 * 3 2 1 6 6 H 1.48498 * 109.46765 * 154.66587 * 3 2 1 7 7 C 1.40223 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00026 * 162.20459 * 7 2 1 9 9 C 1.41114 * 119.99644 * 342.19907 * 7 2 1 10 10 C 1.40893 * 120.09748 * 155.06801 * 9 7 2 11 11 C 1.36315 * 119.88481 * 180.29801 * 10 9 7 12 12 C 1.40014 * 120.10857 * 359.47208 * 11 10 9 13 13 C 1.47642 * 119.89046 * 180.25454 * 12 11 10 14 14 O 1.21592 * 119.99793 * 180.24648 * 13 12 11 15 15 N 1.34771 * 120.00628 * 0.25312 * 13 12 11 16 16 C 1.46505 * 120.00394 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.47046 * 179.97438 * 16 15 13 18 18 C 1.52995 * 109.46847 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.47376 * 180.02562 * 18 17 16 20 20 F 1.39896 * 109.47379 * 175.00013 * 19 18 17 21 21 F 1.39899 * 109.46967 * 295.00125 * 19 18 17 22 22 C 1.40007 * 120.20866 * 0.50874 * 12 11 10 23 23 C 1.36315 * 120.10882 * 359.76744 * 22 12 11 24 24 H 0.96994 * 120.00294 * 359.97438 * 1 2 3 25 25 H 1.07993 * 120.05469 * 0.02562 * 10 9 7 26 26 H 1.08009 * 119.94050 * 179.69890 * 11 10 9 27 27 H 0.97008 * 120.00000 * 359.97438 * 15 13 12 28 28 H 1.09000 * 109.46801 * 299.99590 * 16 15 13 29 29 H 1.08997 * 109.47271 * 59.99250 * 16 15 13 30 30 H 1.09000 * 109.47174 * 299.99591 * 17 16 15 31 31 H 1.09004 * 109.47216 * 59.99895 * 17 16 15 32 32 H 1.09000 * 109.47172 * 299.99926 * 18 17 16 33 33 H 1.09004 * 109.47026 * 60.00112 * 18 17 16 34 34 H 1.09001 * 109.47128 * 54.99516 * 19 18 17 35 35 H 1.07998 * 119.94458 * 179.75437 * 22 12 11 36 36 H 1.08003 * 120.05534 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 2.3893 2.1034 -1.3955 5 1 1.4906 2.6223 0.7963 6 1 3.5838 1.4138 0.5991 7 6 2.0077 -1.2143 -0.0005 8 1 3.0490 -1.2366 -0.2864 9 6 1.3528 -2.4073 0.3725 10 6 1.8232 -3.6488 -0.0991 11 6 1.1836 -4.7981 0.2591 12 6 0.0676 -4.7470 1.1031 13 6 -0.6181 -5.9952 1.4926 14 8 -1.5901 -5.9527 2.2219 15 7 -0.1667 -7.1816 1.0399 16 6 -0.8475 -8.4201 1.4259 17 6 -0.1399 -9.6134 0.7808 18 6 -0.8505 -10.9068 1.1845 19 6 -0.1426 -12.1003 0.5399 20 9 -0.7206 -13.2888 0.9987 21 9 -0.2735 -12.0246 -0.8509 22 6 -0.4032 -3.5157 1.5747 23 6 0.2264 -2.3606 1.2175 24 1 -0.4850 0.8400 0.0004 25 1 2.6863 -3.6895 -0.7469 26 1 1.5405 -5.7499 -0.1059 27 1 0.6086 -7.2155 0.4578 28 1 -0.8227 -8.5254 2.5105 29 1 -1.8832 -8.3860 1.0879 30 1 -0.1651 -9.5079 -0.3038 31 1 0.8959 -9.6477 1.1186 32 1 -0.8250 -11.0121 2.2691 33 1 -1.8864 -10.8728 0.8470 34 1 0.9141 -12.0834 0.8068 35 1 -1.2667 -3.4809 2.2224 36 1 -0.1378 -1.4112 1.5814 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335146173.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:02 Heat of formation + Delta-G solvation = -147.388777 kcal Electronic energy + Delta-G solvation = -20662.591969 eV Core-core repulsion = 16973.894230 eV Total energy + Delta-G solvation = -3688.697739 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.21880 -47.23010 -39.15730 -37.23119 -35.82564 -33.91256 -33.09656 -30.24213 -29.62226 -28.14768 -25.85227 -23.60049 -21.95874 -21.78108 -20.80074 -19.60630 -17.90168 -17.57521 -17.48014 -16.80673 -16.56504 -15.62979 -15.42593 -15.21994 -14.21347 -14.06946 -13.95331 -13.83699 -13.59573 -13.28735 -13.13162 -12.73042 -12.51645 -12.26777 -12.23723 -11.92666 -11.84338 -11.41913 -11.23466 -11.19539 -11.08891 -10.98488 -10.64077 -10.08824 -9.56397 -9.34629 -9.02689 -8.66695 -7.72120 -7.58661 -7.03828 -4.61995 2.21407 2.88956 2.94320 2.99718 3.01536 3.38354 3.72877 3.74281 3.85283 3.95667 4.24263 4.30081 4.55274 4.78801 4.90745 5.03018 5.28398 5.37095 5.55094 5.57040 5.81279 5.90405 5.94857 6.12949 6.27135 6.78655 6.81179 6.89996 7.04196 7.08266 7.41836 7.59297 7.75593 7.85655 8.03291 8.20686 8.41227 8.61118 8.73560 9.03666 9.88193 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.045234 B = 0.002550 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.855294 B =10979.760971 C =11413.650893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.443 4.443 8 H 0.085 0.915 9 C 0.128 3.872 10 C -0.235 4.235 11 C -0.049 4.049 12 C -0.285 4.285 13 C 0.571 3.429 14 O -0.573 6.573 15 N -0.745 5.745 16 C 0.126 3.874 17 C -0.133 4.133 18 C -0.168 4.168 19 C 0.262 3.738 20 F -0.209 7.209 21 F -0.206 7.206 22 C -0.035 4.035 23 C -0.183 4.183 24 H 0.287 0.713 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.397 0.603 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.317 -14.524 0.321 14.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.148 4.148 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.470 4.470 8 H 0.103 0.897 9 C 0.125 3.875 10 C -0.255 4.255 11 C -0.068 4.068 12 C -0.290 4.290 13 C 0.366 3.634 14 O -0.455 6.455 15 N -0.398 5.398 16 C 0.002 3.998 17 C -0.171 4.171 18 C -0.206 4.206 19 C 0.208 3.792 20 F -0.190 7.190 21 F -0.187 7.187 22 C -0.055 4.055 23 C -0.202 4.202 24 H 0.099 0.901 25 H 0.115 0.885 26 H 0.107 0.893 27 H 0.232 0.768 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.128 0.872 35 H 0.118 0.882 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.384 -14.371 0.806 14.460 hybrid contribution 0.604 0.581 -0.488 0.970 sum 1.988 -13.790 0.318 13.937 Atomic orbital electron populations 1.69750 1.07937 1.30155 1.31318 1.26116 0.94809 1.01936 0.91966 0.86212 0.80819 0.79979 0.79363 1.19239 1.19697 1.18093 1.19837 0.98339 0.91225 1.37610 0.89727 1.17789 0.90440 0.92119 0.87156 1.20666 1.04372 0.92838 1.07602 1.20353 0.94305 0.96519 0.95613 1.18899 1.04131 0.91805 1.14116 1.18609 0.82866 0.83366 0.78589 1.90642 1.28437 1.87567 1.38873 1.45892 1.34351 1.05721 1.53859 1.21090 0.96480 0.82886 0.99393 1.21738 1.00122 0.92926 1.02298 1.22583 1.01964 0.93072 1.03012 1.21963 0.99110 0.82460 0.75680 1.92985 1.87298 1.50121 1.88621 1.92994 1.97377 1.96397 1.31963 1.20478 0.97062 0.91541 0.96400 1.21013 1.00055 0.97014 1.02150 0.90137 0.88470 0.89293 0.76817 0.91865 0.91874 0.90232 0.90568 0.88323 0.89018 0.87179 0.88180 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.71 10.97 55.56 0.61 -18.10 16 2 C 0.07 1.72 5.13 -17.31 -0.09 1.63 16 3 Si 0.91 17.22 29.60 -169.99 -5.03 12.19 16 4 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 6 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 7 C -0.44 -10.90 9.04 -37.75 -0.34 -11.24 16 8 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 9 C 0.13 3.24 5.57 -106.80 -0.60 2.64 16 10 C -0.24 -5.36 9.73 -39.27 -0.38 -5.74 16 11 C -0.05 -1.02 9.47 -39.61 -0.38 -1.39 16 12 C -0.29 -6.44 5.89 -104.73 -0.62 -7.05 16 13 C 0.57 11.95 7.76 -12.42 -0.10 11.85 16 14 O -0.57 -13.70 16.32 5.28 0.09 -13.62 16 15 N -0.74 -11.62 5.50 -61.31 -0.34 -11.96 16 16 C 0.13 1.57 5.67 -4.04 -0.02 1.54 16 17 C -0.13 -1.10 5.24 -26.73 -0.14 -1.25 16 18 C -0.17 -1.19 5.44 -26.73 -0.15 -1.34 16 19 C 0.26 1.92 5.29 37.16 0.20 2.11 16 20 F -0.21 -1.95 17.34 2.25 0.04 -1.91 16 21 F -0.21 -2.01 17.02 2.25 0.04 -1.97 16 22 C -0.04 -0.86 9.52 -39.61 -0.38 -1.24 16 23 C -0.18 -4.65 8.63 -39.27 -0.34 -4.99 16 24 H 0.29 6.29 8.29 -40.82 -0.34 5.95 16 25 H 0.10 2.03 8.06 -52.49 -0.42 1.60 16 26 H 0.09 1.49 6.37 -52.48 -0.33 1.15 16 27 H 0.40 5.31 6.47 -40.82 -0.26 5.04 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.68 7.94 -51.93 -0.41 0.27 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.10 2.41 7.63 -52.49 -0.40 2.01 16 36 H 0.12 3.12 6.17 -52.48 -0.32 2.80 16 LS Contribution 318.18 15.07 4.79 4.79 Total: -1.00 -29.49 318.18 -7.37 -36.85 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -4.24 Total: 8.19 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -3.32 Total: -14.47 kcal Atomic # 7 Polarization: -30.33 SS G_CDS: 0.27 Total: -30.06 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.09 Total: -13.62 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.08 Total: -3.89 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -5.03 Total: 12.19 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.49 -7.37 -36.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335146173.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.535 kcal (2) G-P(sol) polarization free energy of solvation -29.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds