Wall clock time and date at job start Tue Mar 31 2020 06:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46882 * 2 1 4 4 H 1.09001 * 109.47364 * 305.00035 * 3 2 1 5 5 F 1.39896 * 109.47181 * 65.00641 * 3 2 1 6 6 C 1.50702 * 109.46685 * 185.00720 * 3 2 1 7 7 O 1.21287 * 120.00006 * 296.72950 * 6 3 2 8 8 N 1.34778 * 120.00354 * 116.73783 * 6 3 2 9 9 C 1.37115 * 120.00046 * 184.62076 * 8 6 3 10 10 H 1.08005 * 120.00120 * 3.26631 * 9 8 6 11 11 C 1.38886 * 120.00142 * 183.26813 * 9 8 6 12 12 N 1.31424 * 119.99729 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00181 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47247 * 90.00025 * 13 11 9 15 15 H 1.48501 * 109.46969 * 209.99864 * 13 11 9 16 16 H 1.48494 * 109.47235 * 329.99877 * 13 11 9 17 17 C 1.39843 * 119.99744 * 4.61908 * 8 6 3 18 18 C 1.38973 * 120.05277 * 89.72934 * 17 8 6 19 19 C 1.38040 * 119.94654 * 179.71902 * 18 17 8 20 20 C 1.38547 * 120.05165 * 0.55434 * 19 18 17 21 21 F 1.35101 * 119.94774 * 179.74130 * 20 19 18 22 22 C 1.38491 * 120.10495 * 359.72138 * 20 19 18 23 23 C 1.38091 * 120.04966 * 359.97438 * 22 20 19 24 24 C 1.50704 * 120.02466 * 179.97438 * 23 22 20 25 25 H 1.09009 * 109.46524 * 299.99722 * 1 2 3 26 26 H 1.08991 * 109.46928 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47577 * 59.99346 * 1 2 3 28 28 H 1.08991 * 109.47633 * 120.00144 * 2 1 3 29 29 H 1.09004 * 109.46613 * 240.00727 * 2 1 3 30 30 H 0.97002 * 120.00287 * 180.02562 * 12 11 9 31 31 H 1.08005 * 120.02490 * 359.97438 * 18 17 8 32 32 H 1.08002 * 119.97541 * 180.27090 * 19 18 17 33 33 H 1.07994 * 119.97495 * 180.02562 * 22 20 19 34 34 H 1.09002 * 109.47121 * 270.02609 * 24 23 22 35 35 H 1.08998 * 109.46870 * 30.02288 * 24 23 22 36 36 H 1.08994 * 109.47423 * 150.02082 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 9 1.6700 2.0680 1.1954 6 6 3.5419 1.4443 -0.1240 7 8 4.2229 0.9455 0.7469 8 7 4.1284 2.0003 -1.2026 9 6 5.4878 1.9187 -1.3621 10 1 6.0826 1.3638 -0.6516 11 6 6.1000 2.5494 -2.4375 12 7 5.3762 3.2241 -3.3024 13 14 7.9518 2.4376 -2.6552 14 1 8.2820 1.2500 -3.4835 15 1 8.4459 3.6646 -3.3301 16 1 8.5998 2.3091 -1.3253 17 6 3.3505 2.6605 -2.1590 18 6 3.0916 4.0196 -2.0279 19 6 2.3283 4.6702 -2.9763 20 6 1.8109 3.9671 -4.0521 21 9 1.0598 4.6049 -4.9764 22 6 2.0629 2.6115 -4.1819 23 6 2.8311 1.9576 -3.2390 24 6 3.1045 0.4823 -3.3804 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 5.8036 3.6644 -4.0537 31 1 3.4906 4.5671 -1.1868 32 1 2.1304 5.7273 -2.8772 33 1 1.6589 2.0655 -5.0215 34 1 2.3240 -0.0824 -2.8704 35 1 3.1153 0.2145 -4.4369 36 1 4.0718 0.2478 -2.9363 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340783602.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:20 Heat of formation + Delta-G solvation = -100.893600 kcal Electronic energy + Delta-G solvation = -23475.390586 eV Core-core repulsion = 19788.709030 eV Total energy + Delta-G solvation = -3686.681557 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.23812 -47.24104 -39.73205 -37.49313 -34.71612 -33.63205 -32.05035 -31.82217 -28.74432 -27.58799 -26.38947 -24.70076 -22.30201 -21.66627 -21.00920 -19.31518 -17.99924 -17.09926 -16.48550 -16.00580 -15.76144 -15.12090 -14.93491 -14.90644 -14.17920 -14.09698 -13.56395 -13.45145 -13.31286 -12.87713 -12.72698 -12.60685 -12.39218 -12.21390 -11.84478 -11.74093 -11.39349 -11.23943 -11.21759 -10.95996 -10.78842 -10.51545 -10.47532 -10.45983 -10.31224 -9.52536 -8.70227 -8.26253 -8.05885 -7.79269 -6.22220 -4.08952 1.97091 2.04646 3.02626 3.16383 3.20419 3.45634 3.87482 4.30809 4.39352 4.92488 4.97463 4.97918 5.11758 5.20558 5.29010 5.45818 5.50612 5.62970 5.72093 5.82132 5.93434 6.02344 6.05680 6.18976 6.23915 6.37958 6.44014 6.47956 6.61196 6.82334 6.89319 7.01049 7.35895 7.38621 7.58409 7.80407 8.21806 8.90350 9.13087 9.58415 10.51462 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.012163 B = 0.009828 C = 0.006488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.538489 B = 2848.188643 C = 4314.532677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.139 4.139 3 C 0.084 3.916 4 H 0.089 0.911 5 F -0.200 7.200 6 C 0.430 3.570 7 O -0.562 6.562 8 N -0.405 5.405 9 C -0.315 4.315 10 H 0.112 0.888 11 C 0.034 3.966 12 N -0.861 5.861 13 Si 0.932 3.068 14 H -0.276 1.276 15 H -0.282 1.282 16 H -0.269 1.269 17 C 0.227 3.773 18 C -0.069 4.069 19 C -0.147 4.147 20 C 0.069 3.931 21 F -0.157 7.157 22 C -0.145 4.145 23 C -0.054 4.054 24 C -0.110 4.110 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.273 0.727 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.772 -1.735 -2.054 8.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.177 4.177 3 C 0.045 3.955 4 H 0.107 0.893 5 F -0.181 7.181 6 C 0.217 3.783 7 O -0.444 6.444 8 N -0.121 5.121 9 C -0.441 4.441 10 H 0.129 0.871 11 C -0.171 4.171 12 N -0.498 5.498 13 Si 0.758 3.242 14 H -0.202 1.202 15 H -0.207 1.207 16 H -0.193 1.193 17 C 0.135 3.865 18 C -0.089 4.089 19 C -0.167 4.167 20 C 0.050 3.950 21 F -0.136 7.136 22 C -0.165 4.165 23 C -0.056 4.056 24 C -0.166 4.166 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.362 -1.832 -1.800 7.797 hybrid contribution 0.946 0.475 -0.619 1.226 sum -6.416 -1.358 -2.419 6.990 Atomic orbital electron populations 1.21769 0.94838 1.01927 1.02317 1.21970 0.96602 0.94703 1.04440 1.21552 0.94483 0.94938 0.84562 0.89316 1.92794 1.92271 1.84076 1.48944 1.20167 0.89001 0.85207 0.83892 1.90560 1.64554 1.49327 1.39969 1.41369 1.06775 1.46534 1.17427 1.19859 0.80208 1.32870 1.11155 0.87052 1.25313 1.00687 0.95629 0.95484 1.69806 1.34923 1.31627 1.13487 0.85815 0.81759 0.77818 0.78787 1.20223 1.20736 1.19325 1.17019 0.89775 0.90580 0.89123 1.20812 0.96196 0.93426 0.98420 1.20630 1.01623 0.99513 0.94907 1.17455 0.97291 0.91003 0.89253 1.91398 1.74633 1.82362 1.65161 1.20529 1.02683 0.92640 1.00643 1.19561 0.96492 0.96186 0.93335 1.20718 1.02858 0.91541 1.01529 0.92205 0.92214 0.92442 0.90016 0.90017 0.91495 0.86405 0.86172 0.86178 0.92415 0.92341 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.83 37.16 0.37 -1.53 16 2 C -0.14 -2.19 5.64 -26.73 -0.15 -2.34 16 3 C 0.08 1.61 3.48 -27.88 -0.10 1.51 16 4 H 0.09 1.61 6.18 -51.93 -0.32 1.29 16 5 F -0.20 -4.02 16.75 2.25 0.04 -3.98 16 6 C 0.43 10.04 6.72 -10.98 -0.07 9.97 16 7 O -0.56 -15.01 16.62 5.55 0.09 -14.92 16 8 N -0.40 -9.58 1.78 -58.97 -0.11 -9.69 16 9 C -0.32 -8.05 8.91 -14.95 -0.13 -8.19 16 10 H 0.11 3.01 7.18 -52.48 -0.38 2.63 16 11 C 0.03 0.81 5.44 -17.49 -0.10 0.72 16 12 N -0.86 -20.86 9.35 55.49 0.52 -20.34 16 13 Si 0.93 19.69 29.55 -169.99 -5.02 14.67 16 14 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 15 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 17 C 0.23 4.87 0.97 -83.67 -0.08 4.79 16 18 C -0.07 -1.42 8.83 -39.38 -0.35 -1.76 16 19 C -0.15 -2.72 10.02 -39.54 -0.40 -3.12 16 20 C 0.07 1.27 7.30 -39.37 -0.29 0.99 16 21 F -0.16 -2.77 17.27 2.25 0.04 -2.74 16 22 C -0.15 -2.62 9.67 -39.54 -0.38 -3.01 16 23 C -0.05 -1.05 5.00 -104.42 -0.52 -1.57 16 24 C -0.11 -1.94 9.77 36.01 0.35 -1.59 16 25 H 0.06 0.75 7.94 -51.92 -0.41 0.34 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.08 1.23 6.91 -51.93 -0.36 0.87 16 30 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 31 H 0.12 2.45 8.06 -52.48 -0.42 2.03 16 32 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 33 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 34 H 0.06 0.88 6.91 -51.93 -0.36 0.52 16 35 H 0.06 0.92 8.09 -51.93 -0.42 0.50 16 36 H 0.08 1.69 6.92 -51.93 -0.36 1.33 16 LS Contribution 311.22 15.07 4.69 4.69 Total: -1.00 -27.84 311.22 -5.88 -33.72 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -4.28 Total: 3.72 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -1.85 Total: -5.13 kcal Atomic # 7 Polarization: -30.44 SS G_CDS: 0.41 Total: -30.03 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.09 Total: -14.92 kcal Atomic # 9 Polarization: -6.79 SS G_CDS: 0.08 Total: -6.72 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.84 -5.88 -33.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340783602.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.175 kcal (2) G-P(sol) polarization free energy of solvation -27.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds