Wall clock time and date at job start Tue Mar 31 2020 06:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47116 * 2 1 4 4 H 1.09005 * 109.47182 * 54.99578 * 3 2 1 5 5 F 1.39899 * 109.47204 * 294.99651 * 3 2 1 6 6 C 1.50701 * 109.47183 * 174.99719 * 3 2 1 7 7 O 1.21278 * 120.00239 * 95.45230 * 6 3 2 8 8 N 1.34784 * 119.99811 * 275.44579 * 6 3 2 9 9 C 1.37118 * 119.99926 * 4.98358 * 8 6 3 10 10 H 1.08002 * 120.00383 * 6.92071 * 9 8 6 11 11 C 1.38881 * 119.99745 * 186.92071 * 9 8 6 12 12 N 1.31432 * 120.00294 * 351.16385 * 11 9 8 13 13 Si 1.86805 * 119.99914 * 171.15652 * 11 9 8 14 14 H 1.48495 * 109.47255 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47022 * 120.00333 * 13 11 9 16 16 H 1.48502 * 109.47161 * 240.00019 * 13 11 9 17 17 C 1.39839 * 119.99906 * 184.97657 * 8 6 3 18 18 C 1.38971 * 120.05270 * 90.00027 * 17 8 6 19 19 C 1.38039 * 119.95342 * 179.97438 * 18 17 8 20 20 C 1.38547 * 120.04925 * 0.02562 * 19 18 17 21 21 F 1.35096 * 119.94925 * 180.02562 * 20 19 18 22 22 C 1.38498 * 120.10341 * 359.97438 * 20 19 18 23 23 C 1.38093 * 120.05166 * 359.74331 * 22 20 19 24 24 C 1.50699 * 120.02296 * 180.27277 * 23 22 20 25 25 H 1.08999 * 109.47348 * 60.00658 * 1 2 3 26 26 H 1.08998 * 109.47820 * 300.00330 * 1 2 3 27 27 H 1.09002 * 109.46842 * 180.02562 * 1 2 3 28 28 H 1.09011 * 109.47035 * 119.99533 * 2 1 3 29 29 H 1.08998 * 109.47820 * 239.99670 * 2 1 3 30 30 H 0.96994 * 119.99800 * 185.01078 * 12 11 9 31 31 H 1.08003 * 120.02565 * 0.02562 * 18 17 8 32 32 H 1.07993 * 119.98032 * 179.97438 * 19 18 17 33 33 H 1.08001 * 119.97444 * 180.02562 * 22 20 19 34 34 H 1.08994 * 109.47329 * 270.23164 * 24 23 22 35 35 H 1.08992 * 109.47441 * 30.24237 * 24 23 22 36 36 H 1.09001 * 109.46789 * 150.23782 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 0.8418 5 9 1.6699 2.0679 -1.1954 6 6 3.5418 1.4443 0.1239 7 8 4.2323 1.5144 -0.8707 8 7 4.1178 1.3682 1.3401 9 6 3.3419 1.1863 2.4559 10 1 2.2844 0.9924 2.3527 11 6 3.9158 1.2514 3.7189 12 7 5.2227 1.3131 3.8445 13 14 2.8304 1.2514 5.2392 14 1 1.4050 1.1750 4.8298 15 1 3.1651 0.0785 6.0865 16 1 3.0582 2.5000 6.0101 17 6 5.5066 1.4745 1.4640 18 6 6.0955 2.7197 1.6487 19 6 7.4666 2.8222 1.7712 20 6 8.2557 1.6850 1.7096 21 9 9.5973 1.7877 1.8303 22 6 7.6711 0.4430 1.5256 23 6 6.2994 0.3349 1.4084 24 6 5.6635 -1.0175 1.2143 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3635 0.5138 0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 5.6270 1.2852 4.7257 31 1 5.4809 3.6064 1.6971 32 1 7.9248 3.7896 1.9143 33 1 8.2881 -0.4421 1.4783 34 1 5.5924 -1.2361 0.1489 35 1 6.2726 -1.7787 1.7016 36 1 4.6653 -1.0158 1.6522 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340783604.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:24 Heat of formation + Delta-G solvation = -102.476800 kcal Electronic energy + Delta-G solvation = -23218.260334 eV Core-core repulsion = 19531.510125 eV Total energy + Delta-G solvation = -3686.750209 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.09131 -47.12633 -39.63902 -37.29243 -34.87115 -33.59376 -31.92854 -31.66832 -29.11281 -27.06293 -26.12192 -24.92793 -22.32893 -21.37696 -20.76212 -19.45663 -18.10304 -17.07594 -16.34811 -15.80228 -15.46244 -15.04994 -14.83805 -14.77856 -14.67272 -13.74070 -13.52504 -13.37723 -13.22640 -12.65048 -12.59171 -12.51970 -12.36163 -12.04000 -11.83444 -11.68510 -11.42411 -11.33884 -11.14697 -10.87768 -10.74965 -10.58298 -10.51196 -10.33987 -10.20870 -9.59253 -8.63779 -8.27831 -7.90143 -7.67998 -6.26748 -4.21820 2.20846 2.26299 2.94733 3.07260 3.10610 3.45018 3.81785 4.24722 4.59604 4.84109 5.07747 5.13786 5.28278 5.30990 5.57553 5.61220 5.65940 5.81504 5.83411 5.97630 5.99587 6.18192 6.21887 6.37392 6.38673 6.43665 6.50479 6.58083 6.71136 6.97165 7.04508 7.10010 7.20788 7.38277 7.59003 7.79886 8.21089 8.78433 9.10969 9.53395 10.42099 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.014938 B = 0.007920 C = 0.006035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.025102 B = 3534.467386 C = 4638.848841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.143 4.143 3 C 0.093 3.907 4 H 0.104 0.896 5 F -0.202 7.202 6 C 0.440 3.560 7 O -0.578 6.578 8 N -0.408 5.408 9 C -0.354 4.354 10 H 0.110 0.890 11 C 0.043 3.957 12 N -0.845 5.845 13 Si 0.925 3.075 14 H -0.267 1.267 15 H -0.279 1.279 16 H -0.278 1.278 17 C 0.250 3.750 18 C -0.068 4.068 19 C -0.151 4.151 20 C 0.066 3.934 21 F -0.159 7.159 22 C -0.149 4.149 23 C -0.042 4.042 24 C -0.103 4.103 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.275 0.725 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.336 -2.220 -0.175 4.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C 0.054 3.946 4 H 0.122 0.878 5 F -0.183 7.183 6 C 0.228 3.772 7 O -0.462 6.462 8 N -0.124 5.124 9 C -0.480 4.480 10 H 0.128 0.872 11 C -0.164 4.164 12 N -0.481 5.481 13 Si 0.751 3.249 14 H -0.191 1.191 15 H -0.205 1.205 16 H -0.204 1.204 17 C 0.159 3.841 18 C -0.088 4.088 19 C -0.171 4.171 20 C 0.047 3.953 21 F -0.138 7.138 22 C -0.169 4.169 23 C -0.043 4.043 24 C -0.159 4.159 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.111 0.889 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.131 0.869 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.819 -2.096 -0.492 3.548 hybrid contribution -0.178 0.091 1.192 1.209 sum -2.997 -2.006 0.701 3.674 Atomic orbital electron populations 1.21751 0.95023 1.01791 1.02138 1.22003 0.96640 0.94961 1.04505 1.21316 0.93959 0.94953 0.84388 0.87841 1.92780 1.92044 1.84152 1.49336 1.20369 0.89885 0.83700 0.83269 1.90627 1.64033 1.55060 1.36453 1.41328 1.03289 1.61964 1.05863 1.19814 0.93365 1.51814 0.82967 0.87247 1.25301 0.96138 0.95674 0.99320 1.69880 1.08579 1.44949 1.24683 0.85886 0.79796 0.78209 0.81030 1.19149 1.20508 1.20395 1.16792 0.82732 0.91787 0.92790 1.20649 0.93199 0.96969 0.97956 1.20553 0.93779 0.96711 1.06033 1.17416 0.76104 0.94816 1.06949 1.91378 1.31025 1.97132 1.94250 1.20493 0.94685 0.95493 1.06196 1.19454 0.91847 0.95143 0.97883 1.20605 1.01763 0.92964 1.00602 0.92456 0.92389 0.92406 0.88884 0.90882 0.91291 0.86874 0.86466 0.86459 0.92450 0.92804 0.90364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.83 37.15 0.37 -1.55 16 2 C -0.14 -2.27 5.42 -26.73 -0.14 -2.42 16 3 C 0.09 1.77 2.89 -27.88 -0.08 1.69 16 4 H 0.10 1.83 6.83 -51.93 -0.35 1.48 16 5 F -0.20 -4.08 16.48 2.25 0.04 -4.05 16 6 C 0.44 10.09 6.85 -10.98 -0.08 10.01 16 7 O -0.58 -15.18 16.75 5.56 0.09 -15.09 16 8 N -0.41 -9.37 1.79 -58.97 -0.11 -9.47 16 9 C -0.35 -7.81 8.08 -14.95 -0.12 -7.93 16 10 H 0.11 2.20 5.40 -52.49 -0.28 1.92 16 11 C 0.04 0.97 5.43 -17.48 -0.10 0.87 16 12 N -0.85 -19.94 9.40 55.49 0.52 -19.42 16 13 Si 0.92 17.68 29.56 -169.99 -5.03 12.65 16 14 H -0.27 -4.91 7.11 56.52 0.40 -4.50 16 15 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 16 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16 17 C 0.25 5.87 2.22 -83.68 -0.19 5.68 16 18 C -0.07 -1.54 8.90 -39.38 -0.35 -1.89 16 19 C -0.15 -3.14 10.02 -39.54 -0.40 -3.54 16 20 C 0.07 1.38 7.30 -39.37 -0.29 1.09 16 21 F -0.16 -3.14 17.26 2.25 0.04 -3.10 16 22 C -0.15 -3.10 9.67 -39.54 -0.38 -3.48 16 23 C -0.04 -0.92 5.19 -104.42 -0.54 -1.46 16 24 C -0.10 -2.03 9.77 36.00 0.35 -1.68 16 25 H 0.06 0.73 7.94 -51.93 -0.41 0.32 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.09 1.48 7.11 -51.92 -0.37 1.11 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.27 6.35 8.32 -40.82 -0.34 6.01 16 31 H 0.11 2.50 8.06 -52.48 -0.42 2.08 16 32 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 33 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 36 H 0.08 1.63 6.91 -51.93 -0.36 1.27 16 LS Contribution 311.45 15.07 4.69 4.69 Total: -1.00 -27.00 311.45 -5.98 -32.98 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -4.29 Total: 5.40 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -1.94 Total: -4.61 kcal Atomic # 7 Polarization: -29.31 SS G_CDS: 0.42 Total: -28.89 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: 0.09 Total: -15.09 kcal Atomic # 9 Polarization: -7.22 SS G_CDS: 0.08 Total: -7.14 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.00 -5.98 -32.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340783604.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.498 kcal (2) G-P(sol) polarization free energy of solvation -26.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds