Wall clock time and date at job start Tue Mar 31 2020 06:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46885 * 2 1 4 4 H 1.09004 * 109.46922 * 318.66063 * 3 2 1 5 5 F 1.39899 * 109.47533 * 78.66409 * 3 2 1 6 6 C 1.50697 * 109.47055 * 198.66479 * 3 2 1 7 7 O 1.21289 * 120.00347 * 100.84304 * 6 3 2 8 8 N 1.34779 * 119.99994 * 280.84519 * 6 3 2 9 9 C 1.46496 * 119.99864 * 357.35335 * 8 6 3 10 10 C 1.50697 * 109.47443 * 278.94914 * 9 8 6 11 11 H 1.08005 * 119.99534 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00246 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00083 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00177 * 180.02562 * 12 10 9 15 15 H 1.48510 * 109.46825 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47311 * 120.00056 * 14 12 10 17 17 H 1.48502 * 109.47364 * 240.00464 * 14 12 10 18 18 C 1.40027 * 120.00066 * 177.62666 * 8 6 3 19 19 C 1.38853 * 120.04380 * 126.37962 * 18 8 6 20 20 C 1.38116 * 119.95662 * 179.72581 * 19 18 8 21 21 C 1.38478 * 120.03941 * 0.54690 * 20 19 18 22 22 F 1.35106 * 119.95026 * 179.70382 * 21 20 19 23 23 C 1.38472 * 120.09450 * 359.73043 * 21 20 19 24 24 C 1.38114 * 120.04237 * 359.97438 * 23 21 20 25 25 H 1.08992 * 109.47623 * 300.00026 * 1 2 3 26 26 H 1.09001 * 109.47114 * 60.00529 * 1 2 3 27 27 H 1.09004 * 109.46684 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47623 * 239.99974 * 2 1 3 29 29 H 1.09001 * 109.47114 * 119.99470 * 2 1 3 30 30 H 1.09001 * 109.47373 * 38.95518 * 9 8 6 31 31 H 1.08998 * 109.47120 * 158.95032 * 9 8 6 32 32 H 0.97005 * 119.99842 * 179.97438 * 13 12 10 33 33 H 1.08003 * 120.02049 * 359.97438 * 19 18 8 34 34 H 1.07994 * 119.97911 * 180.25392 * 20 19 18 35 35 H 1.07997 * 119.97834 * 179.97438 * 23 21 20 36 36 H 1.07999 * 120.02097 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.4335 2.0423 -0.6788 5 9 1.9510 1.9687 1.2932 6 6 3.4765 1.4675 -0.4547 7 8 3.7466 1.7840 -1.5940 8 7 4.4611 1.1380 0.4046 9 6 4.1401 0.8119 1.7963 10 6 3.9619 2.0852 2.5824 11 1 4.0759 3.0418 2.0940 12 6 3.6522 2.0291 3.9247 13 7 3.5129 0.8643 4.5192 14 14 3.4306 3.6074 4.8990 15 1 3.6386 4.7746 4.0045 16 1 2.0568 3.6536 5.4609 17 1 4.4199 3.6490 6.0058 18 6 5.7916 1.1130 -0.0313 19 6 6.7602 1.8378 0.6502 20 6 8.0729 1.8073 0.2220 21 6 8.4213 1.0636 -0.8930 22 9 9.7050 1.0399 -1.3138 23 6 7.4559 0.3447 -1.5775 24 6 6.1431 0.3677 -1.1489 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.2178 0.2319 1.8301 31 1 4.9524 0.2283 2.2294 32 1 3.2953 0.8249 5.4638 33 1 6.4879 2.4218 1.5170 34 1 8.8273 2.3676 0.7542 35 1 7.7296 -0.2343 -2.4470 36 1 5.3904 -0.1928 -1.6832 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346809660.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:11 Heat of formation + Delta-G solvation = -99.558745 kcal Electronic energy + Delta-G solvation = -22792.890523 eV Core-core repulsion = 19106.266850 eV Total energy + Delta-G solvation = -3686.623673 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.63220 -46.97677 -39.94481 -37.89968 -35.11715 -33.73847 -32.61844 -30.86126 -29.46107 -27.55577 -26.60360 -23.33572 -22.64622 -22.56431 -21.46598 -19.36308 -17.44077 -17.01001 -16.70455 -16.42048 -15.80344 -15.46595 -15.31871 -14.94547 -14.61819 -14.16829 -13.89940 -13.62792 -13.27243 -13.22704 -12.85297 -12.47853 -12.38510 -12.34614 -12.03587 -11.87345 -11.71695 -11.47452 -10.94826 -10.92383 -10.83424 -10.74079 -10.22998 -10.12386 -9.82440 -9.20342 -8.81245 -8.78106 -8.54060 -7.60697 -6.16435 -4.16916 1.39105 1.54641 2.91299 3.24012 3.32869 3.36411 3.50574 3.93856 4.35545 4.54306 4.71490 4.90783 5.05442 5.10654 5.17098 5.20611 5.30475 5.58351 5.60433 5.66981 5.73271 5.85561 5.93957 6.07553 6.19157 6.34329 6.37815 6.38981 6.52259 6.62363 6.76934 7.07275 7.13087 7.43490 7.76136 7.95842 8.00242 8.55145 8.81802 9.44329 10.92080 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.013869 B = 0.007058 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.393138 B = 3966.295817 C = 5490.445821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.149 4.149 3 C 0.083 3.917 4 H 0.101 0.899 5 F -0.156 7.156 6 C 0.500 3.500 7 O -0.550 6.550 8 N -0.545 5.545 9 C 0.232 3.768 10 C -0.513 4.513 11 H 0.062 0.938 12 C 0.067 3.933 13 N -0.893 5.893 14 Si 0.894 3.106 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.284 1.284 18 C 0.154 3.846 19 C -0.089 4.089 20 C -0.143 4.143 21 C 0.075 3.925 22 F -0.148 7.148 23 C -0.145 4.145 24 C -0.091 4.091 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.040 0.960 32 H 0.263 0.737 33 H 0.150 0.850 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.688 -2.441 -7.775 8.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.187 4.187 3 C 0.043 3.957 4 H 0.119 0.881 5 F -0.136 7.136 6 C 0.288 3.712 7 O -0.428 6.428 8 N -0.270 5.270 9 C 0.114 3.886 10 C -0.552 4.552 11 H 0.080 0.920 12 C -0.136 4.136 13 N -0.532 5.532 14 Si 0.722 3.278 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.211 1.211 18 C 0.062 3.938 19 C -0.109 4.109 20 C -0.162 4.162 21 C 0.055 3.945 22 F -0.126 7.126 23 C -0.164 4.164 24 C -0.111 4.111 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.110 0.890 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.167 0.833 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.773 -2.354 -8.132 8.501 hybrid contribution 0.053 0.845 0.765 1.141 sum 0.826 -1.509 -7.366 7.565 Atomic orbital electron populations 1.21741 0.94446 1.02076 1.02273 1.22160 0.97464 0.94755 1.04361 1.21688 0.93126 0.96967 0.83882 0.88090 1.93209 1.96670 1.87403 1.36360 1.21202 0.88313 0.76513 0.85158 1.90672 1.84209 1.48401 1.19547 1.46127 1.02740 1.64155 1.13978 1.19888 0.97995 0.97517 0.73165 1.21311 1.47780 0.92214 0.93876 0.92027 1.24800 0.95102 0.96256 0.97408 1.69911 1.48218 1.23613 1.11437 0.86490 0.77844 0.83542 0.79911 1.19709 1.20868 1.21058 1.17801 0.85245 0.95820 0.94959 1.21314 0.91299 0.97315 1.00964 1.20984 0.97302 1.01248 0.96691 1.17656 0.78588 1.01631 0.96580 1.91452 1.35906 1.95476 1.89800 1.20852 0.92422 1.01839 1.01320 1.20933 0.95348 0.98126 0.96714 0.91777 0.92710 0.92215 0.90693 0.89018 0.93136 0.94193 0.92690 0.83260 0.84756 0.85002 0.85340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.83 37.16 0.37 -1.47 16 2 C -0.15 -2.23 5.54 -26.73 -0.15 -2.37 16 3 C 0.08 1.47 3.38 -27.88 -0.09 1.37 16 4 H 0.10 1.58 8.00 -51.93 -0.42 1.17 16 5 F -0.16 -3.32 12.37 2.25 0.03 -3.29 16 6 C 0.50 10.06 6.52 -10.99 -0.07 9.98 16 7 O -0.55 -11.84 16.11 5.55 0.09 -11.76 16 8 N -0.54 -11.22 2.61 -114.72 -0.30 -11.52 16 9 C 0.23 5.29 4.44 -5.20 -0.02 5.27 16 10 C -0.51 -12.82 5.94 -34.44 -0.20 -13.02 16 11 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 12 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -24.01 13.29 55.43 0.74 -23.27 16 14 Si 0.89 20.49 29.54 -169.99 -5.02 15.46 16 15 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 C 0.15 2.97 5.21 -83.66 -0.44 2.54 16 19 C -0.09 -1.62 9.57 -39.40 -0.38 -2.00 16 20 C -0.14 -2.26 10.02 -39.54 -0.40 -2.66 16 21 C 0.07 1.17 7.30 -39.41 -0.29 0.88 16 22 F -0.15 -2.24 17.27 2.25 0.04 -2.20 16 23 C -0.14 -2.20 10.02 -39.54 -0.40 -2.60 16 24 C -0.09 -1.56 8.80 -39.40 -0.35 -1.90 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.60 8.13 -51.93 -0.42 0.18 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.02 7.99 -51.93 -0.42 0.61 16 29 H 0.09 1.51 6.26 -51.93 -0.32 1.18 16 30 H 0.05 1.17 4.75 -51.93 -0.25 0.93 16 31 H 0.04 0.97 7.98 -51.93 -0.41 0.55 16 32 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 33 H 0.15 2.86 7.43 -52.48 -0.39 2.47 16 34 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.13 2.10 7.78 -52.49 -0.41 1.69 16 LS Contribution 311.39 15.07 4.69 4.69 Total: -1.00 -28.07 311.39 -6.52 -34.60 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -4.27 Total: 1.63 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -2.51 Total: -4.34 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.44 Total: -34.80 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 9 Polarization: -5.56 SS G_CDS: 0.07 Total: -5.49 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.07 -6.52 -34.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346809660.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.963 kcal (2) G-P(sol) polarization free energy of solvation -28.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds