Wall clock time and date at job start Tue Mar 31 2020 06:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47297 * 2 1 4 4 H 1.08998 * 109.47139 * 52.95453 * 3 2 1 5 5 F 1.39899 * 109.46794 * 292.96113 * 3 2 1 6 6 C 1.50696 * 109.47327 * 172.95693 * 3 2 1 7 7 O 1.21287 * 120.00088 * 237.69768 * 6 3 2 8 8 N 1.34784 * 119.99695 * 57.70067 * 6 3 2 9 9 C 1.46500 * 119.99840 * 5.32504 * 8 6 3 10 10 C 1.50703 * 109.46837 * 262.45433 * 9 8 6 11 11 H 1.07994 * 120.00437 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99648 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99752 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 119.99910 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47154 * 60.00162 * 14 12 10 16 16 H 1.48502 * 109.47209 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47495 * 300.00101 * 14 12 10 18 18 C 1.40027 * 119.99621 * 185.32747 * 8 6 3 19 19 C 1.38845 * 120.04890 * 352.96976 * 18 8 6 20 20 C 1.38112 * 119.95779 * 179.72935 * 19 18 8 21 21 C 1.38474 * 120.04309 * 0.24637 * 20 19 18 22 22 F 1.35106 * 119.95270 * 179.97438 * 21 20 19 23 23 C 1.38472 * 120.09259 * 359.97438 * 21 20 19 24 24 C 1.38114 * 120.04354 * 359.97438 * 23 21 20 25 25 H 1.08994 * 109.47630 * 300.00411 * 1 2 3 26 26 H 1.09001 * 109.46687 * 60.00449 * 1 2 3 27 27 H 1.09004 * 109.47412 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47127 * 239.99465 * 2 1 3 29 29 H 1.09001 * 109.46687 * 119.99551 * 2 1 3 30 30 H 1.08991 * 109.47373 * 22.45853 * 9 8 6 31 31 H 1.08998 * 109.46883 * 142.45735 * 9 8 6 32 32 H 0.97002 * 119.99542 * 179.97438 * 13 12 10 33 33 H 1.08002 * 120.02155 * 359.97438 * 19 18 8 34 34 H 1.07995 * 119.98135 * 180.27101 * 20 19 18 35 35 H 1.08002 * 119.97772 * 180.02562 * 23 21 20 36 36 H 1.07997 * 120.02263 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5775 1.9914 0.8202 5 9 1.7103 2.0536 -1.2145 6 6 3.5369 1.4461 0.1742 7 8 4.0380 2.0446 1.1025 8 7 4.3188 0.7841 -0.7016 9 6 3.7254 0.1597 -1.8866 10 6 3.4950 -1.3056 -1.6200 11 1 3.7633 -1.7292 -0.6635 12 6 2.9417 -2.1054 -2.5974 13 7 2.6154 -1.5896 -3.7624 14 14 2.6554 -3.9214 -2.2668 15 1 1.7333 -4.0752 -1.1129 16 1 2.0552 -4.5547 -3.4685 17 1 3.9505 -4.5783 -1.9565 18 6 5.6982 0.6933 -0.4788 19 6 6.2829 1.4044 0.5606 20 6 7.6428 1.3091 0.7821 21 6 8.4239 0.5090 -0.0347 22 9 9.7541 0.4175 0.1834 23 6 7.8435 -0.1974 -1.0747 24 6 6.4838 -0.1057 -1.2990 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 2.7746 0.6416 -2.1137 31 1 4.4016 0.2729 -2.7340 32 1 2.2265 -2.1524 -4.4501 33 1 5.6740 2.0286 1.1979 34 1 8.0973 1.8586 1.5932 35 1 8.4544 -0.8212 -1.7104 36 1 6.0315 -0.6571 -2.1099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346809661.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:15 Heat of formation + Delta-G solvation = -90.618550 kcal Electronic energy + Delta-G solvation = -22927.698047 eV Core-core repulsion = 19241.462050 eV Total energy + Delta-G solvation = -3686.235997 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.47535 -47.50768 -40.30789 -37.79678 -35.59825 -33.52832 -32.78726 -30.69042 -29.39464 -27.84785 -26.70445 -23.61741 -22.59399 -22.16218 -21.20616 -19.54250 -17.43033 -17.26911 -16.82819 -16.49483 -15.83399 -15.42389 -15.26376 -15.12310 -14.80134 -14.18171 -14.03833 -13.85526 -13.24798 -13.11434 -12.72901 -12.60685 -12.47512 -12.33830 -12.06790 -11.91186 -11.63743 -11.37114 -11.20516 -10.92513 -10.72479 -10.53541 -10.41440 -10.23630 -9.75891 -9.25095 -8.89052 -8.72517 -8.66411 -7.32283 -6.39837 -4.46877 1.49059 1.70019 2.82344 3.12483 3.19066 3.21078 3.36687 4.12188 4.18069 4.56215 4.74481 4.90213 5.03967 5.11394 5.24018 5.27209 5.45666 5.75268 5.76858 5.85605 5.89545 5.96511 6.11221 6.31498 6.40223 6.55813 6.62398 6.66273 6.69532 6.74720 6.98223 7.10516 7.21569 7.51677 7.56364 7.74115 7.88478 8.37497 8.58700 9.15975 10.65134 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.014344 B = 0.007249 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.506215 B = 3861.873779 C = 5268.968152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.195 4.195 3 C 0.094 3.906 4 H 0.104 0.896 5 F -0.193 7.193 6 C 0.497 3.503 7 O -0.534 6.534 8 N -0.520 5.520 9 C 0.208 3.792 10 C -0.544 4.544 11 H 0.067 0.933 12 C 0.072 3.928 13 N -0.877 5.877 14 Si 0.896 3.104 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.157 3.843 19 C -0.153 4.153 20 C -0.139 4.139 21 C 0.054 3.946 22 F -0.152 7.152 23 C -0.136 4.136 24 C -0.110 4.110 25 H 0.042 0.958 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.160 0.840 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.271 0.729 33 H 0.187 0.813 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.291 2.854 4.801 5.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.231 4.231 3 C 0.055 3.945 4 H 0.122 0.878 5 F -0.173 7.173 6 C 0.286 3.714 7 O -0.414 6.414 8 N -0.238 5.238 9 C 0.089 3.911 10 C -0.582 4.582 11 H 0.086 0.914 12 C -0.134 4.134 13 N -0.513 5.513 14 Si 0.723 3.277 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.198 1.198 18 C 0.061 3.939 19 C -0.173 4.173 20 C -0.158 4.158 21 C 0.034 3.966 22 F -0.131 7.131 23 C -0.155 4.155 24 C -0.130 4.130 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.177 0.823 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.203 0.797 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.390 3.129 5.010 6.068 hybrid contribution 0.107 -1.147 -0.011 1.152 sum 1.497 1.982 4.998 5.581 Atomic orbital electron populations 1.21674 0.95465 1.01847 1.01095 1.23157 0.96713 0.93615 1.09628 1.21804 0.90861 0.97394 0.84470 0.87796 1.92815 1.93266 1.84531 1.46737 1.21256 0.90028 0.78335 0.81769 1.90272 1.73817 1.44106 1.33250 1.46054 1.04583 1.48491 1.24719 1.20207 0.96247 0.93680 0.80921 1.21243 1.43106 0.92887 1.00988 0.91442 1.24930 0.94830 0.99035 0.94625 1.69917 1.40335 1.36654 1.04392 0.86562 0.78987 0.84144 0.78045 1.19730 1.20934 1.19845 1.18124 0.83509 0.96482 0.95785 1.22656 0.94500 1.01137 0.98977 1.21038 0.94125 1.00393 1.00275 1.17744 0.77272 1.02455 0.99171 1.91428 1.31627 1.95427 1.94624 1.20885 0.95340 1.01198 0.98106 1.21064 0.92186 0.98796 1.00981 0.93864 0.92342 0.92293 0.82283 0.90993 0.91030 0.93616 0.91946 0.79744 0.85359 0.85043 0.82948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.84 37.16 0.37 -1.79 16 2 C -0.19 -3.41 4.91 -26.73 -0.13 -3.54 16 3 C 0.09 1.64 3.35 -27.88 -0.09 1.54 16 4 H 0.10 1.55 8.12 -51.93 -0.42 1.13 16 5 F -0.19 -3.62 14.78 2.25 0.03 -3.59 16 6 C 0.50 9.75 6.86 -10.98 -0.08 9.67 16 7 O -0.53 -10.79 13.49 5.55 0.07 -10.71 16 8 N -0.52 -10.61 2.69 -114.72 -0.31 -10.92 16 9 C 0.21 4.56 3.96 -5.19 -0.02 4.54 16 10 C -0.54 -12.49 5.48 -34.44 -0.19 -12.68 16 11 H 0.07 1.58 7.81 -52.49 -0.41 1.17 16 12 C 0.07 1.70 5.36 -17.81 -0.10 1.60 16 13 N -0.88 -21.97 13.29 55.43 0.74 -21.24 16 14 Si 0.90 18.84 29.54 -169.99 -5.02 13.82 16 15 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 16 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 18 C 0.16 3.09 6.46 -83.66 -0.54 2.55 16 19 C -0.15 -2.82 9.05 -39.40 -0.36 -3.18 16 20 C -0.14 -2.29 10.02 -39.54 -0.40 -2.69 16 21 C 0.05 0.90 7.30 -39.41 -0.29 0.61 16 22 F -0.15 -2.47 17.27 2.25 0.04 -2.44 16 23 C -0.14 -2.27 10.02 -39.54 -0.40 -2.66 16 24 C -0.11 -2.05 8.98 -39.40 -0.35 -2.41 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.89 7.99 -51.93 -0.42 0.48 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.16 3.30 3.10 -51.93 -0.16 3.14 16 29 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 30 H 0.07 1.64 4.59 -51.93 -0.24 1.40 16 31 H 0.05 1.06 6.97 -51.93 -0.36 0.70 16 32 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 33 H 0.19 3.52 4.53 -56.20 -0.25 3.27 16 34 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 36 H 0.15 2.98 6.09 -52.49 -0.32 2.66 16 LS Contribution 302.02 15.07 4.55 4.55 Total: -1.00 -24.58 302.02 -6.30 -30.87 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -3.83 Total: 8.08 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -2.57 Total: -8.43 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.43 Total: -32.16 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.07 Total: -10.71 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.07 Total: -6.03 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.82 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -24.58 -6.30 -30.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346809661.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.745 kcal (2) G-P(sol) polarization free energy of solvation -24.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds