Wall clock time and date at job start Tue Mar 31 2020 06:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 114.00433 * 2 1 4 4 C 1.50693 * 109.47522 * 180.02562 * 3 2 1 5 5 N 1.30001 * 127.34387 * 90.01656 * 4 3 2 6 6 O 1.20652 * 112.32251 * 180.02562 * 5 4 3 7 7 C 1.33472 * 113.17627 * 0.02562 * 6 5 4 8 8 C 1.37439 * 106.32731 * 359.72056 * 7 6 5 9 9 C 1.47248 * 128.57183 * 180.25627 * 8 7 6 10 10 O 1.21538 * 119.99864 * 180.17865 * 9 8 7 11 11 O 1.34766 * 120.00420 * 0.17550 * 9 8 7 12 12 C 1.45202 * 116.99910 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.46683 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47069 * 299.99914 * 13 12 11 15 15 C 1.52998 * 109.47086 * 59.99907 * 13 12 11 16 16 C 1.50696 * 109.46708 * 180.02562 * 13 12 11 17 17 H 1.07998 * 120.00550 * 1.35837 * 16 13 12 18 18 C 1.37886 * 119.99744 * 181.36295 * 16 13 12 19 19 N 1.31510 * 120.00018 * 193.96162 * 18 16 13 20 20 Si 1.86797 * 119.99869 * 13.95793 * 18 16 13 21 21 H 1.48504 * 109.47157 * 84.56291 * 20 18 16 22 22 H 1.48504 * 109.46842 * 204.55697 * 20 18 16 23 23 H 1.48495 * 109.47332 * 324.55793 * 20 18 16 24 24 H 1.09002 * 109.46877 * 60.00624 * 1 2 3 25 25 H 1.09009 * 109.47322 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47510 * 300.00595 * 1 2 3 27 27 H 1.08996 * 109.47135 * 59.99215 * 3 2 1 28 28 H 1.09001 * 109.46514 * 299.99544 * 3 2 1 29 29 H 1.08002 * 126.83163 * 179.97438 * 7 6 5 30 30 H 1.08996 * 109.47083 * 299.99904 * 12 11 9 31 31 H 1.08996 * 109.47465 * 60.00241 * 12 11 9 32 32 H 1.08999 * 109.46972 * 69.32076 * 14 13 12 33 33 H 1.08999 * 109.47099 * 189.31784 * 14 13 12 34 34 H 1.08998 * 109.47340 * 309.31466 * 14 13 12 35 35 H 1.09005 * 109.47141 * 60.00442 * 15 13 12 36 36 H 1.09000 * 109.47253 * 179.97438 * 15 13 12 37 37 H 1.08995 * 109.47497 * 299.99842 * 15 13 12 38 38 H 0.96999 * 120.00091 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2982 1.1246 -1.0345 6 8 5.4599 1.0319 -0.7223 7 6 5.6491 1.0154 0.5989 8 6 4.4029 1.1202 1.1690 9 6 4.0467 1.1548 2.5973 10 8 2.8818 1.2487 2.9309 11 8 5.0123 1.0822 3.5346 12 6 4.5879 1.1214 4.9226 13 6 5.8138 1.0287 5.8335 14 6 6.5522 -0.2837 5.5629 15 6 6.7482 2.2071 5.5524 16 6 5.3732 1.0688 7.2741 17 1 4.3225 1.1299 7.5160 18 6 6.3117 1.0275 8.2834 19 7 5.9367 0.7865 9.5206 20 14 8.1160 1.3138 7.8933 21 1 8.3933 2.7726 7.8762 22 1 8.9560 0.6624 8.9303 23 1 8.4330 0.7340 6.5635 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6886 1.8464 0.8899 28 1 1.6887 1.8462 -0.8901 29 1 6.5938 0.9394 1.1167 30 1 4.0622 2.0565 5.1155 31 1 3.9218 0.2822 5.1228 32 1 7.0127 -0.2445 4.5757 33 1 7.3243 -0.4287 6.3185 34 1 5.8457 -1.1128 5.6016 35 1 6.2222 3.1421 5.7453 36 1 7.6213 2.1413 6.2016 37 1 7.0668 2.1777 4.5104 38 1 6.5969 0.7571 10.2306 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347230652.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:58 Heat of formation + Delta-G solvation = -51.517380 kcal Electronic energy + Delta-G solvation = -22510.881009 eV Core-core repulsion = 18937.428082 eV Total energy + Delta-G solvation = -3573.452927 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.21621 -39.98759 -38.14035 -36.92003 -35.15044 -34.24826 -32.40258 -31.74811 -28.63634 -26.89057 -26.33866 -25.95075 -25.13633 -24.51043 -21.50347 -21.09538 -19.21679 -18.32572 -18.05275 -17.19658 -16.50914 -16.31209 -16.02978 -15.94010 -15.88701 -15.35207 -15.08757 -14.22650 -13.45110 -13.35133 -12.94182 -12.79728 -12.63157 -12.40115 -12.14483 -11.98458 -11.82304 -11.73779 -11.71463 -10.71313 -10.45892 -10.41222 -10.35149 -10.26815 -10.11656 -10.00414 -9.91564 -9.81815 -9.16826 -8.70928 -8.51767 -6.20369 -4.19206 0.80390 1.35133 2.51456 2.91964 3.07820 3.23221 3.31090 3.37306 3.48610 3.85935 4.19339 4.32208 4.62488 4.89257 5.04166 5.09164 5.12019 5.16605 5.22049 5.37549 5.47665 5.52809 5.69474 5.82900 6.06448 6.18184 6.45670 6.51766 6.61848 6.70916 6.75715 6.81517 6.92098 7.15941 7.38158 7.64141 7.85431 7.98634 8.36482 8.81935 9.42619 10.92287 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.026754 B = 0.004074 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.311923 B = 6871.292082 C = 7644.847482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.382 6.382 3 C 0.141 3.859 4 C 0.068 3.932 5 N -0.339 5.339 6 O 0.103 5.897 7 C 0.024 3.976 8 C -0.226 4.226 9 C 0.538 3.462 10 O -0.499 6.499 11 O -0.348 6.348 12 C 0.095 3.905 13 C 0.043 3.957 14 C -0.140 4.140 15 C -0.146 4.146 16 C -0.520 4.520 17 H 0.076 0.924 18 C 0.079 3.921 19 N -0.889 5.889 20 Si 0.885 3.115 21 H -0.285 1.285 22 H -0.304 1.304 23 H -0.246 1.246 24 H 0.042 0.958 25 H 0.089 0.911 26 H 0.048 0.952 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.239 0.761 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.031 0.969 33 H 0.055 0.945 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.041 0.959 37 H 0.040 0.960 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.843 1.068 -19.190 19.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.300 6.300 3 C 0.063 3.937 4 C -0.095 4.095 5 N -0.045 5.045 6 O 0.041 5.959 7 C -0.057 4.057 8 C -0.232 4.232 9 C 0.381 3.619 10 O -0.389 6.389 11 O -0.265 6.265 12 C 0.023 3.977 13 C 0.042 3.958 14 C -0.197 4.197 15 C -0.203 4.203 16 C -0.558 4.558 17 H 0.094 0.906 18 C -0.124 4.124 19 N -0.525 5.525 20 Si 0.717 3.283 21 H -0.212 1.212 22 H -0.233 1.233 23 H -0.172 1.172 24 H 0.061 0.939 25 H 0.108 0.892 26 H 0.067 0.933 27 H 0.108 0.892 28 H 0.088 0.912 29 H 0.255 0.745 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.233 0.912 -20.150 20.428 hybrid contribution 0.637 0.441 1.026 1.286 sum -2.595 1.353 -19.123 19.346 Atomic orbital electron populations 1.22783 0.79938 1.03209 1.00336 1.87912 1.20424 1.26175 1.95535 1.20589 0.84045 0.86305 1.02719 1.24334 0.97429 1.01173 0.86532 1.73683 0.89511 1.18018 1.23322 1.84592 1.21538 1.66274 1.23480 1.26731 1.00887 0.95056 0.83036 1.21444 0.93211 1.15544 0.93010 1.19402 0.84032 0.73649 0.84784 1.90835 1.20050 1.45485 1.82514 1.86519 1.38244 1.82675 1.19021 1.23514 0.99304 1.01960 0.72915 1.18603 0.90448 0.92532 0.94170 1.22234 1.00079 0.98383 0.99050 1.22299 0.99430 0.99754 0.98837 1.20641 0.95505 1.52871 0.86765 0.90574 1.24912 0.98942 0.93801 0.94758 1.69937 1.34977 1.46984 1.00605 0.87286 0.85427 0.78112 0.77464 1.21214 1.23280 1.17193 0.93934 0.89222 0.93290 0.89245 0.91170 0.74475 0.91487 0.91344 0.94984 0.92637 0.93704 0.93119 0.94101 0.94144 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.43 16 2 O -0.38 -5.12 10.69 -35.23 -0.38 -5.50 16 3 C 0.14 1.73 6.20 36.00 0.22 1.95 16 4 C 0.07 0.92 7.21 -79.76 -0.58 0.34 16 5 N -0.34 -4.38 12.01 34.79 0.42 -3.97 16 6 O 0.10 1.12 11.06 18.71 0.21 1.33 16 7 C 0.02 0.24 12.24 30.44 0.37 0.62 16 8 C -0.23 -3.09 6.47 -102.91 -0.67 -3.76 16 9 C 0.54 8.93 7.95 34.39 0.27 9.20 16 10 O -0.50 -9.40 15.48 -19.30 -0.30 -9.70 16 11 O -0.35 -6.03 8.97 -40.67 -0.36 -6.39 16 12 C 0.10 1.91 4.26 37.16 0.16 2.06 16 13 C 0.04 0.95 0.58 -155.66 -0.09 0.86 16 14 C -0.14 -2.91 7.58 37.16 0.28 -2.63 16 15 C -0.15 -3.00 7.55 37.16 0.28 -2.72 16 16 C -0.52 -13.84 8.62 -34.44 -0.30 -14.14 16 17 H 0.08 2.20 7.99 -52.49 -0.42 1.79 16 18 C 0.08 2.17 5.32 -17.82 -0.09 2.08 16 19 N -0.89 -26.23 13.96 55.43 0.77 -25.46 16 20 Si 0.88 20.87 22.79 -169.99 -3.87 16.99 16 21 H -0.28 -6.66 7.10 56.52 0.40 -6.26 16 22 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.25 -5.31 4.65 56.52 0.26 -5.04 16 24 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.09 0.72 8.14 -51.92 -0.42 0.29 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.09 1.12 7.10 -51.93 -0.37 0.75 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.24 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 32 H 0.03 0.58 7.94 -51.93 -0.41 0.16 16 33 H 0.05 1.21 4.30 -51.93 -0.22 0.98 16 34 H 0.04 0.91 8.12 -51.93 -0.42 0.49 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.04 0.88 2.25 -51.93 -0.12 0.76 16 37 H 0.04 0.71 7.68 -51.93 -0.40 0.31 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 317.53 15.07 4.79 4.79 Total: -1.00 -31.74 317.53 -2.77 -34.51 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -5.02 Total: -1.90 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 0.98 Total: -4.70 kcal Atomic # 7 Polarization: -30.61 SS G_CDS: 1.19 Total: -29.42 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.83 Total: -20.27 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -3.87 Total: 16.99 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.74 -2.77 -34.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347230652.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.008 kcal (2) G-P(sol) polarization free energy of solvation -31.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds