Wall clock time and date at job start Tue Mar 31 2020 05:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86801 * 119.99523 * 2 1 4 4 H 1.48495 * 109.47306 * 270.00009 * 3 2 1 5 5 H 1.48498 * 109.47250 * 30.00435 * 3 2 1 6 6 H 1.48509 * 109.46659 * 150.00240 * 3 2 1 7 7 C 1.39937 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99149 * 197.87866 * 7 2 1 9 9 C 1.41434 * 120.00071 * 17.87903 * 7 2 1 10 10 C 1.40787 * 120.17464 * 204.44285 * 9 7 2 11 11 C 1.37710 * 120.03925 * 180.02562 * 10 9 7 12 12 C 1.38375 * 120.41221 * 359.69599 * 11 10 9 13 13 C 1.39885 * 120.35421 * 0.56540 * 12 11 10 14 14 C 1.47885 * 120.02388 * 179.73948 * 13 12 11 15 15 O 1.21546 * 120.00381 * 179.71728 * 14 13 12 16 16 N 1.34782 * 119.99761 * 359.72336 * 14 13 12 17 17 C 1.46501 * 119.99523 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.46669 * 179.97438 * 17 16 14 19 19 C 1.53003 * 109.46938 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.47175 * 180.02562 * 19 18 17 21 21 F 1.39903 * 109.47201 * 64.99929 * 20 19 18 22 22 F 1.39902 * 109.47341 * 185.00153 * 20 19 18 23 23 C 1.39031 * 119.94874 * 359.46057 * 13 12 11 24 24 H 0.97000 * 120.00312 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.98106 * 0.02834 * 10 9 7 26 26 H 1.07997 * 119.79764 * 179.97438 * 11 10 9 27 27 H 1.07993 * 119.82072 * 180.27674 * 12 11 10 28 28 H 0.96993 * 120.00404 * 359.97438 * 16 14 13 29 29 H 1.08996 * 109.47090 * 60.00160 * 17 16 14 30 30 H 1.08993 * 109.47311 * 299.99306 * 17 16 14 31 31 H 1.08992 * 109.47561 * 299.99735 * 18 17 16 32 32 H 1.09006 * 109.46760 * 60.00419 * 18 17 16 33 33 H 1.09002 * 109.47411 * 300.00141 * 19 18 17 34 34 H 1.08996 * 109.47017 * 60.00155 * 19 18 17 35 35 H 1.09002 * 109.47151 * 305.00360 * 20 19 18 36 36 H 1.08002 * 120.19948 * 180.23642 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4896 2.0466 -1.4000 5 1 1.4396 2.6527 0.7001 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0488 -1.2344 0.2866 9 6 1.3520 -2.4070 -0.3771 10 6 1.8263 -3.6499 0.0836 11 6 1.1859 -4.8119 -0.2853 12 6 0.0709 -4.7678 -1.1037 13 6 -0.4115 -3.5425 -1.5755 14 6 -1.6002 -3.5042 -2.4545 15 8 -2.0222 -2.4390 -2.8601 16 7 -2.2158 -4.6507 -2.8057 17 6 -3.3930 -4.6128 -3.6768 18 6 -3.8939 -6.0380 -3.9194 19 6 -5.1238 -5.9985 -4.8287 20 6 -5.6252 -7.4236 -5.0707 21 9 -6.0744 -7.9711 -3.8642 22 9 -6.6780 -7.3975 -5.9917 23 6 0.2239 -2.3602 -1.2129 24 1 -0.4850 0.8400 -0.0004 25 1 2.6930 -3.6922 0.7266 26 1 1.5533 -5.7633 0.0701 27 1 -0.4266 -5.6845 -1.3833 28 1 -1.8789 -5.5008 -2.4822 29 1 -3.1256 -4.1550 -4.6292 30 1 -4.1791 -4.0273 -3.2002 31 1 -3.1078 -6.6233 -4.3962 32 1 -4.1612 -6.4961 -2.9670 33 1 -5.9099 -5.4133 -4.3514 34 1 -4.8570 -5.5401 -5.7809 35 1 -4.8120 -8.0326 -5.4656 36 1 -0.1474 -1.4117 -1.5718 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350977809.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:38 Heat of formation + Delta-G solvation = -143.582497 kcal Electronic energy + Delta-G solvation = -20900.171063 eV Core-core repulsion = 17211.638377 eV Total energy + Delta-G solvation = -3688.532686 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.22014 -47.23188 -39.25943 -37.14166 -35.85858 -33.81049 -33.10385 -30.32679 -29.46356 -28.07314 -25.34418 -23.93163 -22.17547 -21.75374 -20.91918 -19.51336 -17.92831 -17.78582 -17.33804 -16.72703 -16.07286 -15.65645 -15.40749 -15.00140 -14.63876 -14.23401 -13.99672 -13.74242 -13.59771 -13.27250 -13.13235 -12.70548 -12.55045 -12.50266 -12.23096 -11.93901 -11.66465 -11.25299 -11.16378 -11.10680 -11.07253 -10.74609 -10.51396 -10.04738 -9.71506 -9.23844 -9.06344 -8.72400 -7.65771 -7.54542 -6.82134 -4.43557 2.18135 2.79525 3.06599 3.09816 3.14119 3.35019 3.69421 3.84036 3.90498 3.94298 4.23862 4.28212 4.61395 4.77706 4.88290 5.01847 5.27504 5.36243 5.54519 5.58251 5.67568 5.88408 5.98005 6.07819 6.24714 6.69536 6.79776 6.96551 6.99400 7.19075 7.35646 7.67516 7.72959 7.90043 8.05599 8.16534 8.48465 8.78055 8.81173 8.91097 10.12567 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.031174 B = 0.002948 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.961333 B = 9494.455378 C =10206.461284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.460 4.460 8 H 0.082 0.918 9 C 0.098 3.902 10 C -0.212 4.212 11 C -0.098 4.098 12 C -0.219 4.219 13 C -0.129 4.129 14 C 0.564 3.436 15 O -0.546 6.546 16 N -0.739 5.739 17 C 0.123 3.877 18 C -0.133 4.133 19 C -0.168 4.168 20 C 0.262 3.738 21 F -0.206 7.206 22 F -0.209 7.209 23 C -0.093 4.093 24 H 0.285 0.715 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.399 0.601 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.131 -11.219 -7.840 15.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.096 3.904 10 C -0.232 4.232 11 C -0.116 4.116 12 C -0.239 4.239 13 C -0.132 4.132 14 C 0.354 3.646 15 O -0.424 6.424 16 N -0.393 5.393 17 C -0.001 4.001 18 C -0.170 4.170 19 C -0.207 4.207 20 C 0.208 3.792 21 F -0.187 7.187 22 F -0.190 7.190 23 C -0.113 4.113 24 H 0.096 0.904 25 H 0.114 0.886 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.235 0.765 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.128 0.872 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.700 -10.285 -8.113 15.195 hybrid contribution 0.286 0.205 0.247 0.430 sum -7.414 -10.080 -7.865 14.780 Atomic orbital electron populations 1.69789 1.07590 1.29813 1.33488 1.25975 0.94777 1.01588 0.92302 0.86261 0.80363 0.80387 0.79454 1.19131 1.20212 1.18566 1.19604 0.98259 0.91060 1.39923 0.90029 1.17607 0.91196 0.92479 0.89154 1.21105 1.03541 0.92752 1.05766 1.20437 0.96000 0.96743 0.98420 1.20330 1.01293 0.94586 1.07673 1.19468 0.96565 0.95352 1.01807 1.18859 0.83296 0.82794 0.79607 1.90697 1.66294 1.29884 1.55512 1.45925 1.31020 1.09854 1.52513 1.21143 0.88439 0.95488 0.94999 1.21734 0.96712 0.97986 1.00612 1.22585 0.99960 0.94827 1.03298 1.21957 0.85829 0.96684 0.74722 1.92995 1.91033 1.87486 1.47222 1.92988 1.61604 1.97553 1.66861 1.21640 0.96482 0.96462 0.96692 0.90408 0.88596 0.88886 0.89253 0.76507 0.91658 0.91614 0.90523 0.90195 0.88972 0.88278 0.87183 0.84838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.66 10.96 55.55 0.61 -20.05 16 2 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 3 Si 0.91 18.68 29.60 -169.99 -5.03 13.65 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.46 -12.00 9.05 -37.73 -0.34 -12.34 16 8 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 9 C 0.10 2.58 5.57 -106.87 -0.60 1.98 16 10 C -0.21 -4.98 9.78 -38.81 -0.38 -5.36 16 11 C -0.10 -2.05 10.01 -39.72 -0.40 -2.45 16 12 C -0.22 -4.50 9.55 -38.91 -0.37 -4.87 16 13 C -0.13 -3.00 5.87 -105.04 -0.62 -3.62 16 14 C 0.56 12.13 7.77 -12.31 -0.10 12.03 16 15 O -0.55 -13.57 16.33 5.33 0.09 -13.49 16 16 N -0.74 -11.60 5.51 -61.24 -0.34 -11.94 16 17 C 0.12 1.54 5.67 -4.04 -0.02 1.52 16 18 C -0.13 -1.09 5.25 -26.73 -0.14 -1.23 16 19 C -0.17 -1.20 5.44 -26.73 -0.15 -1.34 16 20 C 0.26 1.91 5.29 37.16 0.20 2.11 16 21 F -0.21 -2.00 17.01 2.25 0.04 -1.97 16 22 F -0.21 -1.95 17.34 2.25 0.04 -1.91 16 23 C -0.09 -2.45 8.24 -38.44 -0.32 -2.77 16 24 H 0.28 6.90 8.30 -40.82 -0.34 6.57 16 25 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 26 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 27 H 0.09 1.49 6.38 -52.49 -0.33 1.16 16 28 H 0.40 5.32 6.49 -40.82 -0.26 5.05 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.68 7.93 -51.93 -0.41 0.26 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.13 3.84 5.74 -52.49 -0.30 3.53 16 LS Contribution 318.40 15.07 4.80 4.80 Total: -1.00 -30.59 318.40 -7.36 -37.95 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -4.24 Total: 7.55 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -3.32 Total: -14.60 kcal Atomic # 7 Polarization: -32.26 SS G_CDS: 0.27 Total: -31.98 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.09 Total: -13.49 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.08 Total: -3.88 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.59 -7.36 -37.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350977809.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.631 kcal (2) G-P(sol) polarization free energy of solvation -30.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds