Wall clock time and date at job start Tue Mar 31 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38306 * 119.80752 * 2 1 4 4 C 1.38218 * 120.19483 * 180.02562 * 3 2 1 5 5 F 1.35101 * 120.10283 * 180.02562 * 4 3 2 6 6 C 1.39905 * 119.80133 * 0.02562 * 4 3 2 7 7 C 1.47544 * 120.18395 * 180.02562 * 6 4 3 8 8 O 1.21582 * 120.00036 * 89.99912 * 7 6 4 9 9 N 1.34773 * 120.00057 * 269.99186 * 7 6 4 10 10 C 1.46507 * 119.99791 * 0.02562 * 9 7 6 11 11 C 1.46495 * 120.00361 * 180.02562 * 9 7 6 12 12 H 1.09000 * 109.47378 * 0.02562 * 11 9 7 13 13 C 1.53009 * 109.47194 * 240.00449 * 11 9 7 14 14 C 1.50702 * 109.47571 * 120.00380 * 11 9 7 15 15 H 1.08002 * 119.99446 * 359.97438 * 14 11 9 16 16 C 1.37871 * 120.00072 * 180.02562 * 14 11 9 17 17 N 1.31516 * 119.99826 * 179.72119 * 16 14 11 18 18 Si 1.86800 * 120.00406 * 359.97438 * 16 14 11 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 C 1.39895 * 119.62445 * 0.26770 * 6 4 3 23 23 F 1.35105 * 120.09794 * 179.72949 * 22 6 4 24 24 C 1.38226 * 119.80901 * 359.45392 * 22 6 4 25 25 H 1.08997 * 109.47058 * 89.99891 * 1 2 3 26 26 H 1.09000 * 109.46410 * 209.99491 * 1 2 3 27 27 H 1.08998 * 109.46733 * 329.99479 * 1 2 3 28 28 H 1.08005 * 119.89985 * 0.05057 * 3 2 1 29 29 H 1.08993 * 109.47215 * 269.99521 * 10 9 7 30 30 H 1.09001 * 109.46606 * 30.00126 * 10 9 7 31 31 H 1.09004 * 109.46774 * 149.99850 * 10 9 7 32 32 H 1.08990 * 109.47127 * 59.99623 * 13 11 9 33 33 H 1.08994 * 109.46846 * 179.97438 * 13 11 9 34 34 H 1.09001 * 109.46592 * 299.99497 * 13 11 9 35 35 H 0.96999 * 120.00128 * 180.27192 * 17 16 14 36 36 H 1.07995 * 119.90686 * 180.27279 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2001 0.0000 4 6 3.5767 1.2094 -0.0005 5 9 4.2464 2.3828 0.0000 6 6 4.2802 0.0001 -0.0016 7 6 5.7557 0.0002 -0.0016 8 8 6.3636 -0.0006 1.0513 9 7 6.4295 0.0012 -1.1688 10 6 5.6969 0.0026 -2.4376 11 6 7.8945 0.0007 -1.1689 12 1 8.2579 -0.0008 -0.1413 13 6 8.4049 1.2506 -1.8889 14 6 8.3965 -1.2291 -1.8806 15 1 7.6944 -1.9396 -2.2914 16 6 9.7519 -1.4478 -2.0064 17 7 10.1900 -2.5238 -2.6227 18 14 10.9663 -0.2193 -1.2952 19 1 11.2937 0.8034 -2.3210 20 1 10.3638 0.4431 -0.1105 21 1 12.2065 -0.9276 -0.8889 22 6 3.5768 -1.2091 -0.0078 23 9 4.2465 -2.3825 -0.0145 24 6 2.1946 -1.2000 -0.0014 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3632 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6497 2.1327 0.0008 29 1 5.5150 -1.0246 -2.7533 30 1 4.7447 0.5167 -2.3066 31 1 6.2862 0.5171 -3.1967 32 1 8.0418 2.1401 -1.3742 33 1 9.4948 1.2505 -1.8885 34 1 8.0415 1.2517 -2.9165 35 1 11.1436 -2.6797 -2.7077 36 1 1.6500 -2.1326 -0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518826466.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:57 Heat of formation + Delta-G solvation = -90.677472 kcal Electronic energy + Delta-G solvation = -22722.838704 eV Core-core repulsion = 19036.600152 eV Total energy + Delta-G solvation = -3686.238552 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.08235 -48.95909 -39.76723 -38.50791 -35.58750 -33.26224 -32.45291 -30.57096 -30.39953 -27.81172 -26.30645 -25.11694 -23.06123 -23.05441 -21.26060 -19.00202 -17.69091 -17.51606 -17.23709 -16.43319 -16.27630 -15.81384 -15.65381 -15.30178 -15.08720 -14.64810 -14.15918 -13.93254 -13.85122 -13.35363 -13.17931 -12.98382 -12.46071 -12.24399 -12.23630 -12.03834 -11.94394 -11.86644 -11.66361 -11.56147 -11.15876 -10.70180 -10.15140 -9.71198 -9.43567 -9.28599 -8.93976 -8.89946 -8.63353 -7.82196 -6.14158 -4.15192 0.65237 0.80597 2.95059 3.06096 3.23861 3.37594 3.40470 3.56568 3.72560 4.15703 4.32665 4.35582 4.69000 4.71242 4.84556 5.07058 5.18340 5.23207 5.31393 5.55985 5.64264 5.66078 5.69990 5.81977 5.94959 6.03591 6.17927 6.24217 6.31703 6.45014 6.54097 6.81904 7.05496 7.25495 7.59729 8.05687 8.42687 8.69029 8.87643 9.46024 10.98500 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.028306 B = 0.005208 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.950810 B = 5375.243679 C = 5833.616984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.022 4.022 3 C -0.170 4.170 4 C 0.162 3.838 5 F -0.122 7.122 6 C -0.187 4.187 7 C 0.555 3.445 8 O -0.533 6.533 9 N -0.571 5.571 10 C 0.087 3.913 11 C 0.229 3.771 12 H 0.064 0.936 13 C -0.161 4.161 14 C -0.528 4.528 15 H 0.080 0.920 16 C 0.077 3.923 17 N -0.894 5.894 18 Si 0.882 3.118 19 H -0.276 1.276 20 H -0.263 1.263 21 H -0.293 1.293 22 C 0.168 3.832 23 F -0.115 7.115 24 C -0.169 4.169 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.146 0.854 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.035 0.965 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.266 0.734 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.131 6.964 1.965 21.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.023 4.023 3 C -0.189 4.189 4 C 0.142 3.858 5 F -0.100 7.100 6 C -0.192 4.192 7 C 0.339 3.661 8 O -0.411 6.411 9 N -0.301 5.301 10 C -0.057 4.057 11 C 0.127 3.873 12 H 0.082 0.918 13 C -0.219 4.219 14 C -0.566 4.566 15 H 0.098 0.902 16 C -0.126 4.126 17 N -0.531 5.531 18 Si 0.712 3.288 19 H -0.203 1.203 20 H -0.188 1.188 21 H -0.220 1.220 22 C 0.148 3.852 23 F -0.093 7.093 24 C -0.187 4.187 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.164 0.836 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -19.546 6.853 2.430 20.855 hybrid contribution 1.084 0.500 0.139 1.202 sum -18.462 7.353 2.569 20.038 Atomic orbital electron populations 1.20860 0.89459 1.03651 1.03224 1.19602 0.96721 0.91123 0.94819 1.20948 0.91406 0.99792 1.06736 1.17259 0.89551 0.79958 0.99072 1.91570 1.80711 1.44518 1.93184 1.20169 0.96200 0.92495 1.10382 1.17701 0.85289 0.78220 0.84877 1.90774 1.68712 1.50609 1.31017 1.47848 1.08491 1.69258 1.04508 1.21617 0.95388 1.01894 0.86786 1.19388 0.74510 0.94488 0.98884 0.91822 1.22458 1.00386 0.98010 1.01077 1.21122 0.92906 1.05619 1.36937 0.90224 1.24845 0.98014 0.95353 0.94390 1.69871 1.14709 1.26332 1.42181 0.86932 0.80717 0.80960 0.80225 1.20313 1.18776 1.22032 1.17311 0.89541 0.80226 0.98137 1.91624 1.80588 1.44223 1.92904 1.20999 0.91484 0.99861 1.06403 0.90112 0.90677 0.90738 0.83647 0.92448 0.93082 0.90230 0.94624 0.92933 0.92390 0.92399 0.83536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 10.00 36.01 0.36 -0.25 16 2 C -0.02 -0.20 5.88 -104.57 -0.62 -0.82 16 3 C -0.17 -1.75 9.65 -39.56 -0.38 -2.13 16 4 C 0.16 2.33 6.85 -38.96 -0.27 2.06 16 5 F -0.12 -1.91 16.83 2.25 0.04 -1.87 16 6 C -0.19 -3.23 3.93 -104.86 -0.41 -3.64 16 7 C 0.55 12.28 6.40 -12.47 -0.08 12.20 16 8 O -0.53 -13.80 16.43 5.29 0.09 -13.71 16 9 N -0.57 -12.66 2.75 -176.48 -0.49 -13.14 16 10 C 0.09 1.54 9.50 59.85 0.57 2.11 16 11 C 0.23 5.75 2.23 -69.08 -0.15 5.60 16 12 H 0.06 1.77 5.95 -51.93 -0.31 1.46 16 13 C -0.16 -3.58 8.65 37.16 0.32 -3.26 16 14 C -0.53 -14.96 8.95 -34.44 -0.31 -15.26 16 15 H 0.08 2.43 7.89 -52.49 -0.41 2.01 16 16 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 17 N -0.89 -27.20 13.96 55.43 0.77 -26.43 16 18 Si 0.88 22.15 24.37 -169.99 -4.14 18.01 16 19 H -0.28 -6.60 6.88 56.52 0.39 -6.21 16 20 H -0.26 -6.56 6.52 56.52 0.37 -6.19 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 22 C 0.17 2.58 7.29 -38.97 -0.28 2.29 16 23 F -0.12 -2.06 16.83 2.25 0.04 -2.02 16 24 C -0.17 -1.83 9.65 -39.56 -0.38 -2.21 16 25 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 27 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 28 H 0.15 1.09 8.06 -52.48 -0.42 0.66 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.76 6.54 -51.93 -0.34 0.42 16 31 H 0.08 1.36 6.43 -51.93 -0.33 1.02 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 1.20 3.28 -51.93 -0.17 1.03 16 34 H 0.06 1.18 6.66 -51.93 -0.35 0.83 16 35 H 0.27 7.59 8.31 -40.82 -0.34 7.26 16 36 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 307.88 15.07 4.64 4.64 Total: -1.00 -34.11 307.88 -4.83 -38.94 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: -4.05 Total: -3.24 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -1.73 Total: -1.17 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.29 Total: -39.57 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.09 Total: -13.71 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.08 Total: -3.89 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.14 Total: 18.01 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.11 -4.83 -38.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518826466.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.738 kcal (2) G-P(sol) polarization free energy of solvation -34.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds