Wall clock time and date at job start Tue Mar 31 2020 05:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38306 * 119.80752 * 2 1 4 4 C 1.38218 * 120.19483 * 180.02562 * 3 2 1 5 5 F 1.35101 * 120.10283 * 180.02562 * 4 3 2 6 6 C 1.39905 * 119.80133 * 0.02562 * 4 3 2 7 7 C 1.47544 * 120.18395 * 180.02562 * 6 4 3 8 8 O 1.21582 * 120.00036 * 89.99912 * 7 6 4 9 9 N 1.34773 * 120.00057 * 269.99186 * 7 6 4 10 10 C 1.46507 * 119.99791 * 0.02562 * 9 7 6 11 11 C 1.46495 * 120.00361 * 180.02562 * 9 7 6 12 12 H 1.09000 * 109.47378 * 0.02562 * 11 9 7 13 13 C 1.53009 * 109.47194 * 240.00449 * 11 9 7 14 14 C 1.50702 * 109.47571 * 120.00380 * 11 9 7 15 15 H 1.08002 * 119.99446 * 359.97438 * 14 11 9 16 16 C 1.37871 * 120.00072 * 180.02562 * 14 11 9 17 17 N 1.31516 * 119.99826 * 179.72119 * 16 14 11 18 18 Si 1.86800 * 120.00406 * 359.97438 * 16 14 11 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 C 1.39895 * 119.62445 * 0.26770 * 6 4 3 23 23 F 1.35105 * 120.09794 * 179.72949 * 22 6 4 24 24 C 1.38226 * 119.80901 * 359.45392 * 22 6 4 25 25 H 1.08997 * 109.47058 * 89.99891 * 1 2 3 26 26 H 1.09000 * 109.46410 * 209.99491 * 1 2 3 27 27 H 1.08998 * 109.46733 * 329.99479 * 1 2 3 28 28 H 1.08005 * 119.89985 * 0.05057 * 3 2 1 29 29 H 1.08993 * 109.47215 * 269.99521 * 10 9 7 30 30 H 1.09001 * 109.46606 * 30.00126 * 10 9 7 31 31 H 1.09004 * 109.46774 * 149.99850 * 10 9 7 32 32 H 1.08990 * 109.47127 * 59.99623 * 13 11 9 33 33 H 1.08994 * 109.46846 * 179.97438 * 13 11 9 34 34 H 1.09001 * 109.46592 * 299.99497 * 13 11 9 35 35 H 0.96999 * 120.00128 * 180.27192 * 17 16 14 36 36 H 1.07995 * 119.90686 * 180.27279 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2001 0.0000 4 6 3.5767 1.2094 -0.0005 5 9 4.2464 2.3828 0.0000 6 6 4.2802 0.0001 -0.0016 7 6 5.7557 0.0002 -0.0016 8 8 6.3636 -0.0006 1.0513 9 7 6.4295 0.0012 -1.1688 10 6 5.6969 0.0026 -2.4376 11 6 7.8945 0.0007 -1.1689 12 1 8.2579 -0.0008 -0.1413 13 6 8.4049 1.2506 -1.8889 14 6 8.3965 -1.2291 -1.8806 15 1 7.6944 -1.9396 -2.2914 16 6 9.7519 -1.4478 -2.0064 17 7 10.1900 -2.5238 -2.6227 18 14 10.9663 -0.2193 -1.2952 19 1 11.2937 0.8034 -2.3210 20 1 10.3638 0.4431 -0.1105 21 1 12.2065 -0.9276 -0.8889 22 6 3.5768 -1.2091 -0.0078 23 9 4.2465 -2.3825 -0.0145 24 6 2.1946 -1.2000 -0.0014 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3632 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6497 2.1327 0.0008 29 1 5.5150 -1.0246 -2.7533 30 1 4.7447 0.5167 -2.3066 31 1 6.2862 0.5171 -3.1967 32 1 8.0418 2.1401 -1.3742 33 1 9.4948 1.2505 -1.8885 34 1 8.0415 1.2517 -2.9165 35 1 11.1436 -2.6797 -2.7077 36 1 1.6500 -2.1326 -0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518826466.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:56 Heat of formation + Delta-G solvation = -113.791077 kcal Electronic energy + Delta-G solvation = -22723.840985 eV Core-core repulsion = 19036.600152 eV Total energy + Delta-G solvation = -3687.240833 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.21565 -50.19453 -41.24291 -39.70655 -37.44800 -34.96904 -33.88933 -32.19663 -31.52742 -28.72151 -27.86482 -27.20819 -24.37001 -24.06111 -22.68319 -20.64880 -19.18178 -18.74214 -18.59465 -18.25031 -17.83480 -17.12390 -16.91269 -16.64520 -16.50878 -16.07001 -15.75583 -15.25508 -14.96040 -14.68530 -14.34524 -14.22426 -14.17168 -14.04509 -13.71451 -13.31626 -13.15338 -12.94373 -12.93887 -12.72786 -12.66489 -12.48415 -12.12489 -11.65398 -11.46539 -11.09874 -10.84932 -9.93131 -9.92517 -9.63744 -8.40117 -6.46087 -0.36897 -0.15715 1.22112 1.29968 1.32273 1.41195 1.96258 2.19474 2.23399 2.62687 2.93972 3.20432 3.23274 3.59412 3.72717 4.03348 4.16400 4.32618 4.43073 4.48459 4.51235 4.55925 4.58636 4.65051 4.71137 4.78520 4.92512 4.94335 4.95360 5.19949 5.29281 5.31310 5.36652 5.54388 5.65891 6.09496 6.43429 6.55793 6.94957 7.20534 8.76029 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.028306 B = 0.005208 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.950810 B = 5375.243679 C = 5833.616984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.000 4.000 3 C -0.148 4.148 4 C 0.147 3.853 5 F -0.135 7.135 6 C -0.220 4.220 7 C 0.548 3.452 8 O -0.588 6.588 9 N -0.580 5.580 10 C 0.088 3.912 11 C 0.229 3.771 12 H 0.030 0.970 13 C -0.153 4.153 14 C -0.530 4.530 15 H 0.043 0.957 16 C 0.026 3.974 17 N -0.936 5.936 18 Si 0.941 3.059 19 H -0.247 1.247 20 H -0.266 1.266 21 H -0.291 1.291 22 C 0.139 3.861 23 F -0.143 7.143 24 C -0.152 4.152 25 H 0.100 0.900 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.184 0.816 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.270 0.730 36 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.402 9.046 1.635 25.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.000 4.000 3 C -0.166 4.166 4 C 0.127 3.873 5 F -0.113 7.113 6 C -0.225 4.225 7 C 0.335 3.665 8 O -0.469 6.469 9 N -0.309 5.309 10 C -0.055 4.055 11 C 0.126 3.874 12 H 0.048 0.952 13 C -0.210 4.210 14 C -0.569 4.569 15 H 0.061 0.939 16 C -0.173 4.173 17 N -0.575 5.575 18 Si 0.768 3.232 19 H -0.172 1.172 20 H -0.191 1.191 21 H -0.219 1.219 22 C 0.119 3.881 23 F -0.121 7.121 24 C -0.170 4.170 25 H 0.119 0.881 26 H 0.108 0.892 27 H 0.112 0.888 28 H 0.202 0.798 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -22.855 8.948 2.062 24.631 hybrid contribution 1.897 -0.224 0.250 1.927 sum -20.958 8.724 2.312 22.819 Atomic orbital electron populations 1.21032 0.85689 1.05439 1.04910 1.20166 0.98955 0.89672 0.91238 1.21400 0.89347 1.02005 1.03880 1.17531 0.90922 0.78482 1.00358 1.91533 1.81342 1.44948 1.93474 1.19889 0.92948 0.94759 1.14875 1.18501 0.87649 0.76503 0.83857 1.90711 1.70634 1.52869 1.32719 1.47949 1.07644 1.69016 1.06276 1.21775 0.96636 1.01969 0.85073 1.19102 0.76855 0.94653 0.96767 0.95191 1.22308 0.99975 0.96892 1.01874 1.21259 0.92627 1.06346 1.36647 0.93904 1.25633 0.99863 0.97158 0.94637 1.69994 1.15415 1.28282 1.43780 0.85975 0.78050 0.79219 0.79993 1.17235 1.19053 1.21858 1.17729 0.91163 0.78752 1.00418 1.91550 1.81508 1.45591 1.93480 1.21386 0.89281 1.02187 1.04189 0.88138 0.89220 0.88786 0.79834 0.93366 0.89730 0.89400 0.92591 0.93373 0.90618 0.92034 0.80559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 10.00 71.24 0.71 0.23 16 2 C 0.00 0.00 5.88 -19.83 -0.12 -0.11 16 3 C -0.15 -2.43 9.65 22.28 0.22 -2.21 16 4 C 0.15 4.02 6.85 22.67 0.16 4.17 16 5 F -0.13 -4.10 16.83 44.97 0.76 -3.34 16 6 C -0.22 -7.66 3.93 -20.02 -0.08 -7.74 16 7 C 0.55 25.40 6.40 86.70 0.56 25.95 16 8 O -0.59 -32.38 16.43 -3.98 -0.07 -32.45 16 9 N -0.58 -26.62 2.75 -830.54 -2.29 -28.91 16 10 C 0.09 3.15 9.50 127.77 1.21 4.36 16 11 C 0.23 11.89 2.23 44.25 0.10 11.99 16 12 H 0.03 1.76 5.95 -2.39 -0.01 1.75 16 13 C -0.15 -6.66 8.65 71.99 0.62 -6.04 16 14 C -0.53 -31.40 8.95 25.60 0.23 -31.17 16 15 H 0.04 2.78 7.89 -2.91 -0.02 2.75 16 16 C 0.03 1.57 5.45 84.65 0.46 2.03 16 17 N -0.94 -58.72 13.96 21.45 0.30 -58.43 16 18 Si 0.94 46.29 24.37 68.60 1.67 47.97 16 19 H -0.25 -10.99 6.88 99.48 0.68 -10.30 16 20 H -0.27 -13.10 6.52 99.48 0.65 -12.45 16 21 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 22 C 0.14 4.26 7.29 22.67 0.17 4.43 16 23 F -0.14 -5.37 16.83 44.97 0.76 -4.61 16 24 C -0.15 -2.84 9.65 22.28 0.22 -2.63 16 25 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 26 H 0.09 0.23 8.08 -2.39 -0.02 0.21 16 27 H 0.09 0.15 8.08 -2.39 -0.02 0.13 16 28 H 0.18 1.65 8.06 -2.91 -0.02 1.62 16 29 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.08 2.45 6.54 -2.39 -0.02 2.43 16 31 H 0.09 2.96 6.43 -2.38 -0.02 2.95 16 32 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.05 2.13 3.28 -2.39 -0.01 2.12 16 34 H 0.07 2.99 6.66 -2.39 -0.02 2.97 16 35 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 36 H 0.18 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -81.05 307.88 6.62 -74.43 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: 1.03 Total: 2.08 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 4.45 Total: 3.26 kcal Atomic # 7 Polarization: -85.34 SS G_CDS: -1.99 Total: -87.33 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -0.07 Total: -32.45 kcal Atomic # 9 Polarization: -9.47 SS G_CDS: 1.51 Total: -7.96 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.67 Total: 47.97 kcal Total: -81.05 6.62 -74.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518826466.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.357 kcal (2) G-P(sol) polarization free energy of solvation -81.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds