Wall clock time and date at job start Tue Mar 31 2020 06:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46578 * 2 1 4 4 H 1.08997 * 109.47597 * 305.00099 * 3 2 1 5 5 C 1.50704 * 109.47269 * 184.99982 * 3 2 1 6 6 H 1.07990 * 119.99757 * 240.00271 * 5 3 2 7 7 C 1.37877 * 119.99796 * 60.00009 * 5 3 2 8 8 N 1.31509 * 120.00000 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99763 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47146 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.46834 * 119.99975 * 9 7 5 12 12 H 1.48504 * 109.47022 * 239.99877 * 9 7 5 13 13 O 1.45199 * 109.47158 * 65.00107 * 3 2 1 14 14 C 1.34234 * 116.99947 * 269.99827 * 13 3 2 15 15 O 1.20822 * 120.00090 * 0.02562 * 14 13 3 16 16 C 1.50702 * 119.99997 * 179.72219 * 14 13 3 17 17 O 1.42896 * 109.47270 * 180.02562 * 16 14 13 18 18 C 1.42897 * 114.00195 * 180.02562 * 17 16 14 19 19 C 1.50697 * 109.47263 * 179.97438 * 18 17 16 20 20 C 1.41381 * 126.79987 * 359.71294 * 19 18 17 21 21 C 1.35451 * 103.98219 * 179.88929 * 20 19 18 22 22 C 1.50708 * 126.77646 * 180.09914 * 21 20 19 23 23 O 1.34038 * 106.45041 * 0.36314 * 21 20 19 24 24 N 1.20922 * 111.56250 * 359.75234 * 23 21 20 25 25 H 1.09003 * 109.46186 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47046 * 299.99354 * 1 2 3 27 27 H 1.08996 * 109.47256 * 60.00501 * 1 2 3 28 28 H 1.08997 * 109.47046 * 240.00645 * 2 1 3 29 29 H 1.08996 * 109.47256 * 119.99498 * 2 1 3 30 30 H 0.96999 * 119.99995 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47201 * 300.00712 * 16 14 13 32 32 H 1.09001 * 109.46880 * 60.00295 * 16 14 13 33 33 H 1.09000 * 109.47065 * 299.99740 * 18 17 16 34 34 H 1.09001 * 109.47510 * 59.99669 * 18 17 16 35 35 H 1.07994 * 128.00897 * 0.02562 * 20 19 18 36 36 H 1.08993 * 109.47112 * 180.29774 * 22 21 20 37 37 H 1.09002 * 109.46700 * 300.29239 * 22 21 20 38 38 H 1.08996 * 109.47056 * 60.28970 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4445 -0.1238 6 1 4.1470 1.8891 0.6523 7 6 4.1432 0.8787 -1.2280 8 7 3.4062 0.3377 -2.1733 9 14 6.0050 0.8805 -1.3811 10 1 6.5986 1.5458 -0.1937 11 1 6.4962 -0.5185 -1.4626 12 1 6.3999 1.6162 -2.6092 13 8 1.6557 2.0917 1.2407 14 6 0.4725 2.7254 1.2560 15 8 -0.2195 2.7369 0.2656 16 6 0.0041 3.4167 2.5105 17 8 -1.2737 4.0123 2.2774 18 6 -1.8109 4.6978 3.4103 19 6 -3.1524 5.2841 3.0531 20 6 -3.8088 5.1980 1.8039 21 6 -4.9666 5.8744 1.9952 22 6 -6.0594 6.0974 0.9817 23 8 -4.9460 6.3113 3.2623 24 7 -3.9339 5.9748 3.8320 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.8293 -0.0600 -2.9502 31 1 -0.0764 2.6889 3.3179 32 1 0.7204 4.1898 2.7883 33 1 -1.9287 3.9970 4.2368 34 1 -1.1323 5.4979 3.7063 35 1 -3.4672 4.7051 0.9058 36 1 -6.8602 6.6827 1.4335 37 1 -5.6553 6.6357 0.1243 38 1 -6.4529 5.1352 0.6540 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525462988.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:53 Heat of formation + Delta-G solvation = -75.258596 kcal Electronic energy + Delta-G solvation = -21867.877839 eV Core-core repulsion = 18293.395415 eV Total energy + Delta-G solvation = -3574.482424 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.07369 -39.74316 -38.05627 -35.72123 -34.36529 -33.55241 -33.50425 -31.41588 -29.19613 -27.96793 -27.40786 -26.47169 -23.27397 -23.01548 -21.12673 -20.42638 -19.47345 -17.86921 -17.62418 -17.02968 -16.86494 -16.47064 -16.03103 -15.54792 -15.03548 -14.76040 -14.43802 -13.81961 -13.63932 -13.53426 -13.17771 -12.88595 -12.77965 -12.56510 -12.05094 -11.88127 -11.48357 -11.37965 -11.26473 -11.18930 -10.99380 -10.67498 -10.46759 -10.30124 -9.81550 -9.76942 -9.60063 -9.43657 -9.38488 -8.83649 -8.48872 -6.21639 -4.28909 1.29432 2.07558 2.67308 2.93381 2.96351 3.21570 3.28921 3.33957 3.81773 4.24695 4.31770 4.58259 4.85879 4.93948 5.04508 5.08709 5.10529 5.13762 5.21206 5.24460 5.27663 5.51909 5.60421 5.65975 5.98548 6.21198 6.27860 6.43251 6.81476 6.84235 6.94820 7.14091 7.21662 7.58882 7.70434 7.91833 8.07859 8.11906 8.59911 8.85148 9.36431 10.85182 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.033157 B = 0.003013 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.261349 B = 9289.474790 C = 9560.791397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.223 3.777 4 H 0.048 0.952 5 C -0.522 4.522 6 H 0.070 0.930 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.912 3.088 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.282 1.282 13 O -0.355 6.355 14 C 0.452 3.548 15 O -0.496 6.496 16 C 0.070 3.930 17 O -0.359 6.359 18 C 0.144 3.856 19 C 0.020 3.980 20 C -0.203 4.203 21 C -0.041 4.041 22 C -0.072 4.072 23 O 0.099 5.901 24 N -0.364 5.364 25 H 0.033 0.967 26 H 0.031 0.969 27 H 0.053 0.947 28 H 0.109 0.891 29 H 0.042 0.958 30 H 0.266 0.734 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.179 0.821 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.991 8.426 8.536 18.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.171 3.829 4 H 0.066 0.934 5 C -0.560 4.560 6 H 0.088 0.912 7 C -0.140 4.140 8 N -0.525 5.525 9 Si 0.739 3.261 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.207 1.207 13 O -0.272 6.272 14 C 0.293 3.707 15 O -0.384 6.384 16 C -0.007 4.007 17 O -0.278 6.278 18 C 0.067 3.933 19 C -0.138 4.138 20 C -0.225 4.225 21 C -0.105 4.105 22 C -0.130 4.130 23 O 0.032 5.968 24 N -0.069 5.069 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.127 0.873 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.197 0.803 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.140 8.686 9.116 18.934 hybrid contribution 1.203 -0.469 -0.754 1.495 sum -12.936 8.217 8.363 17.458 Atomic orbital electron populations 1.21861 0.98287 0.99052 1.00807 1.22031 0.92691 0.99271 1.03432 1.20733 0.95054 0.88746 0.78397 0.93380 1.21074 0.89567 1.39026 1.06307 0.91228 1.24891 0.99300 0.94736 0.95044 1.69895 1.35337 1.37804 1.09443 0.86220 0.83800 0.77898 0.78229 1.19476 1.20692 1.20747 1.86446 1.33593 1.62542 1.44577 1.22633 0.81409 0.77700 0.88923 1.90631 1.55153 1.57220 1.35405 1.21745 0.85645 0.98083 0.95253 1.87909 1.33545 1.71528 1.34780 1.20300 0.88650 0.95858 0.88538 1.23125 0.98429 1.00094 0.92146 1.22486 0.94294 1.05241 1.00461 1.24544 0.99366 0.99615 0.86926 1.20333 0.94166 1.04041 0.94444 1.84795 1.32362 1.58047 1.21639 1.73757 0.95975 1.16329 1.20885 0.94775 0.94958 0.92777 0.87260 0.93910 0.92391 0.89217 0.89105 0.90555 0.90525 0.80348 0.90021 0.89063 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.56 37.16 0.32 -2.80 16 2 C -0.14 -3.34 5.49 -26.73 -0.15 -3.49 16 3 C 0.22 5.83 2.25 -27.88 -0.06 5.77 16 4 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 5 C -0.52 -14.37 8.90 -34.44 -0.31 -14.67 16 6 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.75 11.29 55.43 0.63 -24.13 16 9 Si 0.91 20.75 29.54 -169.99 -5.02 15.73 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 13 O -0.35 -8.17 9.81 -39.27 -0.39 -8.55 16 14 C 0.45 9.21 6.49 36.01 0.23 9.44 16 15 O -0.50 -11.54 13.64 -25.47 -0.35 -11.89 16 16 C 0.07 1.01 6.53 36.01 0.24 1.24 16 17 O -0.36 -5.34 9.37 -55.18 -0.52 -5.85 16 18 C 0.14 1.68 6.56 36.00 0.24 1.92 16 19 C 0.02 0.26 7.28 -82.10 -0.60 -0.34 16 20 C -0.20 -2.50 10.45 -39.38 -0.41 -2.92 16 21 C -0.04 -0.42 7.49 -35.30 -0.26 -0.68 16 22 C -0.07 -0.42 10.45 36.01 0.38 -0.05 16 23 O 0.10 1.17 11.20 17.18 0.19 1.37 16 24 N -0.36 -4.84 12.07 33.42 0.40 -4.43 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.03 0.67 6.06 -51.93 -0.31 0.36 16 27 H 0.05 1.24 7.80 -51.93 -0.40 0.84 16 28 H 0.11 2.91 5.95 -51.93 -0.31 2.60 16 29 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.18 2.24 8.05 -52.49 -0.42 1.81 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 328.39 15.07 4.95 4.95 Total: -1.00 -32.04 328.39 -5.76 -37.80 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -5.17 Total: -0.02 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -0.48 Total: -4.97 kcal Atomic # 7 Polarization: -29.59 SS G_CDS: 1.03 Total: -28.56 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -1.06 Total: -24.92 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.04 -5.76 -37.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525462988.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.458 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds