Wall clock time and date at job start Tue Mar 31 2020 06:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47767 * 344.90748 * 3 2 1 5 5 C 1.36939 * 120.00311 * 264.64801 * 4 3 2 6 6 H 1.07995 * 120.00107 * 196.37770 * 5 4 3 7 7 C 1.38809 * 119.99497 * 16.37119 * 5 4 3 8 8 N 1.31625 * 120.00175 * 22.67073 * 7 5 4 9 9 Si 1.86802 * 119.99918 * 202.66119 * 7 5 4 10 10 H 1.48497 * 109.46851 * 60.00704 * 9 7 5 11 11 H 1.48504 * 109.47108 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47332 * 300.00641 * 9 7 5 13 13 C 1.46500 * 120.00073 * 84.64202 * 4 3 2 14 14 C 1.50704 * 109.47404 * 270.00578 * 13 4 3 15 15 C 1.38341 * 119.94049 * 270.02337 * 14 13 4 16 16 C 1.38284 * 120.23830 * 179.97438 * 15 14 13 17 17 C 1.38056 * 120.11868 * 359.97438 * 16 15 14 18 18 C 1.39282 * 119.87744 * 0.02562 * 17 16 15 19 19 C 1.48466 * 120.11270 * 180.02562 * 18 17 16 20 20 N 1.34046 * 126.67062 * 179.68971 * 19 18 17 21 21 N 1.28986 * 107.26938 * 179.83148 * 20 19 18 22 22 N 1.28733 * 108.94002 * 0.43744 * 21 20 19 23 23 H 0.97002 * 125.33780 * 179.74771 * 22 21 20 24 24 N 1.28873 * 109.31716 * 359.71696 * 22 21 20 25 25 C 1.38004 * 119.94351 * 89.99814 * 14 13 4 26 26 H 4.40644 * 5.51375 * 179.97438 * 4 1 2 27 27 H 1.09004 * 109.47151 * 224.90473 * 3 2 1 28 28 H 1.09008 * 109.47226 * 104.90880 * 3 2 1 29 29 H 0.96998 * 119.99736 * 179.97438 * 8 7 5 30 30 H 1.09005 * 109.47515 * 150.00425 * 13 4 3 31 31 H 1.09004 * 109.46901 * 30.00359 * 13 4 3 32 32 H 1.08001 * 119.88046 * 359.97438 * 15 14 13 33 33 H 1.08001 * 119.94539 * 180.02562 * 16 15 14 34 34 H 1.07998 * 120.06348 * 180.28073 * 17 16 15 35 35 H 1.08004 * 120.06007 * 0.02562 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1351 -1.3326 0.3596 5 6 3.4678 -1.6127 1.6581 6 1 4.0666 -2.4820 1.8866 7 6 3.0356 -0.7792 2.6805 8 7 1.9812 -0.0116 2.5026 9 14 3.9501 -0.7471 4.3090 10 1 5.3571 -0.3320 4.0784 11 1 3.2929 0.2178 5.2269 12 1 3.9270 -2.1019 4.9165 13 6 3.2681 -2.3663 -0.6699 14 6 1.9802 -3.1423 -0.7721 15 6 1.7891 -4.2689 0.0076 16 6 0.6095 -4.9852 -0.0809 17 6 -0.3844 -4.5786 -0.9484 18 6 -0.1972 -3.4450 -1.7357 19 6 -1.2629 -3.0027 -2.6700 20 7 -1.2252 -1.9351 -3.4798 21 7 -2.3410 -1.9051 -4.1261 22 7 -3.0696 -2.8968 -3.7482 23 1 -3.9585 -3.0985 -4.0799 24 7 -2.4323 -3.5801 -2.8606 25 6 0.9933 -2.7273 -1.6430 26 1 -1.0497 -0.0004 0.0003 27 1 3.0090 0.7287 0.7255 28 1 3.0093 0.2652 -0.9931 29 1 1.6790 0.5705 3.2172 30 1 4.0797 -3.0431 -0.4026 31 1 3.4870 -1.8976 -1.6293 32 1 2.5640 -4.5902 0.6879 33 1 0.4652 -5.8638 0.5303 34 1 -1.3071 -5.1360 -1.0135 35 1 1.1435 -1.8476 -2.2513 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588350102.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:43 Heat of formation + Delta-G solvation = 236.483185 kcal Electronic energy + Delta-G solvation = -21450.918441 eV Core-core repulsion = 18261.848578 eV Total energy + Delta-G solvation = -3189.069864 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.27683 -38.83707 -36.00776 -34.22939 -33.41951 -31.93508 -31.46854 -30.24454 -29.83484 -26.22357 -25.64616 -24.43889 -24.15587 -22.02585 -21.48677 -20.05387 -18.99382 -17.40141 -16.97498 -16.38290 -16.22904 -15.27983 -14.82355 -14.62768 -13.94113 -13.75741 -13.39246 -13.17949 -13.06890 -12.43619 -12.26819 -12.16748 -11.48075 -11.40541 -11.19463 -11.08374 -11.00918 -10.80083 -10.69500 -10.60572 -10.44526 -10.28583 -9.93949 -8.90873 -8.77306 -8.39641 -8.18000 -8.04364 -7.04031 -5.79780 -3.18751 1.03342 1.45801 1.95646 2.34978 2.72218 3.37195 3.44622 3.44875 3.93881 4.21679 4.42347 4.42947 4.49298 4.59119 5.31810 5.39845 5.43515 5.50553 5.63302 5.71358 5.76640 5.92024 5.94647 6.09073 6.16417 6.44791 6.47606 6.52595 6.62200 6.75171 6.89580 6.96822 7.25970 7.29149 7.47424 7.51782 7.73341 8.25943 8.31578 9.08897 9.31729 9.74818 10.20662 11.22760 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.023267 B = 0.005114 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.113381 B = 5473.365901 C = 5952.754493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.094 4.094 3 C 0.267 3.733 4 N -0.574 5.574 5 C -0.264 4.264 6 H 0.076 0.924 7 C 0.006 3.994 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.283 1.283 11 H -0.292 1.292 12 H -0.284 1.284 13 C 0.176 3.824 14 C -0.085 4.085 15 C -0.078 4.078 16 C -0.130 4.130 17 C -0.097 4.097 18 C -0.033 4.033 19 C 0.237 3.763 20 N -0.263 5.263 21 N -0.058 5.058 22 N -0.237 5.237 23 H 0.471 0.529 24 N -0.305 5.305 25 C -0.054 4.054 26 H 0.181 0.819 27 H 0.096 0.904 28 H 0.038 0.962 29 H 0.255 0.745 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.661 -7.229 -10.206 13.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 C -0.097 4.097 3 C 0.142 3.858 4 N -0.292 5.292 5 C -0.393 4.393 6 H 0.094 0.906 7 C -0.194 4.194 8 N -0.524 5.524 9 Si 0.729 3.271 10 H -0.209 1.209 11 H -0.218 1.218 12 H -0.210 1.210 13 C 0.050 3.950 14 C -0.089 4.089 15 C -0.097 4.097 16 C -0.148 4.148 17 C -0.118 4.118 18 C -0.037 4.037 19 C -0.042 4.042 20 N -0.136 5.136 21 N -0.053 5.053 22 N -0.081 5.081 23 H 0.324 0.676 24 N -0.157 5.157 25 C -0.075 4.075 26 H 0.198 0.802 27 H 0.114 0.886 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.934 -6.660 -10.520 13.793 hybrid contribution -0.849 -0.390 1.384 1.670 sum -6.783 -7.050 -9.136 13.385 Atomic orbital electron populations 1.23942 0.95052 1.04163 1.07896 1.24067 0.95039 0.96684 0.93909 1.17871 0.83003 0.88057 0.96900 1.44428 1.73818 1.05881 1.05103 1.19182 1.26346 1.11362 0.82380 0.90575 1.24928 0.96314 1.00512 0.97689 1.70152 1.21099 1.28335 1.32811 0.86411 0.79713 0.77420 0.83506 1.20940 1.21790 1.21026 1.20078 0.91535 0.90548 0.92864 1.21048 0.99753 0.94143 0.93957 1.21155 0.97123 0.94313 0.97157 1.20938 0.94047 1.00608 0.99203 1.20880 0.99095 0.95702 0.96138 1.17156 0.91203 0.98070 0.97265 1.23863 0.92097 0.90502 0.97724 1.76136 1.11945 1.17929 1.07631 1.78881 0.98845 1.08690 1.18894 1.47679 1.17998 1.16655 1.25814 0.67555 1.74913 1.07768 1.22566 1.10416 1.20930 0.91314 0.97696 0.97577 0.80154 0.88612 0.94389 0.93441 0.92009 0.92850 0.86061 0.86289 0.86191 0.85703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.92 19.02 29.55 0.56 -6.36 16 2 C -0.09 -2.29 10.29 -37.12 -0.38 -2.67 16 3 C 0.27 6.20 5.45 -6.83 -0.04 6.16 16 4 N -0.57 -13.35 2.49 -177.95 -0.44 -13.79 16 5 C -0.26 -6.72 9.66 -15.06 -0.15 -6.87 16 6 H 0.08 1.88 7.91 -52.49 -0.41 1.47 16 7 C 0.01 0.15 4.84 -17.43 -0.08 0.06 16 8 N -0.88 -24.65 9.49 55.49 0.53 -24.12 16 9 Si 0.90 20.98 29.61 -169.99 -5.03 15.95 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 13 C 0.18 3.39 5.82 -5.19 -0.03 3.36 16 14 C -0.09 -1.62 5.22 -104.67 -0.55 -2.16 16 15 C -0.08 -1.38 9.69 -39.53 -0.38 -1.77 16 16 C -0.13 -2.08 10.03 -39.63 -0.40 -2.48 16 17 C -0.10 -1.58 9.70 -39.26 -0.38 -1.96 16 18 C -0.03 -0.59 5.88 -104.89 -0.62 -1.21 16 19 C 0.24 3.98 7.94 -156.31 -1.24 2.74 16 20 N -0.26 -4.49 12.23 32.15 0.39 -4.10 16 21 N -0.06 -0.81 13.47 60.35 0.81 0.00 16 22 N -0.24 -2.62 7.90 60.35 0.48 -2.15 16 23 H 0.47 2.66 8.96 -340.36 -3.05 -0.39 16 24 N -0.31 -4.32 12.08 32.17 0.39 -3.93 16 25 C -0.05 -1.01 8.06 -39.27 -0.32 -1.33 16 26 H 0.18 3.90 7.80 -54.10 -0.42 3.48 16 27 H 0.10 2.43 6.43 -51.93 -0.33 2.09 16 28 H 0.04 0.77 7.97 -51.92 -0.41 0.36 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.06 1.11 7.97 -51.93 -0.41 0.69 16 31 H 0.05 0.92 7.89 -51.93 -0.41 0.51 16 32 H 0.12 2.07 8.06 -52.49 -0.42 1.64 16 33 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 34 H 0.12 1.71 7.88 -52.49 -0.41 1.30 16 35 H 0.13 2.39 7.89 -52.48 -0.41 1.98 16 LS Contribution 315.32 15.07 4.75 4.75 Total: -1.00 -31.32 315.32 -8.39 -39.71 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.27 Total: 2.16 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -4.00 Total: -14.47 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: 2.16 Total: -48.09 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.32 -8.39 -39.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588350102.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 276.190 kcal (2) G-P(sol) polarization free energy of solvation -31.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 244.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 236.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds