Wall clock time and date at job start Tue Mar 31 2020 06:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33564 * 118.47009 * 2 1 4 4 C 1.41686 * 118.79137 * 0.40302 * 3 2 1 5 5 O 1.21772 * 120.00222 * 265.62705 * 4 3 2 6 6 N 1.34780 * 119.99447 * 85.35412 * 4 3 2 7 7 C 1.36935 * 120.00064 * 353.98409 * 6 4 3 8 8 H 1.08001 * 119.99636 * 318.44551 * 7 6 4 9 9 C 1.38977 * 119.99936 * 138.45006 * 7 6 4 10 10 N 1.31416 * 120.00143 * 342.54448 * 9 7 6 11 11 Si 1.86800 * 120.00108 * 162.55082 * 9 7 6 12 12 H 1.48498 * 109.47270 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47182 * 119.99469 * 11 9 7 14 14 H 1.48494 * 109.47027 * 239.99781 * 11 9 7 15 15 C 1.46496 * 119.99683 * 173.98488 * 6 4 3 16 16 C 1.52998 * 109.47186 * 86.88387 * 15 6 4 17 17 C 1.50702 * 109.46960 * 179.97438 * 16 15 6 18 18 O 1.20828 * 120.00189 * 359.97438 * 17 16 15 19 19 O 1.34224 * 120.00151 * 179.97438 * 17 16 15 20 20 C 1.50420 * 122.41582 * 180.13289 * 3 2 1 21 21 C 1.53212 * 109.56031 * 342.58239 * 20 3 2 22 22 C 1.53476 * 108.26804 * 47.37435 * 21 20 3 23 23 O 1.34374 * 118.46797 * 180.24064 * 2 1 3 24 24 H 1.09000 * 109.46930 * 84.74668 * 1 2 3 25 25 H 1.08997 * 109.47220 * 204.74677 * 1 2 3 26 26 H 1.08997 * 109.47150 * 324.74188 * 1 2 3 27 27 H 0.97000 * 120.00289 * 180.02562 * 10 9 7 28 28 H 1.09007 * 109.46615 * 206.88447 * 15 6 4 29 29 H 1.08998 * 109.46953 * 326.87499 * 15 6 4 30 30 H 1.08999 * 109.47044 * 299.99535 * 16 15 6 31 31 H 1.08997 * 109.47438 * 59.99947 * 16 15 6 32 32 H 0.96696 * 117.00400 * 179.97438 * 19 17 16 33 33 H 1.09002 * 109.45703 * 102.60853 * 20 3 2 34 34 H 1.08998 * 109.45747 * 222.55280 * 20 3 2 35 35 H 1.08994 * 109.70390 * 167.07604 * 21 20 3 36 36 H 1.09002 * 109.69952 * 287.63967 * 21 20 3 37 37 H 1.08996 * 109.70210 * 56.95939 * 22 21 20 38 38 H 1.08995 * 109.70184 * 177.53059 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1437 1.1741 0.0000 4 6 1.3775 2.3659 0.0087 5 8 1.1093 2.9251 -1.0392 6 7 0.9408 2.8776 1.1766 7 6 1.1305 2.1837 2.3418 8 1 0.9771 1.1148 2.3648 9 6 1.5203 2.8547 3.4947 10 7 2.0344 4.0613 3.4106 11 14 1.3136 2.0418 5.1637 12 1 0.7154 0.6941 4.9872 13 1 2.6399 1.9131 5.8193 14 1 0.4208 2.8719 6.0115 15 6 0.2631 4.1762 1.1995 16 6 -1.2320 3.9758 0.9441 17 6 -1.9292 5.3117 0.9682 18 8 -1.2953 6.3204 1.1696 19 8 -3.2543 5.3809 0.7661 20 6 3.6443 1.2776 -0.0029 21 6 4.2517 -0.0618 0.4265 22 6 3.5566 -1.1801 -0.3619 23 8 2.1475 -1.1813 -0.0050 24 1 -0.3633 0.0941 -1.0234 25 1 -0.3633 -0.9333 0.4302 26 1 -0.3633 0.8391 0.5932 27 1 2.3068 4.5295 4.2153 28 1 0.4059 4.6434 2.1740 29 1 0.6815 4.8180 0.4242 30 1 -1.3748 3.5087 -0.0303 31 1 -1.6503 3.3341 1.7195 32 1 -3.6569 6.2597 0.7912 33 1 3.9891 1.5275 -1.0064 34 1 3.9559 2.0571 0.6923 35 1 5.3197 -0.0677 0.2087 36 1 4.0937 -0.2113 1.4946 37 1 3.6647 -0.9979 -1.4311 38 1 4.0018 -2.1415 -0.1061 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594090733.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:30 Heat of formation + Delta-G solvation = -152.006351 kcal Electronic energy + Delta-G solvation = -23537.504944 eV Core-core repulsion = 19959.694488 eV Total energy + Delta-G solvation = -3577.810456 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.06066 -39.71142 -38.22320 -35.79881 -34.88268 -33.46427 -32.61405 -31.93181 -30.27919 -27.63971 -25.32191 -25.16027 -23.62254 -22.28294 -20.77331 -19.66495 -18.45117 -17.73924 -17.14928 -16.22082 -15.87556 -15.52883 -15.49030 -15.31596 -14.52926 -14.36659 -13.88878 -13.57960 -13.27687 -12.82689 -12.67855 -12.62203 -12.48362 -12.34406 -11.99018 -11.67128 -11.51446 -11.28683 -11.15870 -11.11312 -10.76638 -10.68616 -10.44966 -10.37904 -10.13794 -10.05821 -9.98588 -9.13444 -8.55702 -7.61716 -7.36470 -6.38636 -4.14321 2.64218 2.68063 3.08822 3.20789 3.24037 3.43152 3.68975 3.81444 4.12085 4.94555 4.95721 5.12129 5.19555 5.34221 5.57657 5.60488 5.68319 5.81514 5.82336 5.93977 6.01109 6.02496 6.07780 6.30587 6.34343 6.43292 6.52046 6.53595 6.81868 6.85051 6.86164 7.13539 7.31047 7.46736 7.88465 8.00918 8.30937 8.36666 9.06134 9.45260 9.89796 10.63905 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014410 B = 0.007198 C = 0.005673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.567070 B = 3888.918520 C = 4934.289317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.092 3.908 3 C -0.222 4.222 4 C 0.530 3.470 5 O -0.605 6.605 6 N -0.433 5.433 7 C -0.337 4.337 8 H 0.092 0.908 9 C 0.047 3.953 10 N -0.856 5.856 11 Si 0.909 3.091 12 H -0.266 1.266 13 H -0.281 1.281 14 H -0.280 1.280 15 C 0.130 3.870 16 C -0.126 4.126 17 C 0.483 3.517 18 O -0.515 6.515 19 O -0.525 6.525 20 C -0.056 4.056 21 C -0.154 4.154 22 C 0.062 3.938 23 O -0.321 6.321 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.270 0.730 28 H 0.110 0.890 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.401 0.599 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.079 -6.262 -2.578 7.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.046 3.954 3 C -0.226 4.226 4 C 0.320 3.680 5 O -0.491 6.491 6 N -0.151 5.151 7 C -0.465 4.465 8 H 0.109 0.891 9 C -0.160 4.160 10 N -0.492 5.492 11 Si 0.735 3.265 12 H -0.190 1.190 13 H -0.207 1.207 14 H -0.205 1.205 15 C 0.006 3.994 16 C -0.165 4.165 17 C 0.325 3.675 18 O -0.402 6.402 19 O -0.336 6.336 20 C -0.094 4.094 21 C -0.191 4.191 22 C -0.013 4.013 23 O -0.235 6.235 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.110 0.890 27 H 0.080 0.920 28 H 0.128 0.872 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.258 0.742 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.846 -6.125 -2.844 7.001 hybrid contribution -0.048 0.488 1.025 1.137 sum -1.894 -5.637 -1.819 6.219 Atomic orbital electron populations 1.20853 0.88853 1.03865 1.02877 1.20638 0.93233 0.83686 0.97866 1.19625 0.96303 0.93474 1.13192 1.16910 0.80837 0.85968 0.84259 1.90675 1.61915 1.64129 1.32414 1.43457 1.48053 1.17769 1.05836 1.19412 1.47632 0.93414 0.86004 0.89062 1.25459 0.94345 0.96050 1.00159 1.69929 1.36327 1.13199 1.29729 0.86152 0.78240 0.79717 0.82363 1.19007 1.20699 1.20546 1.21118 0.86114 0.87234 1.04940 1.21894 0.98351 0.91133 1.05133 1.23817 0.79494 0.92787 0.71396 1.90703 1.66343 1.38174 1.45016 1.84590 1.25009 1.39464 1.84573 1.20043 0.90658 0.97328 1.01344 1.22152 0.99795 0.95617 1.01554 1.23303 0.79367 0.99839 0.98777 1.86070 1.24125 1.29096 1.84213 0.90962 0.91274 0.88958 0.92004 0.87193 0.91929 0.88267 0.87790 0.74177 0.91776 0.89796 0.90553 0.90251 0.91950 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.89 9.25 36.01 0.33 -1.56 16 2 C 0.09 1.78 5.99 -35.94 -0.22 1.57 16 3 C -0.22 -4.72 4.16 -105.08 -0.44 -5.15 16 4 C 0.53 12.77 4.98 -14.94 -0.07 12.69 16 5 O -0.60 -15.97 16.79 5.12 0.09 -15.89 16 6 N -0.43 -10.46 2.16 -118.02 -0.25 -10.72 16 7 C -0.34 -8.15 7.83 -15.00 -0.12 -8.27 16 8 H 0.09 2.18 6.47 -52.49 -0.34 1.84 16 9 C 0.05 1.15 4.99 -17.46 -0.09 1.06 16 10 N -0.86 -22.36 11.56 55.50 0.64 -21.72 16 11 Si 0.91 19.12 29.59 -169.99 -5.03 14.09 16 12 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 13 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 14 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 15 C 0.13 3.08 4.17 -4.04 -0.02 3.06 16 16 C -0.13 -2.45 6.12 -27.88 -0.17 -2.62 16 17 C 0.48 8.84 8.33 36.01 0.30 9.14 16 18 O -0.51 -11.00 16.74 -18.75 -0.31 -11.32 16 19 O -0.52 -7.47 13.42 -39.24 -0.53 -7.99 16 20 C -0.06 -1.05 5.89 -27.91 -0.16 -1.22 16 21 C -0.15 -2.27 6.23 -26.37 -0.16 -2.44 16 22 C 0.06 0.85 7.15 37.40 0.27 1.12 16 23 O -0.32 -5.57 10.40 -14.95 -0.16 -5.72 16 24 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.09 1.76 5.74 -51.93 -0.30 1.46 16 27 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 28 H 0.11 2.83 5.67 -51.93 -0.29 2.53 16 29 H 0.06 1.60 7.57 -51.93 -0.39 1.21 16 30 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 31 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 32 H 0.40 3.77 9.10 45.56 0.41 4.19 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 321.35 15.07 4.84 4.84 Total: -1.00 -31.37 321.35 -5.53 -36.90 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -4.27 Total: 10.14 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -0.55 Total: 7.39 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.39 Total: -32.44 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -0.91 Total: -40.92 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.37 -5.53 -36.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594090733.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.110 kcal (2) G-P(sol) polarization free energy of solvation -31.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds