Wall clock time and date at job start Tue Mar 31 2020 05:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00274 * 2 1 4 4 H 1.48500 * 109.46933 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47114 * 299.99700 * 3 2 1 6 6 H 1.48495 * 109.47214 * 59.99517 * 3 2 1 7 7 C 1.37874 * 119.99528 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00123 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00416 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47350 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47195 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00114 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00451 * 180.02562 * 11 10 9 14 14 C 1.48093 * 127.84109 * 0.02562 * 13 11 10 15 15 C 1.54280 * 104.76251 * 219.87078 * 14 13 11 16 16 H 1.09002 * 112.68532 * 99.03022 * 15 14 13 17 17 C 1.54388 * 109.35438 * 225.21181 * 15 14 13 18 18 O 1.44386 * 104.91964 * 87.24980 * 17 15 14 19 19 C 1.44377 * 105.25488 * 40.76532 * 18 17 15 20 20 C 1.54394 * 104.92248 * 319.23542 * 19 18 17 21 21 C 1.50703 * 112.70999 * 146.58035 * 20 19 18 22 22 O 1.20827 * 119.99754 * 242.71974 * 21 20 19 23 23 O 1.34227 * 120.00000 * 62.71624 * 21 20 19 24 24 C 1.48090 * 127.85116 * 179.97438 * 13 11 10 25 25 H 0.97000 * 119.99760 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47059 * 60.00586 * 9 7 2 27 27 H 1.09000 * 109.47713 * 300.00527 * 9 7 2 28 28 H 1.08996 * 109.47249 * 60.00567 * 10 9 7 29 29 H 1.09001 * 109.47387 * 300.00121 * 10 9 7 30 30 H 1.09002 * 110.37635 * 101.05699 * 14 13 11 31 31 H 1.08997 * 110.38236 * 338.69107 * 14 13 11 32 32 H 1.09000 * 110.34881 * 206.10892 * 17 15 14 33 33 H 1.08996 * 110.35633 * 328.38780 * 17 15 14 34 34 H 1.09005 * 110.35171 * 200.37248 * 19 18 17 35 35 H 1.09009 * 110.44143 * 78.14208 * 19 18 17 36 36 H 0.96707 * 116.99856 * 180.02562 * 23 21 20 37 37 H 1.08999 * 110.37838 * 21.31107 * 24 13 11 38 38 H 1.08999 * 110.47197 * 258.99902 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0017 10 6 2.2451 -3.6621 0.0027 11 6 1.4915 -4.9672 0.0033 12 8 0.2787 -4.9672 0.0033 13 7 2.1653 -6.1345 0.0047 14 6 3.6323 -6.3367 0.0065 15 6 3.8665 -7.5252 -0.9489 16 1 4.1735 -7.2090 -1.9459 17 6 4.8630 -8.5120 -0.3033 18 8 4.0469 -9.3941 0.4971 19 6 2.8756 -9.6593 -0.3043 20 6 2.5198 -8.3026 -0.9496 21 6 1.9301 -8.4511 -2.3285 22 8 2.5046 -7.9862 -3.2845 23 8 0.7668 -9.0997 -2.4947 24 6 1.6068 -7.5060 0.0060 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5575 -0.8881 27 1 0.6245 -2.5563 0.8919 28 1 2.8717 -3.6037 0.8927 29 1 2.8718 -3.6052 -0.8873 30 1 3.9804 -6.5820 1.0099 31 1 4.1388 -5.4458 -0.3648 32 1 5.3895 -9.0767 -1.0728 33 1 5.5727 -7.9762 0.3270 34 1 2.0561 -10.0062 0.3253 35 1 3.1002 -10.3979 -1.0739 36 1 0.4283 -9.1697 -3.3978 37 1 0.5822 -7.4990 -0.3657 38 1 1.6432 -7.9315 1.0088 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594606428.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:15 Heat of formation + Delta-G solvation = -166.305303 kcal Electronic energy + Delta-G solvation = -22845.312847 eV Core-core repulsion = 19266.882341 eV Total energy + Delta-G solvation = -3578.430505 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.67957 -39.72710 -38.75046 -36.47152 -36.07417 -33.50128 -32.18512 -31.23977 -30.83403 -26.87199 -26.20790 -24.80821 -24.33355 -22.29271 -21.38452 -20.00259 -18.87648 -18.24765 -17.76379 -16.90836 -16.30032 -15.96643 -15.88660 -15.74779 -15.42975 -15.01706 -14.53832 -14.41201 -13.66106 -13.64565 -13.48191 -12.50779 -12.46936 -12.30915 -12.16326 -12.10946 -11.86836 -11.70524 -11.36884 -11.34359 -11.11587 -10.95404 -10.79148 -10.58324 -10.27075 -9.98721 -9.68078 -9.22991 -9.04956 -8.65279 -8.33092 -5.96963 -4.01448 1.82407 2.54582 3.04672 3.11893 3.32411 3.39545 3.42836 3.57965 3.59662 4.09103 4.35054 4.46752 4.57143 4.61643 4.86139 4.99204 5.08184 5.13316 5.24905 5.29112 5.31480 5.38248 5.49007 5.54053 5.65412 5.74632 6.12730 6.16376 6.18992 6.25391 6.32432 6.85077 7.54912 7.73213 7.75127 7.83637 8.05391 8.36182 8.63828 9.06695 9.62249 11.14122 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.026556 B = 0.003823 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.109530 B = 7322.473675 C = 7691.286981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.124 4.124 11 C 0.534 3.466 12 O -0.528 6.528 13 N -0.635 5.635 14 C 0.110 3.890 15 C -0.124 4.124 16 H 0.121 0.879 17 C 0.051 3.949 18 O -0.361 6.361 19 C 0.070 3.930 20 C -0.106 4.106 21 C 0.504 3.496 22 O -0.503 6.503 23 O -0.510 6.510 24 C 0.122 3.878 25 H 0.260 0.740 26 H 0.023 0.977 27 H 0.024 0.976 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.068 0.932 36 H 0.415 0.585 37 H 0.092 0.908 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.916 -22.217 -1.854 24.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.163 4.163 11 C 0.325 3.675 12 O -0.403 6.403 13 N -0.372 5.372 14 C -0.014 4.014 15 C -0.144 4.144 16 H 0.139 0.861 17 C -0.026 4.026 18 O -0.279 6.279 19 C -0.008 4.008 20 C -0.108 4.108 21 C 0.345 3.655 22 O -0.390 6.390 23 O -0.322 6.322 24 C -0.001 4.001 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.043 0.957 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.086 0.914 36 H 0.274 0.726 37 H 0.110 0.890 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.367 -21.864 -1.489 23.458 hybrid contribution 0.171 0.902 -0.967 1.333 sum 8.538 -20.962 -2.455 22.767 Atomic orbital electron populations 1.70008 1.06079 1.26503 1.50227 1.25023 0.94822 0.99254 0.95261 0.86525 0.80005 0.83785 0.77594 1.19724 1.21011 1.20994 1.21232 0.92960 0.90901 1.51362 0.92515 1.18930 0.93182 0.89362 0.98673 1.21872 1.00749 0.91184 1.02525 1.21418 0.88107 0.84061 0.73889 1.90689 1.14202 1.86673 1.48713 1.49279 1.06974 1.04955 1.75986 1.22434 0.82105 0.97825 0.99009 1.23662 0.92222 0.96078 1.02404 0.86080 1.23512 0.93368 0.90591 0.95080 1.89187 1.31650 1.67069 1.40014 1.23297 0.89677 0.92613 0.95198 1.22692 0.97768 0.99488 0.90890 1.22466 0.78357 0.73827 0.90803 1.90732 1.60929 1.45058 1.42233 1.84493 1.37948 1.70759 1.38963 1.22181 0.97666 0.82300 0.97992 0.92984 0.95822 0.95738 0.90053 0.90179 0.90066 0.88943 0.91393 0.87585 0.87119 0.91412 0.72605 0.89000 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.56 13.29 55.43 0.74 -26.82 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.53 -15.00 9.11 -34.44 -0.31 -15.31 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 9 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 10 C -0.12 -2.56 4.61 -27.88 -0.13 -2.69 16 11 C 0.53 10.71 7.91 -10.98 -0.09 10.62 16 12 O -0.53 -12.81 16.24 5.55 0.09 -12.72 16 13 N -0.63 -9.59 3.31 -169.51 -0.56 -10.15 16 14 C 0.11 1.21 6.38 -2.50 -0.02 1.19 16 15 C -0.12 -1.20 3.72 -87.90 -0.33 -1.52 16 16 H 0.12 1.27 6.96 -51.93 -0.36 0.91 16 17 C 0.05 0.38 6.89 37.88 0.26 0.64 16 18 O -0.36 -3.26 11.65 -35.23 -0.41 -3.67 16 19 C 0.07 0.55 6.48 37.89 0.25 0.80 16 20 C -0.11 -1.08 1.02 -152.91 -0.16 -1.24 16 21 C 0.50 5.73 7.07 36.01 0.25 5.99 16 22 O -0.50 -7.12 16.39 -18.75 -0.31 -7.43 16 23 O -0.51 -4.47 13.34 -39.25 -0.52 -5.00 16 24 C 0.12 1.52 6.15 -2.48 -0.02 1.51 16 25 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 28 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 29 H 0.08 1.54 7.95 -51.93 -0.41 1.12 16 30 H 0.08 0.77 7.61 -51.93 -0.40 0.37 16 31 H 0.09 0.97 7.30 -51.93 -0.38 0.59 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.11 0.62 7.78 -51.93 -0.40 0.21 16 34 H 0.11 0.72 7.78 -51.93 -0.40 0.32 16 35 H 0.07 0.46 7.98 -51.92 -0.41 0.05 16 36 H 0.41 1.98 9.10 45.56 0.41 2.39 16 37 H 0.09 1.29 7.57 -51.93 -0.39 0.89 16 38 H 0.09 0.97 7.61 -51.93 -0.40 0.57 16 LS Contribution 320.33 15.07 4.83 4.83 Total: -1.00 -37.19 320.33 -6.04 -43.23 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -4.37 Total: -1.42 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -0.50 Total: 2.44 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.18 Total: -36.97 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -1.15 Total: -28.82 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -37.19 -6.04 -43.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606428.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.070 kcal (2) G-P(sol) polarization free energy of solvation -37.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds